Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10083G01.5 |
| Conread position: | 1-242 |
| Cow position: | chr3:16020453-16020219 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 2-254 |
| Cow position: | chr3:62743180-62743432 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-283 |
| Cow position: | chr3:62721985-62721704 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 53, 38 |
| Conread position: | 2-284 |
| Cow position: | chr3:68027432-68027714 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 45, 49 |
| Conread position: | 2-339 |
| Cow position: | chr3:62742699-62743033 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 185, 51 |
| Conread position: | 2-342 |
| Cow position: | chr3:62742283-62742625 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 210, 71 |
| Conread position: | 2-343 |
| Cow position: | chr3:68027264-68027608 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 304, 0 |
| Conread position: | 2-343 |
| Cow position: | chr3:68045689-68046033 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 38, 50 |
| Conread position: | 2-347 |
| Cow position: | chr3:68027096-68027446 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 50 |
| Conread position: | 2-357 |
| Cow position: | chr3:62722069-62721711 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 218 |
| Conread position: | 2-357 |
| Cow position: | chr3:62722153-62721795 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 144 |
| Conread position: | 2-357 |
| Cow position: | chr3:68045606-68045963 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 5 |
| Conread position: | 2-366 |
| Cow position: | chr3:68045941-68046308 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 37, 48 |
| Conread position: | 3-243 |
| Cow position: | chr3:68046110-68046350 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 36, 47 |
| Conread position: | 3-281 |
| Cow position: | chr3:77350907-77350632 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 57, 45 |
| Conread position: | 4-264 |
| Cow position: | chr3:62721815-62721556 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 44, 48 |
| Conread position: | 4-269 |
| Cow position: | chr3:62721899-62721634 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 48, 30 |
| Conread position: | 4-284 |
| Cow position: | chr3:68046027-68046307 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 209, 216 |
| Conread position: | 4-356 |
| Cow position: | chr3:62722319-62721964 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 287, 0 |
| Conread position: | 4-357 |
| Cow position: | chr3:62722235-62721879 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 238 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 136, 140 |
| Conread position: | 4-357 |
| Cow position: | chr3:62742368-62742721 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 291, 270 |
| Conread position: | 4-357 |
| Cow position: | chr3:68045775-68046131 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 44, 50 |
| Conread position: | 5-206 |
| Cow position: | chr3:68027519-68027720 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 34, 45 |
| Conread position: | 11-357 |
| Cow position: | chr3:68027021-68027370 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 38 |
| Conread position: | 19-337 |
| Cow position: | chr3:62743034-62743350 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 259, 82 |
| Conread position: | 50-328 |
| Cow position: | chr3:62743144-62743425 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 156, 168 |
| Conread position: | 57-323 |
| Cow position: | chr3:62742254-62742522 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 89, 70 |
| Conread position: | 71-387 |
| Cow position: | chr3:16020467-16020159 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 217 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 92, 61 |
| Conread position: | 87-366 |
| Cow position: | chr3:62722320-62722038 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 204, 0 |
| Conread position: | 152-357 |
| Cow position: | chr3:68026995-68027202 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 114, 6 |
| Conread position: | 169-396 |
| Cow position: | chr3:68045604-68045834 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 90, 97 |
Show alignments to all cow chromosomes.