Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10069H08.5 |
| Conread position: | 1-123 |
| Cow position: | chr29:18068017-18067894 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 41, 14 |
| Conread position: | 1-145 |
| Cow position: | chr29:11766829-11766687 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 39, 18 |
| Conread position: | 1-186 |
| Cow position: | chr29:5616755-5616944 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-222 |
| Cow position: | chr29:1340895-1340671 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 64, 17 |
| Conread position: | 1-230 |
| Cow position: | chr29:4444831-4444597 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 40, 19 |
| Conread position: | 1-247 |
| Cow position: | chr29:18541159-18540926 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-249 |
| Cow position: | chr29:39023225-39023483 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 41, 15 |
| Conread position: | 1-267 |
| Cow position: | chr29:41083261-41083004 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 41, 19 |
| Conread position: | 1-271 |
| Cow position: | chr29:19509059-19508796 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 203 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 42, 17 |
| Conread position: | 1-280 |
| Cow position: | chr29:18963847-18963575 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 215 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-284 |
| Cow position: | chr29:22895840-22895554 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-288 |
| Cow position: | chr29:356434-356150 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 40, 18 |
| Conread position: | 1-288 |
| Cow position: | chr29:4367839-4367544 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 220 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 42, 17 |
| Conread position: | 1-288 |
| Cow position: | chr29:11366347-11366069 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 52, 17 |
| Conread position: | 1-288 |
| Cow position: | chr29:37960863-37961154 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 1-289 |
| Cow position: | chr29:13554250-13553955 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 17 |
| Conread position: | 1-308 |
| Cow position: | chr29:16055019-16055337 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 2-279 |
| Cow position: | chr29:26129606-26129334 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 2-279 |
| Cow position: | chr29:29302546-29302819 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 19 |
| Conread position: | 2-289 |
| Cow position: | chr29:18073051-18072752 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 16 |
| Conread position: | 3-186 |
| Cow position: | chr29:21675505-21675320 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 81, 12 |
| Conread position: | 3-279 |
| Cow position: | chr29:12451485-12451207 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 3-289 |
| Cow position: | chr29:18695362-18695080 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 62, 16 |
| Conread position: | 3-289 |
| Cow position: | chr29:19907466-19907178 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 37, 16 |
| Conread position: | 3-292 |
| Cow position: | chr29:26299081-26298807 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 57, 12 |
| Conread position: | 3-294 |
| Cow position: | chr29:11071574-11071885 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 4-235 |
| Cow position: | chr29:14758751-14758987 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 202 |
| Conread position: | 4-271 |
| Cow position: | chr29:29559609-29559879 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 56, 11 |
| Conread position: | 5-276 |
| Cow position: | chr29:7407795-7408049 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 15-249 |
| Cow position: | chr29:6772231-6771994 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 50, 30 |
| Conread position: | 15-273 |
| Cow position: | chr29:26317953-26317693 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 39, 165 |
| Conread position: | 15-279 |
| Cow position: | chr29:13634197-13634464 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 27, 142 |
| Conread position: | 15-288 |
| Cow position: | chr29:9937982-9938246 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 50, 23 |
| Conread position: | 15-289 |
| Cow position: | chr29:32655334-32655598 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 25, 51 |
| Conread position: | 16-161 |
| Cow position: | chr29:34785113-34785261 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 16-249 |
| Cow position: | chr29:7663170-7663408 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 26, 37 |
| Conread position: | 16-288 |
| Cow position: | chr29:32645011-32644747 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 26, 131 |
| Conread position: | 17-290 |
| Cow position: | chr29:11787894-11787619 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 181 |
| Conread position: | 29-212 |
| Cow position: | chr29:32645547-32645371 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 13, 72 |
| Conread position: | 39-224 |
| Cow position: | chr29:23233523-23233336 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 26, 44 |
| Conread position: | 41-285 |
| Cow position: | chr29:2588817-2589065 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 24, 63 |
| Conread position: | 41-289 |
| Cow position: | chr29:17339232-17339474 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 32, 108 |
| Conread position: | 43-289 |
| Cow position: | chr29:34736407-34736643 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 22, 40 |
| Conread position: | 64-275 |
| Cow position: | chr29:23983906-23984122 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 23, 82 |
| Conread position: | 67-279 |
| Cow position: | chr29:21534626-21534843 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 22, 142 |
| Conread position: | 70-279 |
| Cow position: | chr29:12901065-12901276 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 109, 71 |
| Conread position: | 85-288 |
| Cow position: | chr29:1395621-1395423 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 55, 15 |
| Conread position: | 102-275 |
| Cow position: | chr29:603311-603478 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 40, 5 |
| Conread position: | 137-284 |
| Cow position: | chr29:5964445-5964593 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 16, 59 |
| Conread position: | 150-287 |
| Cow position: | chr29:36404784-36404646 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 29, 54 |
Show alignments to all cow chromosomes.