Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10106F11.5 |
| Conread position: | 1-108 |
| Cow position: | chr5:20910675-20910567 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 62, 92 |
| Conread position: | 1-133 |
| Cow position: | chr5:36808387-36808255 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 63, 89 |
| Conread position: | 1-152 |
| Cow position: | chr5:21782895-21782742 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 1-156 |
| Cow position: | chr5:66878847-66878694 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 63, 89 |
| Conread position: | 1-157 |
| Cow position: | chr5:3103113-3102956 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 65, 36 |
| Conread position: | 1-168 |
| Cow position: | chr5:48398734-48398901 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 65, 35 |
| Conread position: | 1-171 |
| Cow position: | chr5:8240284-8240454 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 63, 40 |
| Conread position: | 1-172 |
| Cow position: | chr5:10045135-10045302 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 1-172 |
| Cow position: | chr5:34903921-34904091 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 65, 91 |
| Conread position: | 1-174 |
| Cow position: | chr5:59245379-59245554 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 1-177 |
| Cow position: | chr5:45945945-45946108 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 172, 57 |
| Conread position: | 1-193 |
| Cow position: | chr5:28813699-28813506 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 65, 178 |
| Conread position: | 1-412 |
| Cow position: | chr5:65093092-65093507 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 143 |
| Conread position: | 2-170 |
| Cow position: | chr5:32134094-32134262 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 61, 12 |
| Conread position: | 2-172 |
| Cow position: | chr5:5227585-5227415 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 11, 27 |
| Conread position: | 2-173 |
| Cow position: | chr5:24609332-24609160 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 63, 130 |
| Conread position: | 2-173 |
| Cow position: | chr5:25730233-25730059 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 2-174 |
| Cow position: | chr5:29739610-29739786 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 52, 95 |
| Conread position: | 3-158 |
| Cow position: | chr5:12177695-12177538 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 9, 136 |
| Conread position: | 3-158 |
| Cow position: | chr5:75147954-75148113 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 32, 111 |
| Conread position: | 3-172 |
| Cow position: | chr5:30348709-30348541 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 62, 39 |
| Conread position: | 3-174 |
| Cow position: | chr5:5727796-5727969 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 3-178 |
| Cow position: | chr5:29513540-29513715 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 61, 43 |
| Conread position: | 3-179 |
| Cow position: | chr5:54692934-54693111 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 68, 87 |
| Conread position: | 3-185 |
| Cow position: | chr5:49138267-49138448 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 61, 101 |
| Conread position: | 4-152 |
| Cow position: | chr5:35448670-35448820 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 4-155 |
| Cow position: | chr5:14303741-14303588 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 4-156 |
| Cow position: | chr5:51729241-51729392 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 60, 89 |
| Conread position: | 4-171 |
| Cow position: | chr5:67647444-67647612 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 62, 122 |
| Conread position: | 4-181 |
| Cow position: | chr5:65750548-65750720 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 4-201 |
| Cow position: | chr5:35612480-35612283 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 62, 11 |
| Conread position: | 5-139 |
| Cow position: | chr5:47761225-47761361 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 5-152 |
| Cow position: | chr5:38398181-38398030 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 5-171 |
| Cow position: | chr5:2716393-2716227 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 60, 77 |
| Conread position: | 5-171 |
| Cow position: | chr5:42469587-42469423 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 60, 41 |
| Conread position: | 5-171 |
| Cow position: | chr5:53629806-53629973 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 59, 116 |
| Conread position: | 5-172 |
| Cow position: | chr5:20957162-20956996 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 57, 88 |
| Conread position: | 5-172 |
| Cow position: | chr5:31524357-31524522 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 60, 83 |
| Conread position: | 5-173 |
| Cow position: | chr5:71595235-71595066 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 64, 36 |
| Conread position: | 5-175 |
| Cow position: | chr5:30622198-30622371 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 10, 86 |
| Conread position: | 6-156 |
| Cow position: | chr5:54393076-54392926 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 62, 83 |
| Conread position: | 6-183 |
| Cow position: | chr5:54892134-54892303 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 17-139 |
| Cow position: | chr5:9220262-9220138 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 18-172 |
| Cow position: | chr5:28410305-28410147 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 22-158 |
| Cow position: | chr5:21949860-21949722 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 30-152 |
| Cow position: | chr5:58371073-58371197 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 32-172 |
| Cow position: | chr5:27474816-27474674 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 445-568 |
| Cow position: | chr5:65093518-65093638 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
Show alignments to all cow chromosomes.