Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10083G01.5 |
| Conread position: | 2-206 |
| Cow position: | chr19:14948292-14948088 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 138, 146 |
| Conread position: | 2-206 |
| Cow position: | chr19:20635205-20635002 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 2-206 |
| Cow position: | chr19:23614867-23615071 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-256 |
| Cow position: | chr19:14959562-14959308 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 223, 205 |
| Conread position: | 2-274 |
| Cow position: | chr19:14940751-14941023 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 223, 228 |
| Conread position: | 2-275 |
| Cow position: | chr19:20635290-20635017 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-278 |
| Cow position: | chr19:23614027-23614303 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 198 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 60, 42 |
| Conread position: | 2-280 |
| Cow position: | chr19:20678462-20678738 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 83, 96 |
| Conread position: | 2-282 |
| Cow position: | chr19:23597372-23597652 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 209, 218 |
| Conread position: | 2-283 |
| Cow position: | chr19:23614363-23614644 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 39, 48 |
| Conread position: | 2-284 |
| Cow position: | chr19:14959151-14958875 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 2-284 |
| Cow position: | chr19:20678378-20678660 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 218, 207 |
| Conread position: | 2-284 |
| Cow position: | chr19:23649645-23649927 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 46, 52 |
| Conread position: | 2-289 |
| Cow position: | chr19:20635458-20635171 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 201 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 50, 32 |
| Conread position: | 2-289 |
| Cow position: | chr19:23613439-23613726 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 197 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-289 |
| Cow position: | chr19:23614783-23615070 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 132, 142 |
| Conread position: | 2-328 |
| Cow position: | chr19:20635374-20635045 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 46, 50 |
| Conread position: | 2-336 |
| Cow position: | chr19:23650149-23650486 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 233 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 37, 42 |
| Conread position: | 2-338 |
| Cow position: | chr19:23614111-23614450 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 206 |
| Conread position: | 2-338 |
| Cow position: | chr19:23614447-23614786 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 37, 47 |
| Conread position: | 2-340 |
| Cow position: | chr19:14960216-14959876 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 229 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 289, 67 |
| Conread position: | 2-341 |
| Cow position: | chr19:43570049-43569708 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 231 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 142, 132 |
| Conread position: | 2-346 |
| Cow position: | chr19:23650065-23650412 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 213, 218 |
| Conread position: | 2-349 |
| Cow position: | chr19:23649729-23650079 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 107, 114 |
| Conread position: | 2-356 |
| Cow position: | chr19:14940499-14940856 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 228, 222 |
| Conread position: | 2-356 |
| Cow position: | chr19:23649477-23649834 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 213, 218 |
| Conread position: | 2-357 |
| Cow position: | chr19:14940079-14940437 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 239 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 209, 218 |
| Conread position: | 2-357 |
| Cow position: | chr19:14940583-14940941 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 241 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 60, 50 |
| Conread position: | 2-357 |
| Cow position: | chr19:20635626-20635268 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 213, 228 |
| Conread position: | 2-357 |
| Cow position: | chr19:20677538-20677896 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 60, 43 |
| Conread position: | 2-357 |
| Cow position: | chr19:20677958-20678316 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 237 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 59, 42 |
| Conread position: | 2-357 |
| Cow position: | chr19:20678126-20678484 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 241 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 60, 43 |
| Conread position: | 2-357 |
| Cow position: | chr19:23597288-23597646 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 206 |
| Conread position: | 2-357 |
| Cow position: | chr19:23613523-23613881 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 46, 31 |
| Conread position: | 2-357 |
| Cow position: | chr19:23613607-23613965 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 241 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 210, 217 |
| Conread position: | 2-357 |
| Cow position: | chr19:23614195-23614553 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 53, 42 |
| Conread position: | 2-357 |
| Cow position: | chr19:23614279-23614637 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 206, 217 |
| Conread position: | 2-357 |
| Cow position: | chr19:23614531-23614889 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 236 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 40, 31 |
| Conread position: | 2-357 |
| Cow position: | chr19:23649813-23650171 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 293, 0 |
| Conread position: | 2-357 |
| Cow position: | chr19:43570133-43569775 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 247 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 41, 37 |
| Conread position: | 2-364 |
| Cow position: | chr19:14915968-14916327 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 51, 124 |
| Conread position: | 2-366 |
| Cow position: | chr19:14940331-14940698 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 0 |
| Conread position: | 2-366 |
| Cow position: | chr19:20635542-20635175 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 247 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 211, 219 |
| Conread position: | 2-366 |
| Cow position: | chr19:20677454-20677821 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 206, 218 |
| Conread position: | 2-366 |
| Cow position: | chr19:23613859-23614226 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 247 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 228, 208 |
| Conread position: | 2-366 |
| Cow position: | chr19:23614615-23614982 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 234 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 205, 217 |
| Conread position: | 2-387 |
| Cow position: | chr19:14960383-14959998 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 254 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 289, 5 |
| Conread position: | 2-387 |
| Cow position: | chr19:20678042-20678430 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 246 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 35, 41 |
| Conread position: | 2-387 |
| Cow position: | chr19:23613775-23614163 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 308, 296 |
| Conread position: | 2-403 |
| Cow position: | chr19:23613355-23613759 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 261 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 40, 51 |
| Conread position: | 3-357 |
| Cow position: | chr19:14940248-14940605 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 36, 49 |
| Conread position: | 3-357 |
| Cow position: | chr19:23597121-23597478 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 238 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 208, 217 |
| Conread position: | 4-281 |
| Cow position: | chr19:14960048-14959773 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 235, 0 |
| Conread position: | 4-281 |
| Cow position: | chr19:23597206-23597483 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 197 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 44, 50 |
| Conread position: | 4-282 |
| Cow position: | chr19:14960132-14959854 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 194 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 219, 226 |
| Conread position: | 4-282 |
| Cow position: | chr19:23649563-23649842 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 272, 0 |
| Conread position: | 4-284 |
| Cow position: | chr19:20677876-20678156 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 43, 36 |
| Conread position: | 4-340 |
| Cow position: | chr19:23596957-23597293 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 213 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 292, 79 |
| Conread position: | 4-357 |
| Cow position: | chr19:20677708-20678064 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 243 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 45, 58 |
| Conread position: | 4-357 |
| Cow position: | chr19:23613693-23614049 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 218, 208 |
| Conread position: | 4-372 |
| Cow position: | chr19:20678296-20678667 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 215 |
| Conread position: | 7-294 |
| Cow position: | chr19:20678215-20678502 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 201 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 41, 45 |
| Conread position: | 7-399 |
| Cow position: | chr19:23649902-23650297 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 259 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 46, 28 |
| Conread position: | 8-357 |
| Cow position: | chr19:14940001-14940353 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 0 |
| Conread position: | 8-357 |
| Cow position: | chr19:14940421-14940773 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 212, 203 |
| Conread position: | 8-357 |
| Cow position: | chr19:14948453-14948102 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 299, 49 |
| Conread position: | 10-387 |
| Cow position: | chr19:20635702-20635322 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 54, 24 |
| Conread position: | 11-284 |
| Cow position: | chr19:20677631-20677904 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 37, 41 |
| Conread position: | 11-357 |
| Cow position: | chr19:23649402-23649751 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 37, 41 |
| Conread position: | 12-337 |
| Cow position: | chr19:14959636-14959308 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 215 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 279, 0 |
| Conread position: | 13-356 |
| Cow position: | chr19:14940678-14941024 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 232 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 49, 43 |
| Conread position: | 13-357 |
| Cow position: | chr19:14940174-14940521 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 0 |
| Conread position: | 19-284 |
| Cow position: | chr19:14948359-14948094 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-395 |
| Cow position: | chr19:43570278-43569905 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 262 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 193, 17 |
| Conread position: | 55-366 |
| Cow position: | chr19:14960415-14960103 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 261, 0 |
| Conread position: | 61-366 |
| Cow position: | chr19:23597095-23597403 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 51, 75 |
| Conread position: | 79-381 |
| Cow position: | chr19:14939988-14940293 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 228, 297 |
| Conread position: | 82-357 |
| Cow position: | chr19:23613351-23613629 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 209, 0 |
Show alignments to all cow chromosomes.