Cow genome map

Conread name: Ss1.1-Ova1-OVRM10069H08.5

Conread position: 1-170
Cow position: chr5:21194982-21195145 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 137
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 41, 18

Conread position: 1-174
Cow position: chr5:49655887-49656057 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 141
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 64, 11

Conread position: 1-178
Cow position: chr5:36487554-36487735 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 138
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 32, 17

Conread position: 1-186
Cow position: chr5:34279466-34279650 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 146
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 41, 17

Conread position: 1-186
Cow position: chr5:67149877-67150060 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 145
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 41, 17

Conread position: 1-230
Cow position: chr5:59449431-59449665 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 175
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 64, 16

Conread position: 1-232
Cow position: chr5:17267751-17267988 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 178
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 41, 22

Conread position: 1-239
Cow position: chr5:18554033-18553798 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 181
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 41, 11

Conread position: 1-246
Cow position: chr5:4927426-4927675 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 187
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 42, 14

Conread position: 1-249
Cow position: chr5:33265326-33265565 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 197
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 41, 10

Conread position: 1-249
Cow position: chr5:47680877-47681113 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 183
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 41, 17

Conread position: 1-263
Cow position: chr5:58320330-58320590 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 182
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 52, 18

Conread position: 1-266
Cow position: chr5:63188186-63188451 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 17

Conread position: 1-271
Cow position: chr5:29844421-29844147 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 199
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 41, 18

Conread position: 1-275
Cow position: chr5:30978494-30978226 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 205
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 41, 18

Conread position: 1-275
Cow position: chr5:48758081-48757810 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 194
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 42, 13

Conread position: 1-275
Cow position: chr5:59303140-59303408 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 205
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 41, 19

Conread position: 1-276
Cow position: chr5:23529142-23529410 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 195
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 40, 17

Conread position: 1-277
Cow position: chr5:1687974-1688247 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 193
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 41, 17

Conread position: 1-279
Cow position: chr5:14154288-14154007 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 21

Conread position: 1-279
Cow position: chr5:39695792-39695513 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 204
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 41, 17

Conread position: 1-279
Cow position: chr5:41604764-41604475 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 17

Conread position: 1-279
Cow position: chr5:43110690-43110426 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 198
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 41, 16

Conread position: 1-280
Cow position: chr5:3442586-3442315 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 197
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 96, 17

Conread position: 1-281
Cow position: chr5:56385354-56385088 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 216
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 64, 17

Conread position: 1-283
Cow position: chr5:41637005-41636726 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 17

Conread position: 1-284
Cow position: chr5:27411260-27411537 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 211
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 42, 18

Conread position: 1-284
Cow position: chr5:58748910-58748621 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 17

Conread position: 1-287
Cow position: chr5:3752992-3752717 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 222
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 41, 17

Conread position: 1-287
Cow position: chr5:25899733-25900018 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 210
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 40, 15

Conread position: 1-288
Cow position: chr5:17028236-17027945 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 17

Conread position: 1-288
Cow position: chr5:28945919-28946207 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 206
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 41, 21

Conread position: 1-289
Cow position: chr5:30333091-30332793 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 230
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 42, 17

Conread position: 1-289
Cow position: chr5:64399149-64398856 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 17

Conread position: 1-290
Cow position: chr5:19905142-19905428 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 210
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 41, 18

Conread position: 1-290
Cow position: chr5:34184364-34184073 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 17

Conread position: 1-290
Cow position: chr5:61487971-61488259 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 219
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 41, 17

Conread position: 1-292
Cow position: chr5:39442437-39442140 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 16

Conread position: 2-188
Cow position: chr5:45396273-45396459 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 143
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 39, 17

Conread position: 2-276
Cow position: chr5:54090175-54089905 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 202
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 35, 17

Conread position: 2-289
Cow position: chr5:27615652-27615365 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 19

Conread position: 2-289
Cow position: chr5:69773685-69773421 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 215
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 40, 16

Conread position: 3-127
Cow position: chr5:54533124-54533000 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 39, 15

Conread position: 3-220
Cow position: chr5:49946046-49945830 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 157
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 60, 9

Conread position: 3-225
Cow position: chr5:57381685-57381454 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 171
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 18, 149

Conread position: 3-269
Cow position: chr5:13906992-13906737 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 193
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 39, 16

Conread position: 3-276
Cow position: chr5:1343717-1343992 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 16

Conread position: 3-276
Cow position: chr5:37069022-37068758 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 189
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 39, 15

Conread position: 3-279
Cow position: chr5:3649322-3649598 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 12

Conread position: 3-279
Cow position: chr5:6895988-6896263 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 201
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 39, 16

Conread position: 3-279
Cow position: chr5:38629425-38629149 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 14

Conread position: 3-286
Cow position: chr5:50425348-50425625 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 218
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 39, 15

Conread position: 3-287
Cow position: chr5:17869824-17869558 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 212
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 62, 15

Conread position: 3-288
Cow position: chr5:1949919-1950211 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 207
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 67, 15

Conread position: 3-288
Cow position: chr5:26594959-26595254 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 211
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 39, 12

Conread position: 3-289
Cow position: chr5:73526505-73526226 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 222
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 39, 14

Conread position: 4-286
Cow position: chr5:68081835-68082114 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 213
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 38, 14

Conread position: 4-289
Cow position: chr5:35209337-35209627 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 215
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 38, 138

Conread position: 14-279
Cow position: chr5:55989870-55989603 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 127

Conread position: 15-199
Cow position: chr5:41945978-41945786 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 137
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 27, 94

Conread position: 15-280
Cow position: chr5:40387753-40388012 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 190
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 72, 32

Conread position: 15-288
Cow position: chr5:46798371-46798102 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 207
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 21, 14

Conread position: 16-238
Cow position: chr5:21534983-21535215 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 177
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 26, 187

Conread position: 16-249
Cow position: chr5:49567552-49567317 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 161

Conread position: 16-274
Cow position: chr5:22934328-22934588 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 51

Conread position: 16-289
Cow position: chr5:72173145-72172873 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 209
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 57, 26

Conread position: 17-189
Cow position: chr5:2267374-2267206 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 136
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 25, 130

Conread position: 17-267
Cow position: chr5:31561662-31561404 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 192
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 48, 192

Conread position: 18-290
Cow position: chr5:22839351-22839627 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 20

Conread position: 20-289
Cow position: chr5:22643108-22643368 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 187
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 21, 40

Conread position: 23-289
Cow position: chr5:40711319-40711593 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 210
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 19, 160

Conread position: 37-313
Cow position: chr5:48405070-48405350 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 200
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 5, 43

Conread position: 39-289
Cow position: chr5:40234224-40233984 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 182
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 26, 146

Conread position: 40-290
Cow position: chr5:12803613-12803349 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 195
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 85, 110

Conread position: 50-191
Cow position: chr5:60647047-60646907 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 15, 57

Conread position: 58-289
Cow position: chr5:14538578-14538807 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 169
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 62, 22

Conread position: 59-276
Cow position: chr5:17630797-17631003 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 161
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 6, 86

Conread position: 64-276
Cow position: chr5:49479398-49479197 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 162
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 32, 15

Conread position: 64-280
Cow position: chr5:39181839-39182052 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 72

Conread position: 82-285
Cow position: chr5:45940554-45940758 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 162
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 60, 116

Conread position: 83-279
Cow position: chr5:65924636-65924836 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 151
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 96, 12

Conread position: 85-289
Cow position: chr5:62172464-62172268 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 147
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 95, 56

Conread position: 93-279
Cow position: chr5:37713850-37714038 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 162
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 103

Conread position: 102-288
Cow position: chr5:66831675-66831866 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 142
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 38, 94

Conread position: 109-289
Cow position: chr5:41229736-41229562 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 141
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 117, 72

Conread position: 115-289
Cow position: chr5:20974423-20974594 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 140
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 67, 20

Conread position: 133-289
Cow position: chr5:39710849-39710695 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 10, 68

Conread position: 135-288
Cow position: chr5:34232746-34232597 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 30, 68

Conread position: 154-279
Cow position: chr5:46294679-46294804 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 21, 49

Conread position: 156-289
Cow position: chr5:56753711-56753575 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 112
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 26, 98

Show alignments to all cow chromosomes.