Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10083G01.5 |
| Conread position: | 1-357 |
| Cow position: | chr28:7757418-7757778 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 239 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 7, 98 |
| Conread position: | 2-256 |
| Cow position: | chr28:9299309-9299563 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 40, 60 |
| Conread position: | 2-269 |
| Cow position: | chr28:7810679-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 51, 32 |
| Conread position: | 2-274 |
| Cow position: | chr28:11333797-11333525 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 49, 38 |
| Conread position: | 2-281 |
| Cow position: | chr28:7757924-7758203 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 35, 51 |
| Conread position: | 2-281 |
| Cow position: | chr28:9253107-9253386 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 33, 48 |
| Conread position: | 2-281 |
| Cow position: | chr28:9298905-9299182 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 125, 90 |
| Conread position: | 2-282 |
| Cow position: | chr28:9299225-9299505 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 35, 48 |
| Conread position: | 2-293 |
| Cow position: | chr28:9253359-9253651 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 43, 35 |
| Conread position: | 2-326 |
| Cow position: | chr28:9253275-9253602 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 35, 50 |
| Conread position: | 2-336 |
| Cow position: | chr28:33210232-33210569 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 194, 200 |
| Conread position: | 2-338 |
| Cow position: | chr28:11334049-11333710 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 30, 50 |
| Conread position: | 2-357 |
| Cow position: | chr28:7757588-7757946 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 211, 207 |
| Conread position: | 2-357 |
| Cow position: | chr28:7757672-7758030 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 247 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 32, 45 |
| Conread position: | 2-357 |
| Cow position: | chr28:7757756-7758114 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 233 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 43, 29 |
| Conread position: | 2-357 |
| Cow position: | chr28:7757840-7758198 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 35, 45 |
| Conread position: | 2-357 |
| Cow position: | chr28:7810352-7810701 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 286, 183 |
| Conread position: | 2-357 |
| Cow position: | chr28:9252939-9253297 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 285, 0 |
| Conread position: | 2-357 |
| Cow position: | chr28:9253191-9253549 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 45, 38 |
| Conread position: | 2-378 |
| Cow position: | chr28:7758008-7758389 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 137, 142 |
| Conread position: | 4-272 |
| Cow position: | chr28:34695918-34696186 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 71, 52 |
| Conread position: | 4-283 |
| Cow position: | chr28:34696002-34696281 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 51, 42 |
| Conread position: | 4-284 |
| Cow position: | chr28:34673445-34673725 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 36, 57 |
| Conread position: | 4-286 |
| Cow position: | chr28:7810597-7810879 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 226, 207 |
| Conread position: | 4-328 |
| Cow position: | chr28:34696086-34696413 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 41, 35 |
| Conread position: | 4-340 |
| Cow position: | chr28:7758414-7758753 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 41, 22 |
| Conread position: | 4-360 |
| Cow position: | chr28:7758498-7758857 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 35, 49 |
| Conread position: | 5-343 |
| Cow position: | chr28:7758331-7758672 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 124, 110 |
| Conread position: | 6-357 |
| Cow position: | chr28:9299075-9299415 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 43, 31 |
| Conread position: | 7-284 |
| Cow position: | chr28:9290345-9290620 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 214, 30 |
| Conread position: | 11-399 |
| Cow position: | chr28:7757513-7757904 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 34, 23 |
| Conread position: | 13-278 |
| Cow position: | chr28:9290267-9290530 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 19-267 |
| Cow position: | chr28:34673376-34673624 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 21, 30 |
| Conread position: | 19-270 |
| Cow position: | chr28:7810285-7810536 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 43, 21 |
| Conread position: | 19-281 |
| Cow position: | chr28:7810528-7810790 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 209, 187 |
| Conread position: | 50-357 |
| Cow position: | chr28:9253071-9253381 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 214 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 159, 168 |
| Conread position: | 61-343 |
| Cow position: | chr28:9252913-9253199 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 24, 158 |
| Conread position: | 65-357 |
| Cow position: | chr28:34696231-34696526 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 155, 150 |
| Conread position: | 78-357 |
| Cow position: | chr28:9299217-9299499 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 133, 152 |
| Conread position: | 81-357 |
| Cow position: | chr28:33210227-33210506 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 200, 0 |
Show alignments to all cow chromosomes.