Cow genome map

Conread name: Ss1.1-Ova1-OVRM10106F11.5

Conread position: 1-109
Cow position: chr3:76960821-76960711 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 63, 0

Conread position: 1-138
Cow position: chr3:64079641-64079502 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 43, 53

Conread position: 1-152
Cow position: chr3:47471208-47471054 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 122
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 63, 0

Conread position: 1-156
Cow position: chr3:60284190-60284033 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 124
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 63, 0

Conread position: 1-158
Cow position: chr3:4485690-4485534 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 124
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 63, 105

Conread position: 1-168
Cow position: chr3:84020174-84020342 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 130
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 69, 139

Conread position: 1-175
Cow position: chr3:45600941-45601113 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 67, 51

Conread position: 1-185
Cow position: chr3:77776415-77776229 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 136
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 39, 92

Conread position: 1-187
Cow position: chr3:59577500-59577314 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 139
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 63, 146

Conread position: 2-118
Cow position: chr3:44895736-44895619 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 99
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 62, 88

Conread position: 2-158
Cow position: chr3:26382268-26382114 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 64, 13

Conread position: 2-165
Cow position: chr3:59814079-59814248 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 122
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 67, 0

Conread position: 2-168
Cow position: chr3:44946170-44946001 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 62, 0

Conread position: 2-171
Cow position: chr3:50289890-50289719 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 122
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 64, 0

Conread position: 2-171
Cow position: chr3:56139452-56139623 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 123
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 61, 0

Conread position: 2-171
Cow position: chr3:58637214-58637375 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 2-172
Cow position: chr3:9674493-9674667 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 130
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 10, 0

Conread position: 3-144
Cow position: chr3:50594059-50594202 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 66, 87

Conread position: 3-152
Cow position: chr3:32764438-32764292 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 14, 0

Conread position: 3-184
Cow position: chr3:41734969-41735148 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 63, 16

Conread position: 4-155
Cow position: chr3:55474076-55473928 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 120
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 62, 11

Conread position: 4-168
Cow position: chr3:33614552-33614715 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 129
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 60, 90

Conread position: 4-171
Cow position: chr3:15566530-15566699 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 131
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 62, 0

Conread position: 4-171
Cow position: chr3:73054802-73054633 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 28, 55

Conread position: 4-171
Cow position: chr3:73154952-73155120 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 66, 0

Conread position: 4-172
Cow position: chr3:75618955-75618787 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 61, 89

Conread position: 4-174
Cow position: chr3:72592812-72592646 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 62, 44

Conread position: 4-179
Cow position: chr3:74227758-74227942 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 139
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 60, 0

Conread position: 5-128
Cow position: chr3:53245876-53245751 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 62, 0

Conread position: 5-135
Cow position: chr3:53132517-53132646 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 61, 28

Conread position: 5-158
Cow position: chr3:9631472-9631317 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 61, 0

Conread position: 5-158
Cow position: chr3:80294280-80294129 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 64, 40

Conread position: 5-171
Cow position: chr3:1416818-1416980 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 120
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 5-171
Cow position: chr3:52156365-52156533 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 122
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 10, 15

Conread position: 5-172
Cow position: chr3:947103-947268 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 31, 0

Conread position: 5-172
Cow position: chr3:28560930-28561098 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 64, 87

Conread position: 5-188
Cow position: chr3:39976965-39976782 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 136
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 169, 39

Conread position: 6-145
Cow position: chr3:32349210-32349347 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 114
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 135, 55

Conread position: 6-168
Cow position: chr3:65385444-65385284 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 90, 0

Conread position: 6-182
Cow position: chr3:54882911-54882732 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 137
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 60, 94

Conread position: 7-152
Cow position: chr3:8529027-8528879 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 119
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 5, 0

Conread position: 7-171
Cow position: chr3:38333456-38333290 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 57, 0

Conread position: 11-139
Cow position: chr3:83233510-83233384 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 107
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 53, 0

Conread position: 11-174
Cow position: chr3:5418033-5418194 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 88, 64

Conread position: 11-175
Cow position: chr3:9431283-9431448 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 131
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 59, 73

Conread position: 14-158
Cow position: chr3:19103644-19103791 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 52, 0

Conread position: 14-169
Cow position: chr3:58854011-58854165 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 24, 0

Conread position: 14-175
Cow position: chr3:26648043-26648204 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 15-156
Cow position: chr3:22209115-22209260 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 50, 0

Conread position: 15-156
Cow position: chr3:37499350-37499491 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 52, 91

Conread position: 15-172
Cow position: chr3:22276403-22276244 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 12, 76

Conread position: 17-171
Cow position: chr3:45635100-45635256 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 125
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 52, 0

Conread position: 18-156
Cow position: chr3:77660311-77660171 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 56, 0

Conread position: 24-193
Cow position: chr3:37835925-37836096 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 42, 0

Conread position: 27-156
Cow position: chr3:72915271-72915139 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 38, 119

Conread position: 30-174
Cow position: chr3:54364703-54364556 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 36, 0

Conread position: 31-157
Cow position: chr3:84184165-84184291 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 98
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 30, 48

Conread position: 31-171
Cow position: chr3:3794221-3794079 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 34-179
Cow position: chr3:34591501-34591648 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 32, 108

Conread position: 41-170
Cow position: chr3:71500210-71500079 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 8, 51

Conread position: 41-174
Cow position: chr3:42030224-42030359 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 25, 10

Conread position: 49-171
Cow position: chr3:35278029-35277906 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 21, 41

Conread position: 63-183
Cow position: chr3:26582624-26582745 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 20, 0

Show alignments to all cow chromosomes.