Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10069H08.5 |
| Conread position: | 1-123 |
| Cow position: | chr4:65604366-65604488 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 41, 11 |
| Conread position: | 1-158 |
| Cow position: | chr4:1800013-1799855 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-189 |
| Cow position: | chr4:5002869-5002678 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-199 |
| Cow position: | chr4:19728997-19729194 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 41, 21 |
| Conread position: | 1-212 |
| Cow position: | chr4:28065638-28065852 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 86, 17 |
| Conread position: | 1-215 |
| Cow position: | chr4:48283180-48283391 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 64, 18 |
| Conread position: | 1-221 |
| Cow position: | chr4:40433795-40434020 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 42, 17 |
| Conread position: | 1-230 |
| Cow position: | chr4:30531-30762 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-238 |
| Cow position: | chr4:5913239-5913482 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 40, 17 |
| Conread position: | 1-238 |
| Cow position: | chr4:20066114-20066354 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 61, 17 |
| Conread position: | 1-244 |
| Cow position: | chr4:30131442-30131206 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-247 |
| Cow position: | chr4:23311163-23311400 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 64, 17 |
| Conread position: | 1-249 |
| Cow position: | chr4:37881042-37880788 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 193 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-266 |
| Cow position: | chr4:52088033-52087773 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 40, 17 |
| Conread position: | 1-271 |
| Cow position: | chr4:9846020-9845752 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 18 |
| Conread position: | 1-273 |
| Cow position: | chr4:23167009-23166737 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 14 |
| Conread position: | 1-274 |
| Cow position: | chr4:10837275-10837548 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 214 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-274 |
| Cow position: | chr4:20279435-20279175 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 206 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-274 |
| Cow position: | chr4:31172779-31172506 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-275 |
| Cow position: | chr4:48499923-48499670 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-276 |
| Cow position: | chr4:23758910-23758634 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-279 |
| Cow position: | chr4:2121292-2121567 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 138 |
| Conread position: | 1-279 |
| Cow position: | chr4:10992094-10992372 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-279 |
| Cow position: | chr4:24187495-24187787 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 41, 16 |
| Conread position: | 1-279 |
| Cow position: | chr4:45952281-45952543 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 229, 17 |
| Conread position: | 1-284 |
| Cow position: | chr4:44665265-44665541 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-288 |
| Cow position: | chr4:9548059-9547796 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 66, 18 |
| Conread position: | 1-288 |
| Cow position: | chr4:36813485-36813190 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 17 |
| Conread position: | 1-288 |
| Cow position: | chr4:41602947-41602666 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 43, 18 |
| Conread position: | 1-288 |
| Cow position: | chr4:54146360-54146657 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-289 |
| Cow position: | chr4:21365509-21365222 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-289 |
| Cow position: | chr4:22249342-22249629 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 1-289 |
| Cow position: | chr4:25906233-25906507 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 41, 14 |
| Conread position: | 1-289 |
| Cow position: | chr4:40823005-40823298 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 40, 13 |
| Conread position: | 1-289 |
| Cow position: | chr4:58947814-58948094 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 211 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-290 |
| Cow position: | chr4:39767456-39767166 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 14 |
| Conread position: | 1-304 |
| Cow position: | chr4:50769658-50769965 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 2-229 |
| Cow position: | chr4:5580664-5580436 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 40, 17 |
| Conread position: | 2-249 |
| Cow position: | chr4:24497723-24497961 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 196 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 2-279 |
| Cow position: | chr4:5553690-5553962 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 40, 17 |
| Conread position: | 2-279 |
| Cow position: | chr4:53752628-53752336 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 220 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 2-288 |
| Cow position: | chr4:21259319-21259034 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 2-289 |
| Cow position: | chr4:22528281-22528571 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 3-151 |
| Cow position: | chr4:38877864-38877714 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 38, 21 |
| Conread position: | 3-205 |
| Cow position: | chr4:12996061-12995864 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 39, 19 |
| Conread position: | 3-279 |
| Cow position: | chr4:45919139-45918863 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 15 |
| Conread position: | 3-280 |
| Cow position: | chr4:18439464-18439743 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 16 |
| Conread position: | 3-288 |
| Cow position: | chr4:35471423-35471154 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 215 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 3-288 |
| Cow position: | chr4:35870312-35870033 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 39, 12 |
| Conread position: | 3-289 |
| Cow position: | chr4:22115710-22115423 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 3-289 |
| Cow position: | chr4:40622996-40623279 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 16 |
| Conread position: | 3-290 |
| Cow position: | chr4:19307359-19307076 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 11 |
| Conread position: | 4-183 |
| Cow position: | chr4:3267761-3267941 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 38, 14 |
| Conread position: | 4-222 |
| Cow position: | chr4:21249923-21250144 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 38, 13 |
| Conread position: | 4-235 |
| Cow position: | chr4:58576263-58576482 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 38, 18 |
| Conread position: | 14-249 |
| Cow position: | chr4:53616923-53616691 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 46, 24 |
| Conread position: | 15-249 |
| Cow position: | chr4:1374455-1374224 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 27, 109 |
| Conread position: | 15-272 |
| Cow position: | chr4:6208555-6208300 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 27, 12 |
| Conread position: | 15-289 |
| Cow position: | chr4:25972993-25972714 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 50 |
| Conread position: | 21-289 |
| Cow position: | chr4:53763038-53763301 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 44, 20 |
| Conread position: | 22-274 |
| Cow position: | chr4:33030638-33030384 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 198 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 20, 177 |
| Conread position: | 25-288 |
| Cow position: | chr4:28377580-28377832 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 8, 41 |
| Conread position: | 26-289 |
| Cow position: | chr4:65406286-65406545 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 206 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 39, 154 |
| Conread position: | 27-227 |
| Cow position: | chr4:13340923-13341117 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 15, 55 |
| Conread position: | 31-185 |
| Cow position: | chr4:47243981-47244133 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 11, 112 |
| Conread position: | 39-215 |
| Cow position: | chr4:33667266-33667091 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 26, 100 |
| Conread position: | 48-285 |
| Cow position: | chr4:41154703-41154466 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 89, 16 |
| Conread position: | 64-288 |
| Cow position: | chr4:16339560-16339775 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 112, 79 |
| Conread position: | 66-276 |
| Cow position: | chr4:49001255-49001467 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 186 |
| Conread position: | 78-288 |
| Cow position: | chr4:3440426-3440224 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 96, 71 |
| Conread position: | 79-289 |
| Cow position: | chr4:27561422-27561213 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 103, 62 |
| Conread position: | 80-194 |
| Cow position: | chr4:22713682-22713799 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 82-279 |
| Cow position: | chr4:9912752-9912559 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 62, 44 |
| Conread position: | 82-280 |
| Cow position: | chr4:6792460-6792263 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 149, 119 |
| Conread position: | 86-288 |
| Cow position: | chr4:38181700-38181500 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 56, 110 |
| Conread position: | 86-289 |
| Cow position: | chr4:47773621-47773816 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 52, 119 |
| Conread position: | 87-287 |
| Cow position: | chr4:61399425-61399611 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 53, 23 |
| Conread position: | 102-249 |
| Cow position: | chr4:45116055-45116205 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 36, 94 |
| Conread position: | 104-275 |
| Cow position: | chr4:46861593-46861769 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 127-279 |
| Cow position: | chr4:26541723-26541565 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 12, 80 |
| Conread position: | 137-289 |
| Cow position: | chr4:59719604-59719450 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 42, 77 |
Show alignments to all cow chromosomes.