Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10106F11.5 |
| Conread position: | 1-146 |
| Cow position: | chr11:82551378-82551521 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 65, 30 |
| Conread position: | 1-156 |
| Cow position: | chr11:62730993-62730833 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 68, 42 |
| Conread position: | 1-158 |
| Cow position: | chr11:55709562-55709402 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 55, 117 |
| Conread position: | 1-158 |
| Cow position: | chr11:62478376-62478540 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-168 |
| Cow position: | chr11:15510698-15510529 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 1-171 |
| Cow position: | chr11:26288071-26288240 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 63, 87 |
| Conread position: | 1-171 |
| Cow position: | chr11:55794286-55794458 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 1-171 |
| Cow position: | chr11:73360280-73360108 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 143 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 1-172 |
| Cow position: | chr11:33204667-33204836 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 1-173 |
| Cow position: | chr11:32362641-32362815 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 2-145 |
| Cow position: | chr11:81578671-81578815 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 2-156 |
| Cow position: | chr11:48098147-48097993 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 62, 22 |
| Conread position: | 2-171 |
| Cow position: | chr11:6271144-6270973 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 2-178 |
| Cow position: | chr11:44243649-44243472 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 10, 92 |
| Conread position: | 2-182 |
| Cow position: | chr11:26278085-26277904 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 27, 89 |
| Conread position: | 3-156 |
| Cow position: | chr11:3754837-3754997 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 54, 61 |
| Conread position: | 3-172 |
| Cow position: | chr11:29575786-29575616 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 67, 33 |
| Conread position: | 3-172 |
| Cow position: | chr11:52155827-52155656 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 3-173 |
| Cow position: | chr11:10281785-10281615 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 99, 113 |
| Conread position: | 3-179 |
| Cow position: | chr11:58556496-58556316 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 3-187 |
| Cow position: | chr11:37632416-37632230 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 63, 173 |
| Conread position: | 4-124 |
| Cow position: | chr11:40481148-40481029 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 60, 32 |
| Conread position: | 4-128 |
| Cow position: | chr11:8478298-8478172 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 4-143 |
| Cow position: | chr11:40453439-40453296 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 4-149 |
| Cow position: | chr11:12310924-12310781 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 62, 18 |
| Conread position: | 4-156 |
| Cow position: | chr11:35467030-35467180 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 62, 18 |
| Conread position: | 4-174 |
| Cow position: | chr11:72854224-72854394 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-176 |
| Cow position: | chr11:4331319-4331489 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 4-176 |
| Cow position: | chr11:57130279-57130106 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 4-180 |
| Cow position: | chr11:22517446-22517623 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 62, 33 |
| Conread position: | 5-158 |
| Cow position: | chr11:35018645-35018800 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 5-173 |
| Cow position: | chr11:35277807-35277976 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 61, 139 |
| Conread position: | 5-175 |
| Cow position: | chr11:60676875-60677044 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 5-175 |
| Cow position: | chr11:75270144-75269967 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 5-176 |
| Cow position: | chr11:64459723-64459552 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 23, 33 |
| Conread position: | 6-156 |
| Cow position: | chr11:60967562-60967415 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 60, 42 |
| Conread position: | 6-166 |
| Cow position: | chr11:56671743-56671583 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 68, 87 |
| Conread position: | 6-172 |
| Cow position: | chr11:20587004-20586840 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 60, 53 |
| Conread position: | 6-188 |
| Cow position: | chr11:41233116-41233300 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 58, 88 |
| Conread position: | 7-133 |
| Cow position: | chr11:41400558-41400432 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 57, 88 |
| Conread position: | 7-143 |
| Cow position: | chr11:1886394-1886529 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 61, 27 |
| Conread position: | 7-158 |
| Cow position: | chr11:79929285-79929133 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 43, 87 |
| Conread position: | 7-165 |
| Cow position: | chr11:5233254-5233412 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 41, 55 |
| Conread position: | 7-171 |
| Cow position: | chr11:80925468-80925301 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 57, 114 |
| Conread position: | 14-170 |
| Cow position: | chr11:34934526-34934368 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 15-174 |
| Cow position: | chr11:26515632-26515476 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 49, 33 |
| Conread position: | 18-180 |
| Cow position: | chr11:53586425-53586262 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 46, 80 |
| Conread position: | 27-174 |
| Cow position: | chr11:10990520-10990669 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 10, 95 |
| Conread position: | 28-172 |
| Cow position: | chr11:6707888-6708033 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 29-171 |
| Cow position: | chr11:50017115-50016971 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 30-171 |
| Cow position: | chr11:30369000-30369143 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 33-168 |
| Cow position: | chr11:22093964-22094096 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 39-178 |
| Cow position: | chr11:50563229-50563363 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 45-156 |
| Cow position: | chr11:19903290-19903177 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 63-172 |
| Cow position: | chr11:20365125-20365016 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 86, 25 |
| Conread position: | 68-175 |
| Cow position: | chr11:56357886-56357995 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 91 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
Show alignments to all cow chromosomes.