Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10106F11.5 |
| Conread position: | 1-134 |
| Cow position: | chr21:33974022-33974158 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 1-139 |
| Cow position: | chr21:21042450-21042310 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 1-143 |
| Cow position: | chr21:448391-448249 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 70, 48 |
| Conread position: | 1-144 |
| Cow position: | chr21:37312829-37312974 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 1-152 |
| Cow position: | chr21:11299929-11299777 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 65, 16 |
| Conread position: | 1-156 |
| Cow position: | chr21:13501857-13502012 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 64, 92 |
| Conread position: | 1-156 |
| Cow position: | chr21:30616277-30616121 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 71, 98 |
| Conread position: | 1-158 |
| Cow position: | chr21:47730702-47730856 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 63, 100 |
| Conread position: | 1-168 |
| Cow position: | chr21:13455537-13455700 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 63, 82 |
| Conread position: | 1-168 |
| Cow position: | chr21:42906464-42906302 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 71, 34 |
| Conread position: | 1-171 |
| Cow position: | chr21:41539846-41539674 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 144 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 65, 89 |
| Conread position: | 1-173 |
| Cow position: | chr21:17382467-17382293 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 1-174 |
| Cow position: | chr21:12453021-12453196 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 65, 26 |
| Conread position: | 1-175 |
| Cow position: | chr21:16801522-16801698 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 1-176 |
| Cow position: | chr21:26869492-26869313 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 63, 41 |
| Conread position: | 1-194 |
| Cow position: | chr21:30171009-30170819 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 64, 152 |
| Conread position: | 2-135 |
| Cow position: | chr21:36952930-36953063 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 64, 32 |
| Conread position: | 2-155 |
| Cow position: | chr21:9446921-9447073 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 64, 32 |
| Conread position: | 2-173 |
| Cow position: | chr21:45448453-45448622 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 91, 20 |
| Conread position: | 2-185 |
| Cow position: | chr21:45299247-45299432 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 62, 31 |
| Conread position: | 3-158 |
| Cow position: | chr21:20385188-20385341 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 3-171 |
| Cow position: | chr21:13225666-13225495 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 3-180 |
| Cow position: | chr21:49647141-49646962 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 149 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 4-142 |
| Cow position: | chr21:27199732-27199872 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 4-168 |
| Cow position: | chr21:4261931-4262095 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 61, 31 |
| Conread position: | 4-171 |
| Cow position: | chr21:16337073-16337243 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 4-174 |
| Cow position: | chr21:37197336-37197505 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 67, 32 |
| Conread position: | 4-185 |
| Cow position: | chr21:18082436-18082618 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 62, 171 |
| Conread position: | 5-140 |
| Cow position: | chr21:1721205-1721336 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 63, 39 |
| Conread position: | 5-171 |
| Cow position: | chr21:38696095-38696261 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 59, 16 |
| Conread position: | 5-173 |
| Cow position: | chr21:28148101-28147931 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 6-140 |
| Cow position: | chr21:33197029-33197163 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-158 |
| Cow position: | chr21:28626485-28626632 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 6-168 |
| Cow position: | chr21:38926894-38927060 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 6-172 |
| Cow position: | chr21:27769760-27769596 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 60, 38 |
| Conread position: | 11-168 |
| Cow position: | chr21:3846904-3847065 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 17-164 |
| Cow position: | chr21:37367652-37367801 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 27-174 |
| Cow position: | chr21:28158082-28157940 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 33-178 |
| Cow position: | chr21:17223814-17223961 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 33, 57 |
| Conread position: | 35-171 |
| Cow position: | chr21:30218654-30218517 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 30, 78 |
| Conread position: | 42-171 |
| Cow position: | chr21:45451628-45451755 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 65-172 |
| Cow position: | chr21:3384248-3384141 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 86 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.