Cow genome map

Conread name: Ss1.1-Ova1-OVRM10069H08.5

Conread position: 1-176
Cow position: chr9:17110688-17110863 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 144
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 41, 17

Conread position: 1-201
Cow position: chr9:49651643-49651843 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 159
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 64, 11

Conread position: 1-205
Cow position: chr9:50828008-50827809 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 155
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 38, 17

Conread position: 1-207
Cow position: chr9:18237242-18237053 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 153
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 64, 11

Conread position: 1-208
Cow position: chr9:50598398-50598191 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 154
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 41, 17

Conread position: 1-221
Cow position: chr9:15033823-15034045 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 17

Conread position: 1-222
Cow position: chr9:5172247-5172470 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 177
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 41, 17

Conread position: 1-226
Cow position: chr9:34725595-34725368 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 177
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 85, 17

Conread position: 1-230
Cow position: chr9:24837452-24837675 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 179
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 41, 17

Conread position: 1-249
Cow position: chr9:20896817-20897067 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 200
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 64, 17

Conread position: 1-249
Cow position: chr9:55562411-55562660 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 183
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 40, 18

Conread position: 1-264
Cow position: chr9:41957721-41957983 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 17

Conread position: 1-264
Cow position: chr9:46252738-46252990 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 201
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 37, 17

Conread position: 1-269
Cow position: chr9:35368559-35368825 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 195
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 42, 18

Conread position: 1-271
Cow position: chr9:34106628-34106909 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 213
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 41, 11

Conread position: 1-276
Cow position: chr9:3931877-3932155 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 212
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 42, 18

Conread position: 1-276
Cow position: chr9:3958981-3959248 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 202
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 41, 20

Conread position: 1-276
Cow position: chr9:15684872-15684599 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 203
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 64, 17

Conread position: 1-276
Cow position: chr9:35708704-35708433 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 199
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 41, 18

Conread position: 1-279
Cow position: chr9:15006834-15006560 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 17

Conread position: 1-279
Cow position: chr9:16745593-16745871 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 196
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 20, 76

Conread position: 1-279
Cow position: chr9:38546333-38546609 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 23

Conread position: 1-279
Cow position: chr9:39152765-39152487 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 16

Conread position: 1-279
Cow position: chr9:58669296-58669572 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 18

Conread position: 1-280
Cow position: chr9:4858449-4858738 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 215
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 36, 17

Conread position: 1-283
Cow position: chr9:19382245-19382523 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 17

Conread position: 1-284
Cow position: chr9:48133646-48133929 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 31

Conread position: 1-285
Cow position: chr9:9315220-9315502 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 199
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 44, 17

Conread position: 1-287
Cow position: chr9:8657516-8657231 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 214
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 42, 17

Conread position: 1-288
Cow position: chr9:9200807-9200521 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 17

Conread position: 1-288
Cow position: chr9:23042692-23042980 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 207
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 40, 18

Conread position: 1-288
Cow position: chr9:25468970-25469236 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 206
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 64, 12

Conread position: 1-288
Cow position: chr9:43037397-43037687 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 210
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 41, 18

Conread position: 1-288
Cow position: chr9:47925838-47926111 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 210
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 44, 17

Conread position: 1-288
Cow position: chr9:48773264-48773545 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 220
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 42, 17

Conread position: 1-289
Cow position: chr9:11102885-11102610 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 18

Conread position: 1-289
Cow position: chr9:18093728-18093458 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 218
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 41, 17

Conread position: 1-289
Cow position: chr9:20039215-20038947 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 219
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 41, 17

Conread position: 1-289
Cow position: chr9:20839543-20839819 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 17

Conread position: 1-289
Cow position: chr9:32817227-32816929 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 17

Conread position: 1-289
Cow position: chr9:59924466-59924748 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 214
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 64, 17

Conread position: 1-290
Cow position: chr9:2114092-2113803 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 217
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 42, 18

Conread position: 1-290
Cow position: chr9:34309943-34310235 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 18

Conread position: 1-290
Cow position: chr9:54206410-54206126 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 210
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 42, 18

Conread position: 1-344
Cow position: chr9:46242343-46241998 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 254
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 41, 18

Conread position: 2-180
Cow position: chr9:50522422-50522254 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 63, 16

Conread position: 2-247
Cow position: chr9:8617734-8617965 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 182
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 64, 19

Conread position: 2-280
Cow position: chr9:42037568-42037849 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 207
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 35, 16

Conread position: 2-288
Cow position: chr9:10667108-10666820 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 207
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 41, 16

Conread position: 2-288
Cow position: chr9:15951241-15950955 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 222
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 63, 16

Conread position: 3-161
Cow position: chr9:38927000-38927158 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 59, 15

Conread position: 3-170
Cow position: chr9:40007778-40007944 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 131
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 39, 15

Conread position: 3-235
Cow position: chr9:34204046-34204282 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 184
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 39, 15

Conread position: 3-241
Cow position: chr9:30019897-30020125 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 187
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 39, 16

Conread position: 3-276
Cow position: chr9:56860932-56861206 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 15

Conread position: 3-279
Cow position: chr9:3594600-3594335 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 199
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 39, 14

Conread position: 3-279
Cow position: chr9:8914198-8914457 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 201
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 40, 16

Conread position: 3-279
Cow position: chr9:14184582-14184866 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 15

Conread position: 3-279
Cow position: chr9:32266471-32266196 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 197
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 39, 15

Conread position: 3-279
Cow position: chr9:39428884-39428605 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 12

Conread position: 3-281
Cow position: chr9:64007965-64007668 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 214
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 39, 16

Conread position: 3-287
Cow position: chr9:32847806-32848094 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 15

Conread position: 3-288
Cow position: chr9:10981196-10980912 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 217
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 62, 16

Conread position: 3-289
Cow position: chr9:18110947-18110660 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 15

Conread position: 3-289
Cow position: chr9:21462949-21462645 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 228
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 39, 15

Conread position: 5-160
Cow position: chr9:43926191-43926036 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 37, 14

Conread position: 5-289
Cow position: chr9:34093515-34093220 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 223
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 60, 32

Conread position: 11-286
Cow position: chr9:12355781-12356058 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 201
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 10, 39

Conread position: 15-275
Cow position: chr9:29808381-29808653 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 189
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 48, 249

Conread position: 15-288
Cow position: chr9:28947788-28948056 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 183
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 26, 129

Conread position: 15-288
Cow position: chr9:43911856-43912133 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 212
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 27, 36

Conread position: 16-250
Cow position: chr9:61195210-61195446 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 169
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 26, 48

Conread position: 16-267
Cow position: chr9:32624935-32625187 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 189
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 27, 134

Conread position: 16-284
Cow position: chr9:44108906-44108631 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 213
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 26, 90

Conread position: 16-289
Cow position: chr9:11201517-11201794 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 219
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 26, 186

Conread position: 16-289
Cow position: chr9:11363824-11364097 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 181

Conread position: 17-176
Cow position: chr9:20200221-20200385 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 25, 112

Conread position: 17-279
Cow position: chr9:10127738-10127477 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 196
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 26, 57

Conread position: 17-288
Cow position: chr9:44552675-44552951 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 205
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 25, 128

Conread position: 18-215
Cow position: chr9:18206576-18206378 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 148
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 24, 185

Conread position: 18-279
Cow position: chr9:56252830-56253092 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 92

Conread position: 18-290
Cow position: chr9:214531-214263 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 121

Conread position: 20-284
Cow position: chr9:52633559-52633295 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 63

Conread position: 20-289
Cow position: chr9:11319703-11319427 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 193
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 14, 7

Conread position: 21-302
Cow position: chr9:5141004-5141298 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 207
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 18, 194

Conread position: 22-267
Cow position: chr9:54924553-54924805 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 178
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 20, 29

Conread position: 23-228
Cow position: chr9:20389196-20388985 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 154
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 18, 71

Conread position: 23-235
Cow position: chr9:23943213-23943434 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 163
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 22, 198

Conread position: 39-202
Cow position: chr9:58699164-58698990 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 138
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 26, 0

Conread position: 39-286
Cow position: chr9:5029461-5029717 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 194
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 26, 161

Conread position: 39-288
Cow position: chr9:30440654-30440399 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 180
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 50, 147

Conread position: 39-289
Cow position: chr9:58853462-58853720 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 194
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 26, 87

Conread position: 41-289
Cow position: chr9:12183701-12183957 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 178
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 24, 63

Conread position: 42-289
Cow position: chr9:23527831-23527591 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 185
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 23, 160

Conread position: 44-287
Cow position: chr9:52787582-52787334 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 213

Conread position: 64-279
Cow position: chr9:42901023-42901239 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 169
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 24, 35

Conread position: 64-289
Cow position: chr9:24399703-24399481 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 166
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 81, 131

Conread position: 78-298
Cow position: chr9:3725068-3724849 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 169
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 106, 75

Conread position: 85-276
Cow position: chr9:8950907-8951097 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 143
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 94, 110

Conread position: 98-279
Cow position: chr9:30189111-30189291 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 132
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 40, 27

Conread position: 106-279
Cow position: chr9:8612302-8612478 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 140
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 42, 102

Conread position: 115-279
Cow position: chr9:8600359-8600529 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 64, 0

Conread position: 118-290
Cow position: chr9:43814477-43814643 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 130
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 30, 84

Conread position: 133-279
Cow position: chr9:26828772-26828630 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 94, 38

Show alignments to all cow chromosomes.