Cow genome map

Conread name: Ss1.1-Ova1-OVRM10069H08.5

Conread position: 1-136
Cow position:
Alignm length: 138
Alignm identity: 108
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 41, 13

Conread position: 1-145
Cow position:
Alignm length: 152
Alignm identity: 122
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 38, 14

Conread position: 1-180
Cow position:
Alignm length: 184
Alignm identity: 107
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 41, 17

Conread position: 1-212
Cow position:
Alignm length: 216
Alignm identity: 153
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 64, 18

Conread position: 1-230
Cow position:
Alignm length: 234
Alignm identity: 168
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 61, 17

Conread position: 1-235
Cow position:
Alignm length: 240
Alignm identity: 180
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 64, 17

Conread position: 1-241
Cow position:
Alignm length: 252
Alignm identity: 181
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 39, 17

Conread position: 1-263
Cow position:
Alignm length: 268
Alignm identity: 198
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 39, 21

Conread position: 1-264
Cow position:
Alignm length: 265
Alignm identity: 197
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 64, 17

Conread position: 1-275
Cow position:
Alignm length: 276
Alignm identity: 207
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 41, 17

Conread position: 1-276
Cow position:
Alignm length: 287
Alignm identity: 194
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 41, 17

Conread position: 1-279
Cow position:
Alignm length: 284
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 17

Conread position: 1-279
Cow position:
Alignm length: 284
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 18

Conread position: 1-279
Cow position:
Alignm length: 290
Alignm identity: 206
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 41, 17

Conread position: 1-279
Cow position:
Alignm length: 291
Alignm identity: 218
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 41, 17

Conread position: 1-279
Cow position:
Alignm length: 288
Alignm identity: 200
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 40, 17

Conread position: 1-280
Cow position:
Alignm length: 284
Alignm identity: 208
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 38, 21

Conread position: 1-284
Cow position:
Alignm length: 293
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 17

Conread position: 1-288
Cow position:
Alignm length: 296
Alignm identity: 211
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 41, 17

Conread position: 1-288
Cow position:
Alignm length: 298
Alignm identity: 217
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 65, 17

Conread position: 1-288
Cow position:
Alignm length: 296
Alignm identity: 203
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 41, 20

Conread position: 1-288
Cow position:
Alignm length: 299
Alignm identity: 208
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 62, 17

Conread position: 1-288
Cow position:
Alignm length: 292
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 11

Conread position: 1-288
Cow position:
Alignm length: 294
Alignm identity: 219
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 64, 17

Conread position: 1-288
Cow position:
Alignm length: 304
Alignm identity: 213
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 41, 20

Conread position: 1-289
Cow position:
Alignm length: 298
Alignm identity: 222
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 41, 17

Conread position: 1-289
Cow position:
Alignm length: 306
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 18

Conread position: 1-289
Cow position:
Alignm length: 299
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 17

Conread position: 1-289
Cow position:
Alignm length: 293
Alignm identity: 207
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 41, 18

Conread position: 1-289
Cow position:
Alignm length: 300
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 17

Conread position: 1-289
Cow position:
Alignm length: 298
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 17

Conread position: 1-290
Cow position:
Alignm length: 300
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 17

Conread position: 2-185
Cow position:
Alignm length: 192
Alignm identity: 143
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 40, 16

Conread position: 2-275
Cow position:
Alignm length: 285
Alignm identity: 208
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 39, 16

Conread position: 2-279
Cow position:
Alignm length: 290
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 16

Conread position: 2-288
Cow position:
Alignm length: 298
Alignm identity: 212
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 39, 16

Conread position: 2-290
Cow position:
Alignm length: 297
Alignm identity: 205
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 51, 17

Conread position: 2-290
Cow position:
Alignm length: 299
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 16

Conread position: 3-162
Cow position:
Alignm length: 166
Alignm identity: 124
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 37, 15

Conread position: 3-173
Cow position:
Alignm length: 176
Alignm identity: 136
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 39, 19

Conread position: 3-199
Cow position:
Alignm length: 204
Alignm identity: 151
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 44, 16

Conread position: 3-216
Cow position:
Alignm length: 219
Alignm identity: 158
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 39, 16

Conread position: 3-222
Cow position:
Alignm length: 225
Alignm identity: 168
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 39, 15

Conread position: 3-230
Cow position:
Alignm length: 232
Alignm identity: 169
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 38, 16

Conread position: 3-273
Cow position:
Alignm length: 277
Alignm identity: 207
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 39, 16

Conread position: 3-275
Cow position:
Alignm length: 279
Alignm identity: 205
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 37, 16

Conread position: 3-275
Cow position:
Alignm length: 283
Alignm identity: 189
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 37, 18

Conread position: 3-277
Cow position:
Alignm length: 284
Alignm identity: 211
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 39, 9

Conread position: 3-279
Cow position:
Alignm length: 286
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 16

Conread position: 3-279
Cow position:
Alignm length: 293
Alignm identity: 197
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 55, 17

Conread position: 3-279
Cow position:
Alignm length: 281
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 15

Conread position: 3-284
Cow position:
Alignm length: 293
Alignm identity: 211
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 36, 94

Conread position: 3-284
Cow position:
Alignm length: 288
Alignm identity: 209
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 62, 16

Conread position: 3-289
Cow position:
Alignm length: 295
Alignm identity: 217
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 62, 15

Conread position: 3-289
Cow position:
Alignm length: 298
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 15

Conread position: 3-289
Cow position:
Alignm length: 302
Alignm identity: 224
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 39, 15

Conread position: 3-289
Cow position:
Alignm length: 293
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 16

Conread position: 3-289
Cow position:
Alignm length: 301
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 16

Conread position: 4-222
Cow position:
Alignm length: 222
Alignm identity: 168
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 38, 15

Conread position: 4-275
Cow position:
Alignm length: 280
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 11

Conread position: 5-289
Cow position:
Alignm length: 301
Alignm identity: 224
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 37, 13

Conread position: 12-289
Cow position:
Alignm length: 286
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 91

Conread position: 13-289
Cow position:
Alignm length: 283
Alignm identity: 191
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 22, 14

Conread position: 14-267
Cow position:
Alignm length: 258
Alignm identity: 184
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 128, 25

Conread position: 15-185
Cow position:
Alignm length: 172
Alignm identity: 136
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 28, 51

Conread position: 15-187
Cow position:
Alignm length: 179
Alignm identity: 128
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 15-199
Cow position:
Alignm length: 188
Alignm identity: 141
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 27, 44

Conread position: 15-222
Cow position:
Alignm length: 212
Alignm identity: 153
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 27, 109

Conread position: 15-266
Cow position:
Alignm length: 262
Alignm identity: 183
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 27, 140

Conread position: 15-275
Cow position:
Alignm length: 270
Alignm identity: 194
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 27, 117

Conread position: 15-276
Cow position:
Alignm length: 272
Alignm identity: 191
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 28, 196

Conread position: 15-277
Cow position:
Alignm length: 266
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 13

Conread position: 15-290
Cow position:
Alignm length: 285
Alignm identity: 203
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 27, 144

Conread position: 16-199
Cow position:
Alignm length: 189
Alignm identity: 141
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 49, 22

Conread position: 16-290
Cow position:
Alignm length: 285
Alignm identity: 198
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 26, 133

Conread position: 17-228
Cow position:
Alignm length: 216
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 187

Conread position: 17-239
Cow position:
Alignm length: 231
Alignm identity: 172
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 43, 20

Conread position: 17-286
Cow position:
Alignm length: 280
Alignm identity: 202
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 24, 185

Conread position: 17-287
Cow position:
Alignm length: 279
Alignm identity: 202
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 26, 109

Conread position: 17-288
Cow position:
Alignm length: 291
Alignm identity: 216
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 37, 21

Conread position: 18-230
Cow position:
Alignm length: 218
Alignm identity: 166
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 8, 152

Conread position: 19-241
Cow position:
Alignm length: 230
Alignm identity: 164
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 23, 129

Conread position: 20-288
Cow position:
Alignm length: 273
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 73

Conread position: 20-288
Cow position:
Alignm length: 272
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 18

Conread position: 20-289
Cow position:
Alignm length: 279
Alignm identity: 197
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 22, 61

Conread position: 21-219
Cow position:
Alignm length: 201
Alignm identity: 142
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 21, 69

Conread position: 25-288
Cow position:
Alignm length: 272
Alignm identity: 198
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 17, 36

Conread position: 25-290
Cow position:
Alignm length: 276
Alignm identity: 190
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 7, 61

Conread position: 26-284
Cow position:
Alignm length: 263
Alignm identity: 183
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 16, 165

Conread position: 33-276
Cow position:
Alignm length: 249
Alignm identity: 173
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 32, 144

Conread position: 39-289
Cow position:
Alignm length: 256
Alignm identity: 187
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 26, 36

Conread position: 40-290
Cow position:
Alignm length: 258
Alignm identity: 173
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 13, 159

Conread position: 43-289
Cow position:
Alignm length: 254
Alignm identity: 176
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 22, 156

Conread position: 47-248
Cow position:
Alignm length: 212
Alignm identity: 149
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 14, 164

Conread position: 51-288
Cow position:
Alignm length: 244
Alignm identity: 171
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 19, 35

Conread position: 66-275
Cow position:
Alignm length: 212
Alignm identity: 162
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 114, 19

Conread position: 71-288
Cow position:
Alignm length: 221
Alignm identity: 165
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 103, 123

Conread position: 75-193
Cow position:
Alignm length: 120
Alignm identity: 97
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 107, 113

Conread position: 75-231
Cow position:
Alignm length: 160
Alignm identity: 123
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 15, 129

Conread position: 79-289
Cow position:
Alignm length: 213
Alignm identity: 156
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 105, 64

Conread position: 81-288
Cow position:
Alignm length: 210
Alignm identity: 147
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 61, 19

Conread position: 82-276
Cow position:
Alignm length: 196
Alignm identity: 155
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 145, 37

Conread position: 82-288
Cow position:
Alignm length: 209
Alignm identity: 148
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 94, 121

Conread position: 85-275
Cow position:
Alignm length: 195
Alignm identity: 151
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 57, 111

Conread position: 85-275
Cow position:
Alignm length: 195
Alignm identity: 151
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 57, 111

Conread position: 85-288
Cow position:
Alignm length: 210
Alignm identity: 152
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 94, 41

Conread position: 88-275
Cow position:
Alignm length: 192
Alignm identity: 139
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 70, 137

Conread position: 88-289
Cow position:
Alignm length: 206
Alignm identity: 147
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 91, 130

Conread position: 88-290
Cow position:
Alignm length: 213
Alignm identity: 162
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 7, 116

Conread position: 98-288
Cow position:
Alignm length: 194
Alignm identity: 146
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 59, 55

Conread position: 100-288
Cow position:
Alignm length: 191
Alignm identity: 140
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 107, 92

Conread position: 108-279
Cow position:
Alignm length: 176
Alignm identity: 135
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 43, 96

Conread position: 110-289
Cow position:
Alignm length: 184
Alignm identity: 141
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 26, 56

Conread position: 111-280
Cow position:
Alignm length: 174
Alignm identity: 126
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 33, 85

Conread position: 113-289
Cow position:
Alignm length: 185
Alignm identity: 142
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 29, 91

Conread position: 116-279
Cow position:
Alignm length: 168
Alignm identity: 127
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 23, 80

Conread position: 131-289
Cow position:
Alignm length: 162
Alignm identity: 121
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 7, 23

Conread position: 135-271
Cow position:
Alignm length: 140
Alignm identity: 114
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 46, 68

Conread position: 141-288
Cow position:
Alignm length: 153
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 41, 81

Conread position: 144-289
Cow position:
Alignm length: 150
Alignm identity: 118
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 13, 60

Show alignments to all cow chromosomes.