Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10083G01.5 |
| Conread position: | 1-357 |
| Cow position: | chr7:8243389-8243748 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 149, 156 |
| Conread position: | 2-203 |
| Cow position: | chr7:1440062-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-205 |
| Cow position: | chr7:11600679-11600476 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-210 |
| Cow position: | chr7:11434483-11434275 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 60, 45 |
| Conread position: | 2-225 |
| Cow position: | chr7:8325913-8326135 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 60, 45 |
| Conread position: | 2-259 |
| Cow position: | chr7:1015195-1015452 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 36, 50 |
| Conread position: | 2-277 |
| Cow position: | chr7:8277600-8277875 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 141, 128 |
| Conread position: | 2-281 |
| Cow position: | chr7:3180541-3180818 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 51 |
| Conread position: | 2-281 |
| Cow position: | chr7:8325325-8325604 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 60, 49 |
| Conread position: | 2-282 |
| Cow position: | chr7:8243810-8244088 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 224, 185 |
| Conread position: | 2-284 |
| Cow position: | chr7:8243055-8243337 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 57, 61 |
| Conread position: | 2-284 |
| Cow position: | chr7:8243642-8243924 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 60, 43 |
| Conread position: | 2-284 |
| Cow position: | chr7:8243726-8244006 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 225, 207 |
| Conread position: | 2-284 |
| Cow position: | chr7:8277936-8278218 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 56, 48 |
| Conread position: | 2-284 |
| Cow position: | chr7:8325829-8326111 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 225, 208 |
| Conread position: | 2-286 |
| Cow position: | chr7:8325409-8325693 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 46, 38 |
| Conread position: | 2-289 |
| Cow position: | chr7:8325493-8325780 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 60, 42 |
| Conread position: | 2-337 |
| Cow position: | chr7:3180457-3180795 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 52, 31 |
| Conread position: | 2-338 |
| Cow position: | chr7:42878684-42878345 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 292, 0 |
| Conread position: | 2-338 |
| Cow position: | chr7:42879104-42878765 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 35, 50 |
| Conread position: | 2-343 |
| Cow position: | chr7:3179785-3180129 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 235 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 210, 218 |
| Conread position: | 2-343 |
| Cow position: | chr7:11600931-11600587 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 213, 217 |
| Conread position: | 2-343 |
| Cow position: | chr7:42879020-42878676 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 277, 0 |
| Conread position: | 2-346 |
| Cow position: | chr7:1014943-1015290 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 213, 218 |
| Conread position: | 2-354 |
| Cow position: | chr7:42878600-42878244 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 234 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 43, 35 |
| Conread position: | 2-357 |
| Cow position: | chr7:1015027-1015385 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 208, 218 |
| Conread position: | 2-357 |
| Cow position: | chr7:1439895-1440252 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 38, 49 |
| Conread position: | 2-357 |
| Cow position: | chr7:3180121-3180479 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 37 |
| Conread position: | 2-357 |
| Cow position: | chr7:8277432-8277790 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 60, 45 |
| Conread position: | 2-357 |
| Cow position: | chr7:8324821-8325179 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 247 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 42, 50 |
| Conread position: | 2-357 |
| Cow position: | chr7:8324905-8325263 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 59, 48 |
| Conread position: | 2-357 |
| Cow position: | chr7:8325577-8325935 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 60, 43 |
| Conread position: | 2-357 |
| Cow position: | chr7:8325661-8326019 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 243 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 60, 45 |
| Conread position: | 2-357 |
| Cow position: | chr7:42879188-42878830 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 246 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 45, 38 |
| Conread position: | 2-358 |
| Cow position: | chr7:8243474-8243833 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 60, 45 |
| Conread position: | 2-366 |
| Cow position: | chr7:8325073-8325440 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 236 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 237, 207 |
| Conread position: | 2-376 |
| Cow position: | chr7:8278104-8278479 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 238 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 60, 49 |
| Conread position: | 2-387 |
| Cow position: | chr7:3180289-3180677 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 227 |
| Conread position: | 2-387 |
| Cow position: | chr7:42878768-42878380 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 240 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 310, 0 |
| Conread position: | 2-396 |
| Cow position: | chr7:11601099-11600702 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 289, 360 |
| Conread position: | 2-398 |
| Cow position: | chr7:8243307-8243705 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 258 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 61, 45 |
| Conread position: | 2-398 |
| Cow position: | chr7:18390166-18390565 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 211, 205 |
| Conread position: | 3-269 |
| Cow position: | chr7:11434811-11434545 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 47, 59 |
| Conread position: | 3-281 |
| Cow position: | chr7:1015112-1015390 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 45, 49 |
| Conread position: | 3-284 |
| Cow position: | chr7:8325242-8325523 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 140, 122 |
| Conread position: | 3-284 |
| Cow position: | chr7:18390251-18390532 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-343 |
| Cow position: | chr7:8325746-8326089 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 58, 41 |
| Conread position: | 3-357 |
| Cow position: | chr7:8243140-8243496 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 59, 48 |
| Conread position: | 3-357 |
| Cow position: | chr7:8243559-8243916 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 231 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 59, 49 |
| Conread position: | 3-357 |
| Cow position: | chr7:8277853-8278210 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 58, 41 |
| Conread position: | 3-396 |
| Cow position: | chr7:3179954-3180350 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 49 |
| Conread position: | 3-399 |
| Cow position: | chr7:18389999-18390398 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 135, 127 |
| Conread position: | 4-205 |
| Cow position: | chr7:8277266-8277467 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 141, 122 |
| Conread position: | 4-281 |
| Cow position: | chr7:11600761-11600484 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 211, 216 |
| Conread position: | 4-284 |
| Cow position: | chr7:18390504-18390784 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 44, 55 |
| Conread position: | 4-286 |
| Cow position: | chr7:1014861-1015143 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 49, 30 |
| Conread position: | 4-339 |
| Cow position: | chr7:18390420-18390759 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 207, 216 |
| Conread position: | 4-343 |
| Cow position: | chr7:8278022-8278364 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 228 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 58, 46 |
| Conread position: | 4-357 |
| Cow position: | chr7:1014777-1015133 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 238 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 35, 48 |
| Conread position: | 4-357 |
| Cow position: | chr7:8277770-8278126 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 232 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 141, 124 |
| Conread position: | 4-357 |
| Cow position: | chr7:18390336-18390692 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 44, 48 |
| Conread position: | 4-357 |
| Cow position: | chr7:42878850-42878494 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 43, 36 |
| Conread position: | 4-364 |
| Cow position: | chr7:3179871-3180234 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 38 |
| Conread position: | 4-372 |
| Cow position: | chr7:8324739-8325111 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 54, 47 |
| Conread position: | 5-280 |
| Cow position: | chr7:8277519-8277794 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 56, 39 |
| Conread position: | 5-294 |
| Cow position: | chr7:1438424-1438713 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 24, 39 |
| Conread position: | 6-281 |
| Cow position: | chr7:8277352-8277627 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 36, 56 |
| Conread position: | 6-347 |
| Cow position: | chr7:1014365-1014705 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 202, 224 |
| Conread position: | 7-281 |
| Cow position: | chr7:8242976-8243250 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 133, 146 |
| Conread position: | 8-269 |
| Cow position: | chr7:11601177-11600916 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 204, 212 |
| Conread position: | 8-281 |
| Cow position: | chr7:1014283-1014556 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 31, 44 |
| Conread position: | 8-343 |
| Cow position: | chr7:11600841-11600503 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 224 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 34, 44 |
| Conread position: | 13-357 |
| Cow position: | chr7:1014702-1015049 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 35, 39 |
| Conread position: | 21-366 |
| Cow position: | chr7:42879253-42878905 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 26, 18 |
| Conread position: | 50-281 |
| Cow position: | chr7:1014655-1014886 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 161, 170 |
| Conread position: | 51-357 |
| Cow position: | chr7:3179750-3180059 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 179, 158 |
| Conread position: | 56-343 |
| Cow position: | chr7:11601213-11600923 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 20, 40 |
| Conread position: | 61-284 |
| Cow position: | chr7:11434508-11434285 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 161, 151 |
| Conread position: | 61-294 |
| Cow position: | chr7:1440037-1440270 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 172, 140 |
| Conread position: | 78-284 |
| Cow position: | chr7:8277256-8277462 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 62, 50 |
| Conread position: | 83-357 |
| Cow position: | chr7:1014276-1014551 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 127, 11 |
| Conread position: | 87-372 |
| Cow position: | chr7:8324738-8325027 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 59, 42 |
| Conread position: | 90-357 |
| Cow position: | chr7:3179705-3179975 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 125, 130 |
| Conread position: | 96-366 |
| Cow position: | chr7:42879262-42878989 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 198, 0 |
Show alignments to all cow chromosomes.