Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10069H08.5 |
| Conread position: | 1-184 |
| Cow position: | chr28:12999214-12999029 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 40, 18 |
| Conread position: | 1-187 |
| Cow position: | chr28:31165863-31166056 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-197 |
| Cow position: | chr28:12046793-12046997 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-229 |
| Cow position: | chr28:1202125-1202348 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-235 |
| Cow position: | chr28:13255755-13255994 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 184 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-273 |
| Cow position: | chr28:33284990-33285267 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 18 |
| Conread position: | 1-274 |
| Cow position: | chr28:4763999-4763722 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 212 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-276 |
| Cow position: | chr28:25825746-25826028 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 64, 17 |
| Conread position: | 1-279 |
| Cow position: | chr28:19133894-19133627 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-287 |
| Cow position: | chr28:29455551-29455825 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 219 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 64, 16 |
| Conread position: | 1-288 |
| Cow position: | chr28:3769551-3769829 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 88, 17 |
| Conread position: | 1-289 |
| Cow position: | chr28:11500764-11501062 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 18 |
| Conread position: | 1-289 |
| Cow position: | chr28:13865960-13865674 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 31, 15 |
| Conread position: | 1-289 |
| Cow position: | chr28:21873879-21873602 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-289 |
| Cow position: | chr28:23230964-23231238 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 61, 18 |
| Conread position: | 1-289 |
| Cow position: | chr28:23668661-23668954 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 41, 15 |
| Conread position: | 1-291 |
| Cow position: | chr28:34150432-34150700 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 41, 21 |
| Conread position: | 2-269 |
| Cow position: | chr28:4274725-4274996 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 3-171 |
| Cow position: | chr28:11181044-11181217 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 3-225 |
| Cow position: | chr28:9237431-9237207 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 36, 16 |
| Conread position: | 3-287 |
| Cow position: | chr28:15678004-15677725 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 3-288 |
| Cow position: | chr28:18934572-18934286 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 44, 15 |
| Conread position: | 3-290 |
| Cow position: | chr28:31871639-31871920 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 45, 9 |
| Conread position: | 11-288 |
| Cow position: | chr28:23621649-23621378 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 32, 83 |
| Conread position: | 15-222 |
| Cow position: | chr28:7540050-7540264 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 27, 185 |
| Conread position: | 15-289 |
| Cow position: | chr28:9821862-9822144 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 108 |
| Conread position: | 17-279 |
| Cow position: | chr28:25564190-25563920 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 242 |
| Conread position: | 17-289 |
| Cow position: | chr28:17362496-17362757 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 22, 132 |
| Conread position: | 18-198 |
| Cow position: | chr28:4406349-4406170 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 24, 42 |
| Conread position: | 18-279 |
| Cow position: | chr28:13693854-13693590 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 66 |
| Conread position: | 19-285 |
| Cow position: | chr28:2814405-2814666 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 201 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 26, 179 |
| Conread position: | 23-276 |
| Cow position: | chr28:21570290-21570030 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 18, 177 |
| Conread position: | 25-289 |
| Cow position: | chr28:10035484-10035229 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 200 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 17, 86 |
| Conread position: | 39-229 |
| Cow position: | chr28:33485719-33485517 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 39-279 |
| Cow position: | chr28:4098913-4098682 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 21, 108 |
| Conread position: | 39-288 |
| Cow position: | chr28:16687109-16686863 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 26, 140 |
| Conread position: | 55-274 |
| Cow position: | chr28:18462546-18462766 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 11, 148 |
| Conread position: | 64-284 |
| Cow position: | chr28:12942434-12942210 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 173 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 78, 133 |
| Conread position: | 64-289 |
| Cow position: | chr28:10641977-10642188 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 183 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 110, 13 |
| Conread position: | 68-290 |
| Cow position: | chr28:14218423-14218649 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 21, 55 |
| Conread position: | 85-272 |
| Cow position: | chr28:15577231-15577414 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 54, 9 |
| Conread position: | 85-288 |
| Cow position: | chr28:15498174-15498386 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 53, 171 |
| Conread position: | 104-280 |
| Cow position: | chr28:31971741-31971917 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 76, 32 |
| Conread position: | 123-279 |
| Cow position: | chr28:29073759-29073913 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 137, 23 |
Show alignments to all cow chromosomes.