Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10106F11.5 |
| Conread position: | 1-109 |
| Cow position: | chr3:76960821-76960711 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 89 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 1-138 |
| Cow position: | chr3:64079641-64079502 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 43, 53 |
| Conread position: | 1-152 |
| Cow position: | chr3:47471208-47471054 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 1-156 |
| Cow position: | chr3:60284190-60284033 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 1-158 |
| Cow position: | chr3:4485690-4485534 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 63, 105 |
| Conread position: | 1-168 |
| Cow position: | chr3:84020174-84020342 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 69, 139 |
| Conread position: | 1-175 |
| Cow position: | chr3:45600941-45601113 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 67, 51 |
| Conread position: | 1-185 |
| Cow position: | chr3:77776415-77776229 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 39, 92 |
| Conread position: | 1-187 |
| Cow position: | chr3:59577500-59577314 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 63, 146 |
| Conread position: | 2-118 |
| Cow position: | chr3:44895736-44895619 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 62, 88 |
| Conread position: | 2-158 |
| Cow position: | chr3:26382268-26382114 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 64, 13 |
| Conread position: | 2-165 |
| Cow position: | chr3:59814079-59814248 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 2-168 |
| Cow position: | chr3:44946170-44946001 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 2-171 |
| Cow position: | chr3:50289890-50289719 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 2-171 |
| Cow position: | chr3:56139452-56139623 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 2-171 |
| Cow position: | chr3:58637214-58637375 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 2-172 |
| Cow position: | chr3:9674493-9674667 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 3-144 |
| Cow position: | chr3:50594059-50594202 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 66, 87 |
| Conread position: | 3-152 |
| Cow position: | chr3:32764438-32764292 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 3-184 |
| Cow position: | chr3:41734969-41735148 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 4-155 |
| Cow position: | chr3:55474076-55473928 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 62, 11 |
| Conread position: | 4-168 |
| Cow position: | chr3:33614552-33614715 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 60, 90 |
| Conread position: | 4-171 |
| Cow position: | chr3:15566530-15566699 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 4-171 |
| Cow position: | chr3:73054802-73054633 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 28, 55 |
| Conread position: | 4-171 |
| Cow position: | chr3:73154952-73155120 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 4-172 |
| Cow position: | chr3:75618955-75618787 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 61, 89 |
| Conread position: | 4-174 |
| Cow position: | chr3:72592812-72592646 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 62, 44 |
| Conread position: | 4-179 |
| Cow position: | chr3:74227758-74227942 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 5-128 |
| Cow position: | chr3:53245876-53245751 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 5-135 |
| Cow position: | chr3:53132517-53132646 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 61, 28 |
| Conread position: | 5-158 |
| Cow position: | chr3:9631472-9631317 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 5-158 |
| Cow position: | chr3:80294280-80294129 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 64, 40 |
| Conread position: | 5-171 |
| Cow position: | chr3:1416818-1416980 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 5-171 |
| Cow position: | chr3:52156365-52156533 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 10, 15 |
| Conread position: | 5-172 |
| Cow position: | chr3:947103-947268 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 5-172 |
| Cow position: | chr3:28560930-28561098 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 64, 87 |
| Conread position: | 5-188 |
| Cow position: | chr3:39976965-39976782 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 169, 39 |
| Conread position: | 6-145 |
| Cow position: | chr3:32349210-32349347 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 135, 55 |
| Conread position: | 6-168 |
| Cow position: | chr3:65385444-65385284 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 6-182 |
| Cow position: | chr3:54882911-54882732 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 60, 94 |
| Conread position: | 7-152 |
| Cow position: | chr3:8529027-8528879 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 7-171 |
| Cow position: | chr3:38333456-38333290 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 11-139 |
| Cow position: | chr3:83233510-83233384 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 11-174 |
| Cow position: | chr3:5418033-5418194 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 88, 64 |
| Conread position: | 11-175 |
| Cow position: | chr3:9431283-9431448 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 59, 73 |
| Conread position: | 14-158 |
| Cow position: | chr3:19103644-19103791 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 14-169 |
| Cow position: | chr3:58854011-58854165 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 14-175 |
| Cow position: | chr3:26648043-26648204 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-156 |
| Cow position: | chr3:22209115-22209260 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 15-156 |
| Cow position: | chr3:37499350-37499491 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 52, 91 |
| Conread position: | 15-172 |
| Cow position: | chr3:22276403-22276244 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 12, 76 |
| Conread position: | 17-171 |
| Cow position: | chr3:45635100-45635256 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 18-156 |
| Cow position: | chr3:77660311-77660171 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 24-193 |
| Cow position: | chr3:37835925-37836096 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 27-156 |
| Cow position: | chr3:72915271-72915139 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 38, 119 |
| Conread position: | 30-174 |
| Cow position: | chr3:54364703-54364556 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 31-157 |
| Cow position: | chr3:84184165-84184291 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 30, 48 |
| Conread position: | 31-171 |
| Cow position: | chr3:3794221-3794079 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 34-179 |
| Cow position: | chr3:34591501-34591648 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 32, 108 |
| Conread position: | 41-170 |
| Cow position: | chr3:71500210-71500079 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 8, 51 |
| Conread position: | 41-174 |
| Cow position: | chr3:42030224-42030359 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 25, 10 |
| Conread position: | 49-171 |
| Cow position: | chr3:35278029-35277906 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 21, 41 |
| Conread position: | 63-183 |
| Cow position: | chr3:26582624-26582745 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 20, 0 |
Show alignments to all cow chromosomes.