Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10083G01.5 |
| Conread position: | 1-323 |
| Cow position: | chr23:25698400-25698075 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 77, 92 |
| Conread position: | 2-176 |
| Cow position: | chr23:24654206-24654380 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 43, 31 |
| Conread position: | 2-189 |
| Cow position: | chr23:24626565-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 37, 42 |
| Conread position: | 2-209 |
| Cow position: | chr23:24522395-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-255 |
| Cow position: | chr23:24560381-24560128 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 209, 216 |
| Conread position: | 2-284 |
| Cow position: | chr23:24546989-24546707 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 50, 38 |
| Conread position: | 2-323 |
| Cow position: | chr23:25724038-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 60, 55 |
| Conread position: | 2-325 |
| Cow position: | chr23:25626620-25626946 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 38, 52 |
| Conread position: | 2-328 |
| Cow position: | chr23:24639557-24639886 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 222 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 129, 116 |
| Conread position: | 2-337 |
| Cow position: | chr23:25660408-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 225 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 300, 0 |
| Conread position: | 2-338 |
| Cow position: | chr23:25626287-25626623 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 213, 218 |
| Conread position: | 2-357 |
| Cow position: | chr23:24535956-24535598 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 292, 0 |
| Conread position: | 2-357 |
| Cow position: | chr23:24547073-24546715 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 38 |
| Conread position: | 2-357 |
| Cow position: | chr23:24560801-24560443 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 76, 90 |
| Conread position: | 2-357 |
| Cow position: | chr23:24639389-24639747 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 300, 284 |
| Conread position: | 2-357 |
| Cow position: | chr23:25660324-25660682 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 43, 32 |
| Conread position: | 2-365 |
| Cow position: | chr23:24547157-24546791 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 248 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 43, 32 |
| Conread position: | 2-365 |
| Cow position: | chr23:24639473-24639839 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 239 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 276, 0 |
| Conread position: | 2-366 |
| Cow position: | chr23:24547241-24546874 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 245 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 43, 38 |
| Conread position: | 2-366 |
| Cow position: | chr23:25698483-25698116 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 237 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 160, 175 |
| Conread position: | 2-367 |
| Cow position: | chr23:24536040-24535673 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 43, 37 |
| Conread position: | 2-381 |
| Cow position: | chr23:24560717-24560335 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 248 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 300, 284 |
| Conread position: | 3-278 |
| Cow position: | chr23:24535787-24535512 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 217, 205 |
| Conread position: | 3-339 |
| Cow position: | chr23:25626705-25627044 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 39, 30 |
| Conread position: | 3-342 |
| Cow position: | chr23:24626398-24626739 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 226 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 292, 327 |
| Conread position: | 3-357 |
| Cow position: | chr23:24560884-24560527 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 49, 36 |
| Conread position: | 4-246 |
| Cow position: | chr23:24546903-24546661 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 42, 36 |
| Conread position: | 4-284 |
| Cow position: | chr23:24639727-24640007 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-338 |
| Cow position: | chr23:25660242-25660579 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 274, 0 |
| Conread position: | 4-339 |
| Cow position: | chr23:24560463-24560125 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 0 |
| Conread position: | 4-341 |
| Cow position: | chr23:25698565-25698225 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 241, 259 |
| Conread position: | 4-343 |
| Cow position: | chr23:24522642-24522303 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 70, 41 |
| Conread position: | 4-343 |
| Cow position: | chr23:24639643-24639985 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 33, 42 |
| Conread position: | 4-351 |
| Cow position: | chr23:24654124-24654470 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 205, 216 |
| Conread position: | 4-377 |
| Cow position: | chr23:24522561-24522185 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 286, 0 |
| Conread position: | 6-357 |
| Cow position: | chr23:24639225-24639579 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 38, 25 |
| Conread position: | 7-278 |
| Cow position: | chr23:24654043-24654314 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-281 |
| Cow position: | chr23:24535867-24535593 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 205, 214 |
| Conread position: | 7-338 |
| Cow position: | chr23:25626544-25626875 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 42 |
| Conread position: | 7-357 |
| Cow position: | chr23:24547320-24546967 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 242 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 8-281 |
| Cow position: | chr23:25698645-25698372 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 54, 48 |
| Conread position: | 8-357 |
| Cow position: | chr23:24626319-24626671 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 231 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 270, 0 |
| Conread position: | 10-396 |
| Cow position: | chr23:25660164-25660553 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 254 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 43, 29 |
| Conread position: | 13-357 |
| Cow position: | chr23:24639316-24639663 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 32, 21 |
| Conread position: | 19-340 |
| Cow position: | chr23:25724105-25723781 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 224 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 33, 20 |
| Conread position: | 34-337 |
| Cow position: | chr23:25625982-25626289 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 50-357 |
| Cow position: | chr23:24626277-24626587 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 252, 244 |
| Conread position: | 61-396 |
| Cow position: | chr23:25626094-25626432 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 150, 159 |
| Conread position: | 65-357 |
| Cow position: | chr23:25724143-25723848 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 220, 0 |
| Conread position: | 75-357 |
| Cow position: | chr23:25660145-25660430 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 137, 146 |
| Conread position: | 82-357 |
| Cow position: | chr23:24547329-24547051 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 148, 133 |
Show alignments to all cow chromosomes.