Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10106F11.5 |
| Conread position: | 1-117 |
| Cow position: | chrX:2874416-2874534 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 1-155 |
| Cow position: | chrX:40472945-40472784 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-156 |
| Cow position: | chrX:13035843-13036000 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 1-168 |
| Cow position: | chrX:11791526-11791362 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 60, 98 |
| Conread position: | 1-171 |
| Cow position: | chrX:1177015-1177188 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-171 |
| Cow position: | chrX:6857360-6857532 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 1-174 |
| Cow position: | chrX:25306132-25305960 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 65, 17 |
| Conread position: | 1-177 |
| Cow position: | chrX:6011810-6011985 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 64, 93 |
| Conread position: | 1-181 |
| Cow position: | chrX:4265145-4265327 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 75, 131 |
| Conread position: | 1-190 |
| Cow position: | chrX:21621737-21621549 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 34, 54 |
| Conread position: | 2-156 |
| Cow position: | chrX:11691949-11692105 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 2-156 |
| Cow position: | chrX:44641808-44641965 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 3-170 |
| Cow position: | chrX:2400506-2400674 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 63, 100 |
| Conread position: | 3-171 |
| Cow position: | chrX:21835467-21835626 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 138, 60 |
| Conread position: | 3-174 |
| Cow position: | chrX:42265699-42265537 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 3-193 |
| Cow position: | chrX:43080866-43080675 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 61, 9 |
| Conread position: | 4-165 |
| Cow position: | chrX:16953882-16953720 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 62, 28 |
| Conread position: | 4-172 |
| Cow position: | chrX:36067195-36067021 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 5-149 |
| Cow position: | chrX:16885619-16885769 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 5-170 |
| Cow position: | chrX:22314554-22314722 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 5-171 |
| Cow position: | chrX:37407469-37407306 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 62, 31 |
| Conread position: | 5-171 |
| Cow position: | chrX:39353335-39353167 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 6-171 |
| Cow position: | chrX:22891125-22890962 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 6, 85 |
| Conread position: | 7-156 |
| Cow position: | chrX:37148593-37148742 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 56, 85 |
| Conread position: | 11-116 |
| Cow position: | chrX:36837363-36837470 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 88 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 11-180 |
| Cow position: | chrX:40552777-40552940 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 53, 80 |
| Conread position: | 15-170 |
| Cow position: | chrX:2766979-2767135 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 46, 137 |
| Conread position: | 35-175 |
| Cow position: | chrX:20875091-20874950 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 31, 98 |
| Conread position: | 36-168 |
| Cow position: | chrX:15386621-15386487 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 30, 0 |
Show alignments to all cow chromosomes.