Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10106F11.5 |
| Conread position: | 1-136 |
| Cow position: | chr2:5075428-5075557 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1-139 |
| Cow position: | chr2:2876592-2876731 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 63, 92 |
| Conread position: | 1-158 |
| Cow position: | chr2:20376964-20376801 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 51, 33 |
| Conread position: | 1-171 |
| Cow position: | chr2:1148646-1148812 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 63, 82 |
| Conread position: | 1-171 |
| Cow position: | chr2:6322789-6322961 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 1-171 |
| Cow position: | chr2:79449076-79449243 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 65, 20 |
| Conread position: | 1-181 |
| Cow position: | chr2:45433878-45433699 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 95, 16 |
| Conread position: | 2-144 |
| Cow position: | chr2:55040483-55040628 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 2-145 |
| Cow position: | chr2:19833596-19833741 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 10, 33 |
| Conread position: | 2-145 |
| Cow position: | chr2:34870999-34871139 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 59, 13 |
| Conread position: | 2-145 |
| Cow position: | chr2:85250844-85250986 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 86, 15 |
| Conread position: | 2-170 |
| Cow position: | chr2:14921215-14921056 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 2-171 |
| Cow position: | chr2:16483484-16483659 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 83 |
| Conread position: | 2-173 |
| Cow position: | chr2:58682723-58682550 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 62, 118 |
| Conread position: | 2-183 |
| Cow position: | chr2:71595275-71595455 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 62, 115 |
| Conread position: | 3-110 |
| Cow position: | chr2:78105722-78105614 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 3-147 |
| Cow position: | chr2:9180748-9180598 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 3-168 |
| Cow position: | chr2:26421557-26421396 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 3-168 |
| Cow position: | chr2:71622446-71622280 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 25, 116 |
| Conread position: | 3-168 |
| Cow position: | chr2:71961341-71961507 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 66, 56 |
| Conread position: | 3-172 |
| Cow position: | chr2:69872395-69872563 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 61, 30 |
| Conread position: | 3-174 |
| Cow position: | chr2:32977770-32977940 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 64, 97 |
| Conread position: | 4-110 |
| Cow position: | chr2:63193481-63193589 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 4-156 |
| Cow position: | chr2:49147949-49147796 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 62, 53 |
| Conread position: | 4-158 |
| Cow position: | chr2:53702815-53702969 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 60, 72 |
| Conread position: | 4-169 |
| Cow position: | chr2:33012592-33012754 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 60, 124 |
| Conread position: | 4-171 |
| Cow position: | chr2:6352083-6352249 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 60, 31 |
| Conread position: | 4-171 |
| Cow position: | chr2:16273712-16273543 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 4-171 |
| Cow position: | chr2:21599675-21599843 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 4-171 |
| Cow position: | chr2:43487788-43487951 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 62, 35 |
| Conread position: | 4-171 |
| Cow position: | chr2:51552398-51552567 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 62, 19 |
| Conread position: | 4-180 |
| Cow position: | chr2:39519344-39519166 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 4-181 |
| Cow position: | chr2:34582232-34582410 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 60, 81 |
| Conread position: | 4-181 |
| Cow position: | chr2:69431316-69431136 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 5-142 |
| Cow position: | chr2:37957839-37957703 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 7, 15 |
| Conread position: | 5-152 |
| Cow position: | chr2:8997674-8997822 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 58, 121 |
| Conread position: | 5-152 |
| Cow position: | chr2:9300755-9300607 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 58, 121 |
| Conread position: | 5-152 |
| Cow position: | chr2:10108586-10108441 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 59, 85 |
| Conread position: | 5-152 |
| Cow position: | chr2:45532458-45532609 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 5-156 |
| Cow position: | chr2:17169801-17169659 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 5-168 |
| Cow position: | chr2:16037718-16037554 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 44, 19 |
| Conread position: | 5-171 |
| Cow position: | chr2:5861538-5861371 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 61, 27 |
| Conread position: | 5-171 |
| Cow position: | chr2:69397379-69397217 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 58, 86 |
| Conread position: | 5-171 |
| Cow position: | chr2:69400368-69400530 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 58, 86 |
| Conread position: | 5-172 |
| Cow position: | chr2:19793210-19793045 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 61, 22 |
| Conread position: | 5-173 |
| Cow position: | chr2:16138028-16137861 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 44, 53 |
| Conread position: | 5-174 |
| Cow position: | chr2:6588695-6588859 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 63, 12 |
| Conread position: | 5-174 |
| Cow position: | chr2:62138974-62139145 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 5-207 |
| Cow position: | chr2:12537551-12537753 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 186, 94 |
| Conread position: | 6-152 |
| Cow position: | chr2:74083520-74083373 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 60, 79 |
| Conread position: | 6-173 |
| Cow position: | chr2:36881504-36881670 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 62, 27 |
| Conread position: | 6-173 |
| Cow position: | chr2:63775959-63775790 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 6-174 |
| Cow position: | chr2:36095417-36095248 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 57, 84 |
| Conread position: | 6-175 |
| Cow position: | chr2:7428994-7428821 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 7-181 |
| Cow position: | chr2:64104299-64104122 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 8-174 |
| Cow position: | chr2:48630277-48630444 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 55, 90 |
| Conread position: | 11-174 |
| Cow position: | chr2:83939956-83940121 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 50, 132 |
| Conread position: | 14-156 |
| Cow position: | chr2:40475402-40475546 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 15-156 |
| Cow position: | chr2:877691-877833 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 63-175 |
| Cow position: | chr2:74085891-74086004 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 90 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 105, 0 |
Show alignments to all cow chromosomes.