Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10083G01.5 |
| Conread position: | 1-281 |
| Cow position: | chr25:326500-326780 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 50, 39 |
| Conread position: | 2-202 |
| Cow position: | chr25:34433024-34433224 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 138, 142 |
| Conread position: | 2-242 |
| Cow position: | chr25:23420639-23420879 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 40, 48 |
| Conread position: | 2-243 |
| Cow position: | chr25:36801715-36801956 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 50, 37 |
| Conread position: | 2-254 |
| Cow position: | chr25:34769448-34769196 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 46, 50 |
| Conread position: | 2-265 |
| Cow position: | chr25:33127974-33128237 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 213, 218 |
| Conread position: | 2-279 |
| Cow position: | chr25:34732520-34732243 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 198, 216 |
| Conread position: | 2-281 |
| Cow position: | chr25:34769532-34769252 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 60, 55 |
| Conread position: | 2-281 |
| Cow position: | chr25:36801547-36801826 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 46, 60 |
| Conread position: | 2-293 |
| Cow position: | chr25:33298987-33299278 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 213, 218 |
| Conread position: | 2-319 |
| Cow position: | chr25:33298483-33298803 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 80, 88 |
| Conread position: | 2-328 |
| Cow position: | chr25:34714122-34714451 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 51, 26 |
| Conread position: | 2-341 |
| Cow position: | chr25:33157133-33156791 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 228 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 137, 142 |
| Conread position: | 2-357 |
| Cow position: | chr25:23420471-23420829 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 243 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 35, 50 |
| Conread position: | 2-357 |
| Cow position: | chr25:33144937-33145292 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 86, 75 |
| Conread position: | 2-357 |
| Cow position: | chr25:33298567-33298925 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 305, 0 |
| Conread position: | 2-357 |
| Cow position: | chr25:34447110-34447468 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 237 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 289, 0 |
| Conread position: | 2-357 |
| Cow position: | chr25:34447278-34447636 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 218, 207 |
| Conread position: | 2-357 |
| Cow position: | chr25:36800719-36801077 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 208, 216 |
| Conread position: | 2-366 |
| Cow position: | chr25:33157385-33157018 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 206 |
| Conread position: | 2-399 |
| Cow position: | chr25:34770036-34769636 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 50 |
| Conread position: | 2-403 |
| Cow position: | chr25:34769700-34769296 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 218 |
| Conread position: | 2-405 |
| Cow position: | chr25:23420387-23420792 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 267 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 37, 48 |
| Conread position: | 3-284 |
| Cow position: | chr25:34732603-34732321 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 109, 143 |
| Conread position: | 3-326 |
| Cow position: | chr25:34447363-34447689 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 275, 0 |
| Conread position: | 3-345 |
| Cow position: | chr25:34447531-34447867 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 231 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 293, 172 |
| Conread position: | 4-252 |
| Cow position: | chr25:33145188-33145436 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-266 |
| Cow position: | chr25:22235835-22236097 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 58, 43 |
| Conread position: | 4-274 |
| Cow position: | chr25:34732098-34731828 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 140, 123 |
| Conread position: | 4-281 |
| Cow position: | chr25:366731-367008 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 144, 150 |
| Conread position: | 4-281 |
| Cow position: | chr25:23420557-23420835 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 196 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 43, 48 |
| Conread position: | 4-281 |
| Cow position: | chr25:33145104-33145381 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 46, 35 |
| Conread position: | 4-282 |
| Cow position: | chr25:33299073-33299351 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 33, 47 |
| Conread position: | 4-284 |
| Cow position: | chr25:33299409-33299689 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 33, 47 |
| Conread position: | 4-314 |
| Cow position: | chr25:34447028-34447338 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 219, 206 |
| Conread position: | 4-323 |
| Cow position: | chr25:33299493-33299815 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 48, 37 |
| Conread position: | 4-323 |
| Cow position: | chr25:36801633-36801955 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 33, 43 |
| Conread position: | 4-340 |
| Cow position: | chr25:34769866-34769527 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 214 |
| Conread position: | 4-354 |
| Cow position: | chr25:34433530-34433880 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 280, 78 |
| Conread position: | 4-357 |
| Cow position: | chr25:33299157-33299513 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 58, 53 |
| Conread position: | 4-357 |
| Cow position: | chr25:33299241-33299597 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 33, 47 |
| Conread position: | 4-357 |
| Cow position: | chr25:34769614-34769258 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 216 |
| Conread position: | 4-357 |
| Cow position: | chr25:34769782-34769426 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 216 |
| Conread position: | 4-366 |
| Cow position: | chr25:33127808-33128173 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 240 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 290, 0 |
| Conread position: | 4-366 |
| Cow position: | chr25:33299325-33299690 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 216, 207 |
| Conread position: | 4-399 |
| Cow position: | chr25:34447448-34447839 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 49, 30 |
| Conread position: | 7-281 |
| Cow position: | chr25:33305142-33304873 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 78, 25 |
| Conread position: | 7-282 |
| Cow position: | chr25:36801060-36801335 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 54, 36 |
| Conread position: | 7-357 |
| Cow position: | chr25:33144858-33145208 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 273, 178 |
| Conread position: | 7-357 |
| Cow position: | chr25:36801468-36801821 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 53, 32 |
| Conread position: | 8-357 |
| Cow position: | chr25:33157463-33157111 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 230 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 200, 212 |
| Conread position: | 10-357 |
| Cow position: | chr25:34770112-34769762 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 237 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 201, 210 |
| Conread position: | 12-338 |
| Cow position: | chr25:33127732-33128061 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 0 |
| Conread position: | 13-357 |
| Cow position: | chr25:34447205-34447552 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 49, 43 |
| Conread position: | 19-343 |
| Cow position: | chr25:23420320-23420647 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 29, 33 |
| Conread position: | 19-357 |
| Cow position: | chr25:33298920-33299261 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 18, 33 |
| Conread position: | 22-328 |
| Cow position: | chr25:326947-327256 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 40, 36 |
| Conread position: | 36-277 |
| Cow position: | chr25:34433478-34433716 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 20, 12 |
| Conread position: | 49-288 |
| Cow position: | chr25:34432987-34433226 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 50-356 |
| Cow position: | chr25:33157505-33157196 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 243, 0 |
| Conread position: | 50-366 |
| Cow position: | chr25:34446990-34447309 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 93, 88 |
| Conread position: | 50-366 |
| Cow position: | chr25:34770156-34769837 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 220 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 165, 171 |
| Conread position: | 61-338 |
| Cow position: | chr25:36800694-36800974 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 246, 0 |
| Conread position: | 71-366 |
| Cow position: | chr25:33127707-33128005 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 209, 0 |
| Conread position: | 75-259 |
| Cow position: | chr25:34732615-34732431 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 79-357 |
| Cow position: | chr25:33144846-33145124 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 172, 166 |
Show alignments to all cow chromosomes.