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Cow genome map

           
Conread name:
           
Ss1.1-Ova1-OVRM10117D04.5
        

               
Conread position:
               
3-279
               

               
Cow position:
               
chr1:89742158-89741877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
130, 29
               

               
Conread position:
               
3-279
               

               
Cow position:
               
chr1:97696578-97696862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
69, 26
               

               
Conread position:
               
4-219
               

               
Cow position:
               
chr1:93228364-93228583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
36, 25
               

               
Conread position:
               
4-279
               

               
Cow position:
               
chr1:53308550-53308276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 22
               

               
Conread position:
               
5-244
               

               
Cow position:
               
chr1:70026504-70026262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
102, 24
               

               
Conread position:
               
7-232
               

               
Cow position:
               
chr1:63596216-63595983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
20, 46
               

               
Conread position:
               
21-279
               

               
Cow position:
               
chr1:8477-8733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
22-242
               

               
Cow position:
               
chr1:13614862-13614652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
7, 76
               

               
Conread position:
               
22-348
               

               
Cow position:
               
chr1:24407031-24406701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
64, 42
               

               
Conread position:
               
23-178
               

               
Cow position:
               
chr1:3776759-3776602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 116
               

               
Conread position:
               
23-216
               

               
Cow position:
               
chr1:100770894-100770697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
22, 127
               

               
Conread position:
               
23-231
               

               
Cow position:
               
chr1:79278589-79278377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
69, 7
               

               
Conread position:
               
23-268
               

               
Cow position:
               
chr1:81355849-81355596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
78, 33
               

               
Conread position:
               
23-279
               

               
Cow position:
               
chr1:86057201-86056957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
23-279
               

               
Cow position:
               
chr1:88618452-88618714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
81, 121
               

               
Conread position:
               
23-279
               

               
Cow position:
               
chr1:99609224-99609486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
78, 115
               

               
Conread position:
               
23-329
               

               
Cow position:
               
chr1:85028814-85029130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
11, 34
               

               
Conread position:
               
23-332
               

               
Cow position:
               
chr1:76019836-76019528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 183
               

               
Conread position:
               
23-340
               

               
Cow position:
               
chr1:58825403-58825726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
61, 33
               

               
Conread position:
               
23-345
               

               
Cow position:
               
chr1:31390734-31390398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
61, 10
               

               
Conread position:
               
23-347
               

               
Cow position:
               
chr1:100400345-100399994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
40, 338
               

               
Conread position:
               
23-351
               

               
Cow position:
               
chr1:68862890-68863236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
66, 33
               

               
Conread position:
               
24-195
               

               
Cow position:
               
chr1:71952940-71953110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
72, 32
               

               
Conread position:
               
24-197
               

               
Cow position:
               
chr1:57264138-57263956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
68, 32
               

               
Conread position:
               
24-206
               

               
Cow position:
               
chr1:43447974-43447784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
13, 33
               

               
Conread position:
               
24-223
               

               
Cow position:
               
chr1:57396074-57395874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
33, 114
               

               
Conread position:
               
24-227
               

               
Cow position:
               
chr1:7609473-7609686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
65, 32
               

               
Conread position:
               
24-244
               

               
Cow position:
               
chr1:85596796-85597021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
35, 158
               

               
Conread position:
               
24-265
               

               
Cow position:
               
chr1:56634955-56635202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
83, 41
               

               
Conread position:
               
24-269
               

               
Cow position:
               
chr1:53622815-53623063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
9, 130
               

               
Conread position:
               
24-277
               

               
Cow position:
               
chr1:101268151-101267888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
39, 65
               

               
Conread position:
               
24-278
               

               
Cow position:
               
chr1:53425032-53425294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
24-278
               

               
Cow position:
               
chr1:77880878-77880617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
84, 39
               

               
Conread position:
               
24-279
               

               
Cow position:
               
chr1:10778424-10778681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 32
               

               
Conread position:
               
24-279
               

               
Cow position:
               
chr1:24133200-24132945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
85, 32
               

               
Conread position:
               
24-279
               

               
Cow position:
               
chr1:31608041-31607771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
9, 195
               

               
Conread position:
               
24-279
               

               
Cow position:
               
chr1:69264673-69264926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 0
               

               
Conread position:
               
24-279
               

               
Cow position:
               
chr1:86340615-86340350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 187
               

               
Conread position:
               
24-306
               

               
Cow position:
               
chr1:48580988-48581274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 111
               

               
Conread position:
               
24-311
               

               
Cow position:
               
chr1:44769255-44768953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
83, 32
               

               
Conread position:
               
24-333
               

               
Cow position:
               
chr1:9534028-9534340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
11, 117
               

               
Conread position:
               
24-346
               

               
Cow position:
               
chr1:39427135-39426804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
62, 32
               

               
Conread position:
               
24-347
               

               
Cow position:
               
chr1:96472303-96472625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
83, 32
               

               
Conread position:
               
24-384
               

               
Cow position:
               
chr1:541660-542027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
9, 40
               

               
Conread position:
               
25-185
               

               
Cow position:
               
chr1:78783405-78783572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
38, 100
               

               
Conread position:
               
26-232
               

               
Cow position:
               
chr1:1185600-1185800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
31, 102
               

               
Conread position:
               
26-242
               

               
Cow position:
               
chr1:96478552-96478781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
35, 114
               

               
Conread position:
               
26-271
               

               
Cow position:
               
chr1:4243483-4243224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
70, 249
               

               
Conread position:
               
26-279
               

               
Cow position:
               
chr1:11226382-11226130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
50, 103
               

               
Conread position:
               
26-279
               

               
Cow position:
               
chr1:31272581-31272325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
83, 30
               

               
Conread position:
               
27-266
               

               
Cow position:
               
chr1:62291830-62291596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
80, 29
               

               
Conread position:
               
27-271
               

               
Cow position:
               
chr1:89349823-89350075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
80, 29
               

               
Conread position:
               
27-273
               

               
Cow position:
               
chr1:54732606-54732375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
27-278
               

               
Cow position:
               
chr1:58036892-58037135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
121, 29
               

               
Conread position:
               
27-278
               

               
Cow position:
               
chr1:89510061-89509804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
82, 29
               

               
Conread position:
               
27-279
               

               
Cow position:
               
chr1:20950582-20950831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
77, 29
               

               
Conread position:
               
27-279
               

               
Cow position:
               
chr1:42887404-42887159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
27-279
               

               
Cow position:
               
chr1:68253452-68253713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
72, 29
               

               
Conread position:
               
27-279
               

               
Cow position:
               
chr1:97231818-97232078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
32, 96
               

               
Conread position:
               
27-280
               

               
Cow position:
               
chr1:18780473-18780210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
74, 39
               

               
Conread position:
               
27-284
               

               
Cow position:
               
chr1:48730963-48730709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 14
               

               
Conread position:
               
28-169
               

               
Cow position:
               
chr1:75967293-75967439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
72, 28
               

               
Conread position:
               
28-178
               

               
Cow position:
               
chr1:64962807-64962650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
28-178
               

               
Cow position:
               
chr1:85826205-85826364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
64, 28
               

               
Conread position:
               
28-181
               

               
Cow position:
               
chr1:56674265-56674106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
28-181
               

               
Cow position:
               
chr1:98557918-98557764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
35, 75
               

               
Conread position:
               
28-183
               

               
Cow position:
               
chr1:33811791-33811952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
28-183
               

               
Cow position:
               
chr1:58419798-58419958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
79, 104
               

               
Conread position:
               
28-183
               

               
Cow position:
               
chr1:81638264-81638427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
35, 117
               

               
Conread position:
               
28-185
               

               
Cow position:
               
chr1:24655823-24655979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
37, 107
               

               
Conread position:
               
28-188
               

               
Cow position:
               
chr1:6961769-6961935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
78, 118
               

               
Conread position:
               
28-188
               

               
Cow position:
               
chr1:11770429-11770265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
28-188
               

               
Cow position:
               
chr1:64421196-64421358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
75, 64
               

               
Conread position:
               
28-192
               

               
Cow position:
               
chr1:3243799-3243967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
76, 107
               

               
Conread position:
               
28-192
               

               
Cow position:
               
chr1:51684662-51684838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
28-192
               

               
Cow position:
               
chr1:82504835-82505007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
28-195
               

               
Cow position:
               
chr1:4573383-4573554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
28-196
               

               
Cow position:
               
chr1:47008893-47009068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
28-198
               

               
Cow position:
               
chr1:48696903-48696734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
28-200
               

               
Cow position:
               
chr1:22448725-22448542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
28-203
               

               
Cow position:
               
chr1:1802001-1802180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
77, 159
               

               
Conread position:
               
28-203
               

               
Cow position:
               
chr1:55163787-55163961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
115, 28
               

               
Conread position:
               
28-207
               

               
Cow position:
               
chr1:45535567-45535753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
79, 37
               

               
Conread position:
               
28-217
               

               
Cow position:
               
chr1:82443595-82443399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
75, 186
               

               
Conread position:
               
28-222
               

               
Cow position:
               
chr1:24445765-24445567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
76, 17
               

               
Conread position:
               
28-222
               

               
Cow position:
               
chr1:61742599-61742400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
76, 117
               

               
Conread position:
               
28-223
               

               
Cow position:
               
chr1:24235655-24235457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
81, 28
               

               
Conread position:
               
28-227
               

               
Cow position:
               
chr1:95100824-95101020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
53, 74
               

               
Conread position:
               
28-229
               

               
Cow position:
               
chr1:1991559-1991350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
28-231
               

               
Cow position:
               
chr1:90864434-90864223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
33, 125
               

               
Conread position:
               
28-232
               

               
Cow position:
               
chr1:1165467-1165670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
28-232
               

               
Cow position:
               
chr1:29451780-29451992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
33, 94
               

               
Conread position:
               
28-232
               

               
Cow position:
               
chr1:52753304-52753089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
28-232
               

               
Cow position:
               
chr1:63390912-63390696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
28-232
               

               
Cow position:
               
chr1:69127304-69127095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
29, 88
               

               
Conread position:
               
28-232
               

               
Cow position:
               
chr1:72103708-72103921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
33, 107
               

               
Conread position:
               
28-238
               

               
Cow position:
               
chr1:4374477-4374260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
57, 15
               

               
Conread position:
               
28-238
               

               
Cow position:
               
chr1:87440330-87440544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
28-239
               

               
Cow position:
               
chr1:55135695-55135914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
78, 28
               

               
Conread position:
               
28-240
               

               
Cow position:
               
chr1:63138700-63138920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
33, 107
               

               
Conread position:
               
28-240
               

               
Cow position:
               
chr1:91800740-91800521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
78, 36
               

               
Conread position:
               
28-242
               

               
Cow position:
               
chr1:6788424-6788202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
28-242
               

               
Cow position:
               
chr1:9470536-9470316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
76, 28
               

               
Conread position:
               
28-242
               

               
Cow position:
               
chr1:57880927-57880703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
33, 110
               

               
Conread position:
               
28-242
               

               
Cow position:
               
chr1:89497827-89498034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
102, 28
               

               
Conread position:
               
28-242
               

               
Cow position:
               
chr1:91816908-91816690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
32, 53
               

               
Conread position:
               
28-244
               

               
Cow position:
               
chr1:98310927-98311155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
28-246
               

               
Cow position:
               
chr1:102647411-102647188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
69, 106
               

               
Conread position:
               
28-248
               

               
Cow position:
               
chr1:46030495-46030274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
64, 120
               

               
Conread position:
               
28-258
               

               
Cow position:
               
chr1:90640890-90641125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
34, 181
               

               
Conread position:
               
28-260
               

               
Cow position:
               
chr1:43703269-43703508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
28-260
               

               
Cow position:
               
chr1:48444332-48444095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
72, 26
               

               
Conread position:
               
28-260
               

               
Cow position:
               
chr1:95178814-95179053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
39, 109
               

               
Conread position:
               
28-263
               

               
Cow position:
               
chr1:51531627-51531853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
35, 74
               

               
Conread position:
               
28-266
               

               
Cow position:
               
chr1:16855829-16855594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
28-268
               

               
Cow position:
               
chr1:20204889-20205134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
73, 95
               

               
Conread position:
               
28-268
               

               
Cow position:
               
chr1:51394283-51394525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
94, 28
               

               
Conread position:
               
28-268
               

               
Cow position:
               
chr1:75141864-75142104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 65
               

               
Conread position:
               
28-270
               

               
Cow position:
               
chr1:101634566-101634821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
79, 35
               

               
Conread position:
               
28-271
               

               
Cow position:
               
chr1:44506829-44507083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
28-271
               

               
Cow position:
               
chr1:60032737-60032492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
68, 104
               

               
Conread position:
               
28-271
               

               
Cow position:
               
chr1:73546041-73545802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
28, 24
               

               
Conread position:
               
28-271
               

               
Cow position:
               
chr1:77683219-77683462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 35
               

               
Conread position:
               
28-271
               

               
Cow position:
               
chr1:81228478-81228224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
34, 244
               

               
Conread position:
               
28-271
               

               
Cow position:
               
chr1:85162682-85162437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
114, 34
               

               
Conread position:
               
28-271
               

               
Cow position:
               
chr1:88652492-88652746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
81, 28
               

               
Conread position:
               
28-271
               

               
Cow position:
               
chr1:89230366-89230121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
78, 28
               

               
Conread position:
               
28-271
               

               
Cow position:
               
chr1:101551323-101551574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
35, 68
               

               
Conread position:
               
28-272
               

               
Cow position:
               
chr1:41696920-41697166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
79, 38
               

               
Conread position:
               
28-272
               

               
Cow position:
               
chr1:82884528-82884284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
81, 28
               

               
Conread position:
               
28-272
               

               
Cow position:
               
chr1:83072305-83072552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
108, 28
               

               
Conread position:
               
28-272
               

               
Cow position:
               
chr1:85647920-85647671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
76, 28
               

               
Conread position:
               
28-273
               

               
Cow position:
               
chr1:21835807-21836043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
28-274
               

               
Cow position:
               
chr1:96964182-96964429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
78, 22
               

               
Conread position:
               
28-275
               

               
Cow position:
               
chr1:41056545-41056792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
123, 27
               

               
Conread position:
               
28-276
               

               
Cow position:
               
chr1:95215320-95215075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 113
               

               
Conread position:
               
28-277
               

               
Cow position:
               
chr1:20732565-20732820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
42, 68
               

               
Conread position:
               
28-277
               

               
Cow position:
               
chr1:22728913-22729172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
28-277
               

               
Cow position:
               
chr1:31934373-31934623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
120, 92
               

               
Conread position:
               
28-277
               

               
Cow position:
               
chr1:76436353-76436596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
28-278
               

               
Cow position:
               
chr1:24581445-24581693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
60, 36
               

               
Conread position:
               
28-278
               

               
Cow position:
               
chr1:24876127-24876379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
34, 65
               

               
Conread position:
               
28-278
               

               
Cow position:
               
chr1:36932019-36932271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
77, 34
               

               
Conread position:
               
28-278
               

               
Cow position:
               
chr1:86110869-86110627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
81, 28
               

               
Conread position:
               
28-278
               

               
Cow position:
               
chr1:86113549-86113283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
30, 43
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:484607-484349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
35, 99
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:874508-874772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
35, 20
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:1877890-1878138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
49, 67
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:2976133-2975876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
36, 20
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:3137789-3138031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
33, 109
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:3923933-3923682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
81, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:4032487-4032750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:4291020-4291282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
29, 192
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:5135832-5135591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
245, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:6941327-6941586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:6958740-6958999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:7748079-7748331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
35, 113
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:7752245-7752497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
35, 113
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:10632910-10633164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
69, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:10942233-10941977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
29, 66
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:10964153-10964409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
29, 66
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:11853824-11853570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
79, 123
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:11914016-11913759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
109, 237
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:12464804-12464546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
80, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:15333743-15334009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
35, 15
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:16767219-16766970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
79, 33
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:16962148-16961892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
79, 107
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:18936968-18936720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
120, 136
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:19145059-19144810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
62, 17
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:20000889-20000631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:21955511-21955257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
71, 145
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:22192625-22192887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:23512793-23512542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:24534392-24534139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:24778123-24777876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
73, 22
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:28563707-28563451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 181
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:29627050-29626795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
49, 35
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:29935516-29935270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
113, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:31348579-31348319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
76, 96
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:33207009-33206762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 26
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:35162269-35162528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:36874876-36875144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:37322140-37321884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
76, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:40192821-40192590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:41252536-41252292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
120, 31
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:43352795-43352538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
17, 25
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:43872469-43872202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:49317635-49317378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:50931114-50930861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:52039498-52039754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
77, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:52435132-52435390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
35, 75
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:52488101-52487863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
30, 74
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:53369940-53370201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
31, 71
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:53397853-53398093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
67, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:53671877-53671632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
160, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:55429094-55428838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 41
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:56225328-56225587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
64, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:57297335-57297607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
29, 264
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:57420866-57420618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
79, 122
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:59518782-59519032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
64, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:61005700-61005445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
48, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:61884781-61885030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
80, 25
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:62964140-62964384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:64804242-64803984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:65909388-65909628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
79, 121
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:67305379-67305124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
48, 35
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:68763820-68763570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
81, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:68817937-68817681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:68855032-68855282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
40, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:69678460-69678207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
77, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:71119374-71119637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
28, 58
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:74084335-74084074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
35, 40
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:74822317-74822569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
216, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:74927742-74928002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:76470514-76470761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
32, 169
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:78809742-78809994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:78857459-78857211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
81, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:79844328-79844583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
74, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:81913286-81913037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
113, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:84812071-84811821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
81, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:87095369-87095096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:87197689-87197938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
106, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:89448759-89449018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
81, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:90621649-90621387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
16, 29
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:90976225-90975971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 109
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:91023606-91023349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
81, 35
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:91066291-91066034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:92997037-92996774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
22, 96
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:93043891-93044135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
106, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:93528556-93528819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
36, 127
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:94226689-94226436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
83, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:96081346-96081597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
32, 209
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:96305114-96304851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
56, 27
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:97611791-97611539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
125, 45
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:97938828-97939075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
35, 114
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:98360543-98360286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
28, 192
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:98413628-98413890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:98551578-98551837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
81, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr1:101822642-101822397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
28, 109
               

               
Conread position:
               
28-280
               

               
Cow position:
               
chr1:68619072-68618814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
39, 28
               

               
Conread position:
               
28-282
               

               
Cow position:
               
chr1:38753779-38754044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
28-282
               

               
Cow position:
               
chr1:71227942-71228213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
30, 196
               

               
Conread position:
               
28-283
               

               
Cow position:
               
chr1:69539559-69539813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
76, 28
               

               
Conread position:
               
28-284
               

               
Cow position:
               
chr1:22525740-22526001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
78, 21
               

               
Conread position:
               
28-286
               

               
Cow position:
               
chr1:51904464-51904214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
79, 52
               

               
Conread position:
               
28-299
               

               
Cow position:
               
chr1:83583072-83582793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
84, 28
               

               
Conread position:
               
28-306
               

               
Cow position:
               
chr1:8287752-8287486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
31, 63
               

               
Conread position:
               
28-306
               

               
Cow position:
               
chr1:53520769-53521058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 127
               

               
Conread position:
               
28-306
               

               
Cow position:
               
chr1:65318437-65318721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 65
               

               
Conread position:
               
28-306
               

               
Cow position:
               
chr1:75744722-75745007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
28-316
               

               
Cow position:
               
chr1:57575897-57575611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
81, 28
               

               
Conread position:
               
28-316
               

               
Cow position:
               
chr1:72068977-72068678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 28
               

               
Conread position:
               
28-330
               

               
Cow position:
               
chr1:81563598-81563919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
28-331
               

               
Cow position:
               
chr1:42138729-42139035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
108, 18
               

               
Conread position:
               
28-332
               

               
Cow position:
               
chr1:30047732-30047430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
110, 37
               

               
Conread position:
               
28-332
               

               
Cow position:
               
chr1:39225063-39224742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
28-332
               

               
Cow position:
               
chr1:75382857-75383160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
234, 28
               

               
Conread position:
               
28-340
               

               
Cow position:
               
chr1:46218443-46218757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
115, 28
               

               
Conread position:
               
28-341
               

               
Cow position:
               
chr1:42545925-42545593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 267
               

               
Conread position:
               
28-341
               

               
Cow position:
               
chr1:70380284-70379960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
81, 28
               

               
Conread position:
               
28-341
               

               
Cow position:
               
chr1:92963260-92963585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
56, 66
               

               
Conread position:
               
28-346
               

               
Cow position:
               
chr1:54199522-54199180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
28-346
               

               
Cow position:
               
chr1:74947261-74946929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
56, 28
               

               
Conread position:
               
28-347
               

               
Cow position:
               
chr1:95176801-95177132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
28-348
               

               
Cow position:
               
chr1:5579921-5580246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
76, 28
               

               
Conread position:
               
28-348
               

               
Cow position:
               
chr1:26729586-26729889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
120, 36
               

               
Conread position:
               
28-348
               

               
Cow position:
               
chr1:53495329-53495636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
81, 175
               

               
Conread position:
               
28-349
               

               
Cow position:
               
chr1:42874085-42873763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
117, 28
               

               
Conread position:
               
28-349
               

               
Cow position:
               
chr1:101632477-101632134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
28-350
               

               
Cow position:
               
chr1:40599905-40600240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
81, 28
               

               
Conread position:
               
28-350
               

               
Cow position:
               
chr1:64678563-64678896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
64, 37
               

               
Conread position:
               
28-350
               

               
Cow position:
               
chr1:88911028-88910713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
106, 28
               

               
Conread position:
               
28-352
               

               
Cow position:
               
chr1:6166103-6166446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
33, 57
               

               
Conread position:
               
28-356
               

               
Cow position:
               
chr1:15547330-15547686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 192
               

               
Conread position:
               
28-356
               

               
Cow position:
               
chr1:68845624-68845284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
35, 65
               

               
Conread position:
               
28-358
               

               
Cow position:
               
chr1:19482213-19481875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
56, 28
               

               
Conread position:
               
28-360
               

               
Cow position:
               
chr1:21787192-21787551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
28-361
               

               
Cow position:
               
chr1:73960567-73960910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
28-367
               

               
Cow position:
               
chr1:41115853-41115507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
28-377
               

               
Cow position:
               
chr1:34159696-34160069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 366
               

               
Conread position:
               
29-232
               

               
Cow position:
               
chr1:19568715-19568921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
78, 23
               

               
Conread position:
               
29-232
               

               
Cow position:
               
chr1:26178948-26178740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
33, 66
               

               
Conread position:
               
29-239
               

               
Cow position:
               
chr1:79590967-79591176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
32, 92
               

               
Conread position:
               
29-242
               

               
Cow position:
               
chr1:29481764-29481550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
32, 98
               

               
Conread position:
               
29-242
               

               
Cow position:
               
chr1:33409765-33409544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
32, 118
               

               
Conread position:
               
29-242
               

               
Cow position:
               
chr1:60707269-60707484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
25, 65
               

               
Conread position:
               
29-259
               

               
Cow position:
               
chr1:69540164-69540380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
29-260
               

               
Cow position:
               
chr1:87211808-87212032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
29-266
               

               
Cow position:
               
chr1:45289009-45288766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
80, 19
               

               
Conread position:
               
29-272
               

               
Cow position:
               
chr1:12978543-12978793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
80, 27
               

               
Conread position:
               
29-272
               

               
Cow position:
               
chr1:67821347-67821112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
189, 11
               

               
Conread position:
               
29-274
               

               
Cow position:
               
chr1:101701782-101701534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
37, 106
               

               
Conread position:
               
29-275
               

               
Cow position:
               
chr1:37707102-37706863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
19, 28
               

               
Conread position:
               
29-277
               

               
Cow position:
               
chr1:44075848-44075603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
31, 64
               

               
Conread position:
               
29-278
               

               
Cow position:
               
chr1:95499629-95499379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
72, 19
               

               
Conread position:
               
29-279
               

               
Cow position:
               
chr1:7971284-7971530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
57, 27
               

               
Conread position:
               
29-279
               

               
Cow position:
               
chr1:23186934-23186681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
32, 63
               

               
Conread position:
               
29-279
               

               
Cow position:
               
chr1:34686057-34686293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
78, 27
               

               
Conread position:
               
29-279
               

               
Cow position:
               
chr1:42175587-42175845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
77, 27
               

               
Conread position:
               
29-279
               

               
Cow position:
               
chr1:43505387-43505647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
78, 27
               

               
Conread position:
               
29-279
               

               
Cow position:
               
chr1:45007332-45007586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
73, 63
               

               
Conread position:
               
29-279
               

               
Cow position:
               
chr1:48105571-48105318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
75, 27
               

               
Conread position:
               
29-279
               

               
Cow position:
               
chr1:49795869-49796110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
76, 27
               

               
Conread position:
               
29-279
               

               
Cow position:
               
chr1:52496644-52496888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
34, 73
               

               
Conread position:
               
29-279
               

               
Cow position:
               
chr1:70538470-70538729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
72, 33
               

               
Conread position:
               
29-279
               

               
Cow position:
               
chr1:75933135-75933384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
78, 27
               

               
Conread position:
               
29-279
               

               
Cow position:
               
chr1:77720372-77720131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
29-279
               

               
Cow position:
               
chr1:88913181-88913437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
78, 27
               

               
Conread position:
               
29-279
               

               
Cow position:
               
chr1:90868576-90868329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
78, 23
               

               
Conread position:
               
29-279
               

               
Cow position:
               
chr1:95056918-95057163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
78, 27
               

               
Conread position:
               
29-279
               

               
Cow position:
               
chr1:97778861-97779109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
23, 77
               

               
Conread position:
               
29-280
               

               
Cow position:
               
chr1:71045617-71045864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
77, 27
               

               
Conread position:
               
29-283
               

               
Cow position:
               
chr1:2075477-2075230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
29-284
               

               
Cow position:
               
chr1:82936723-82936475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
119, 27
               

               
Conread position:
               
29-296
               

               
Cow position:
               
chr1:22827030-22827295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
114, 27
               

               
Conread position:
               
29-341
               

               
Cow position:
               
chr1:31414098-31413796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
215, 27
               

               
Conread position:
               
29-343
               

               
Cow position:
               
chr1:24188095-24188410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
56, 80
               

               
Conread position:
               
29-350
               

               
Cow position:
               
chr1:62732440-62732762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
80, 33
               

               
Conread position:
               
29-351
               

               
Cow position:
               
chr1:70434866-70435200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 27
               

               
Conread position:
               
31-197
               

               
Cow position:
               
chr1:81470997-81471169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
73, 25
               

               
Conread position:
               
31-262
               

               
Cow position:
               
chr1:26943175-26943409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
78, 25
               

               
Conread position:
               
32-183
               

               
Cow position:
               
chr1:52679174-52679318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
116, 24
               

               
Conread position:
               
32-192
               

               
Cow position:
               
chr1:71818592-71818432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
69, 30
               

               
Conread position:
               
32-200
               

               
Cow position:
               
chr1:73561784-73561608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
32-214
               

               
Cow position:
               
chr1:98372498-98372685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
30, 104
               

               
Conread position:
               
32-223
               

               
Cow position:
               
chr1:55260564-55260373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
58, 140
               

               
Conread position:
               
32-223
               

               
Cow position:
               
chr1:60907236-60907439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
32-232
               

               
Cow position:
               
chr1:648189-648396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
32-232
               

               
Cow position:
               
chr1:42398331-42398120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
32-242
               

               
Cow position:
               
chr1:70297143-70297359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
29, 68
               

               
Conread position:
               
32-244
               

               
Cow position:
               
chr1:5023890-5023679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
103, 24
               

               
Conread position:
               
32-258
               

               
Cow position:
               
chr1:55146671-55146895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
68, 11
               

               
Conread position:
               
32-267
               

               
Cow position:
               
chr1:100393295-100393057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
119, 31
               

               
Conread position:
               
32-271
               

               
Cow position:
               
chr1:3167203-3166966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
116, 24
               

               
Conread position:
               
32-271
               

               
Cow position:
               
chr1:7350408-7350658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
75, 24
               

               
Conread position:
               
32-271
               

               
Cow position:
               
chr1:26702342-26702097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
12, 25
               

               
Conread position:
               
32-272
               

               
Cow position:
               
chr1:38401660-38401910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
75, 24
               

               
Conread position:
               
32-272
               

               
Cow position:
               
chr1:52956119-52956362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
69, 24
               

               
Conread position:
               
32-272
               

               
Cow position:
               
chr1:64251186-64250941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
69, 24
               

               
Conread position:
               
32-272
               

               
Cow position:
               
chr1:79165220-79164971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
72, 183
               

               
Conread position:
               
32-272
               

               
Cow position:
               
chr1:81868860-81868619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
69, 32
               

               
Conread position:
               
32-275
               

               
Cow position:
               
chr1:8129101-8128855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
52, 24
               

               
Conread position:
               
32-277
               

               
Cow position:
               
chr1:82337915-82337664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
69, 24
               

               
Conread position:
               
32-278
               

               
Cow position:
               
chr1:19885254-19885498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
52, 24
               

               
Conread position:
               
32-278
               

               
Cow position:
               
chr1:94261408-94261652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
73, 39
               

               
Conread position:
               
32-279
               

               
Cow position:
               
chr1:5597332-5597093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
102, 24
               

               
Conread position:
               
32-279
               

               
Cow position:
               
chr1:11729047-11729293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
73, 24
               

               
Conread position:
               
32-279
               

               
Cow position:
               
chr1:13637807-13637545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
44, 24
               

               
Conread position:
               
32-279
               

               
Cow position:
               
chr1:20667876-20667625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 30
               

               
Conread position:
               
32-279
               

               
Cow position:
               
chr1:39069089-39068838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 24
               

               
Conread position:
               
32-279
               

               
Cow position:
               
chr1:47233613-47233360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
77, 31
               

               
Conread position:
               
32-279
               

               
Cow position:
               
chr1:52994893-52995144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
54, 24
               

               
Conread position:
               
32-279
               

               
Cow position:
               
chr1:53458562-53458813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
64, 24
               

               
Conread position:
               
32-279
               

               
Cow position:
               
chr1:54258429-54258684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 208
               

               
Conread position:
               
32-279
               

               
Cow position:
               
chr1:61742102-61741850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
67, 24
               

               
Conread position:
               
32-279
               

               
Cow position:
               
chr1:71079090-71078843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
77, 22
               

               
Conread position:
               
32-279
               

               
Cow position:
               
chr1:78810905-78811156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
91, 30
               

               
Conread position:
               
32-279
               

               
Cow position:
               
chr1:80336377-80336131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
28, 63
               

               
Conread position:
               
32-279
               

               
Cow position:
               
chr1:84239247-84239005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
69, 24
               

               
Conread position:
               
32-279
               

               
Cow position:
               
chr1:86073460-86073714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
75, 90
               

               
Conread position:
               
32-279
               

               
Cow position:
               
chr1:91811653-91811896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
116, 24
               

               
Conread position:
               
32-279
               

               
Cow position:
               
chr1:93499492-93499738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
60, 31
               

               
Conread position:
               
32-279
               

               
Cow position:
               
chr1:93554709-93554954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
32-279
               

               
Cow position:
               
chr1:95557902-95558155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
72, 52
               

               
Conread position:
               
32-279
               

               
Cow position:
               
chr1:97090193-97090444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
49, 24
               

               
Conread position:
               
32-279
               

               
Cow position:
               
chr1:98461160-98461404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
101, 18
               

               
Conread position:
               
32-279
               

               
Cow position:
               
chr1:102266407-102266150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
32-284
               

               
Cow position:
               
chr1:197138-196883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
63, 24
               

               
Conread position:
               
32-286
               

               
Cow position:
               
chr1:3962826-3962560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
76, 24
               

               
Conread position:
               
32-306
               

               
Cow position:
               
chr1:47886623-47886336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
28, 169
               

               
Conread position:
               
32-306
               

               
Cow position:
               
chr1:94212099-94212371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
75, 146
               

               
Conread position:
               
32-317
               

               
Cow position:
               
chr1:63530439-63530713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
116, 82
               

               
Conread position:
               
32-327
               

               
Cow position:
               
chr1:56229117-56229406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
230, 24
               

               
Conread position:
               
32-332
               

               
Cow position:
               
chr1:60281236-60281546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
75, 24
               

               
Conread position:
               
32-332
               

               
Cow position:
               
chr1:91039307-91039008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
30, 168
               

               
Conread position:
               
32-339
               

               
Cow position:
               
chr1:76613266-76612956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
26, 83
               

               
Conread position:
               
32-340
               

               
Cow position:
               
chr1:54478190-54478522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
75, 24
               

               
Conread position:
               
32-345
               

               
Cow position:
               
chr1:43340753-43340420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
25, 111
               

               
Conread position:
               
32-347
               

               
Cow position:
               
chr1:49433396-49433069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 118
               

               
Conread position:
               
32-349
               

               
Cow position:
               
chr1:39418256-39417920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
69, 226
               

               
Conread position:
               
32-349
               

               
Cow position:
               
chr1:41047434-41047115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
52, 24
               

               
Conread position:
               
32-364
               

               
Cow position:
               
chr1:66430166-66430510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
69, 39
               

               
Conread position:
               
33-228
               

               
Cow position:
               
chr1:53369072-53369272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
74, 39
               

               
Conread position:
               
33-240
               

               
Cow position:
               
chr1:85774327-85774536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
106, 23
               

               
Conread position:
               
33-244
               

               
Cow position:
               
chr1:89485440-89485663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
33-244
               

               
Cow position:
               
chr1:101946843-101946631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
71, 23
               

               
Conread position:
               
33-269
               

               
Cow position:
               
chr1:86279278-86279521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
28, 155
               

               
Conread position:
               
33-273
               

               
Cow position:
               
chr1:100741154-100741390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
59, 30
               

               
Conread position:
               
33-279
               

               
Cow position:
               
chr1:31348050-31347813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
212, 81
               

               
Conread position:
               
33-279
               

               
Cow position:
               
chr1:71643793-71643542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
76, 116
               

               
Conread position:
               
33-279
               

               
Cow position:
               
chr1:72011943-72011695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
33-279
               

               
Cow position:
               
chr1:78838665-78838913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
72, 23
               

               
Conread position:
               
33-279
               

               
Cow position:
               
chr1:84240759-84240998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
59, 23
               

               
Conread position:
               
33-279
               

               
Cow position:
               
chr1:85550211-85549960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 23
               

               
Conread position:
               
33-279
               

               
Cow position:
               
chr1:102349888-102349634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
68, 179
               

               
Conread position:
               
33-287
               

               
Cow position:
               
chr1:51445746-51446011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
74, 150
               

               
Conread position:
               
33-295
               

               
Cow position:
               
chr1:19465924-19466186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
73, 17
               

               
Conread position:
               
33-295
               

               
Cow position:
               
chr1:97954592-97954335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
33-299
               

               
Cow position:
               
chr1:77133623-77133891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
32, 62
               

               
Conread position:
               
33-339
               

               
Cow position:
               
chr1:42555129-42555447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
68, 98
               

               
Conread position:
               
33-348
               

               
Cow position:
               
chr1:25383529-25383855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
58, 23
               

               
Conread position:
               
33-350
               

               
Cow position:
               
chr1:95017652-95017342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
115, 23
               

               
Conread position:
               
34-272
               

               
Cow position:
               
chr1:89381142-89381386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
73, 22
               

               
Conread position:
               
34-278
               

               
Cow position:
               
chr1:42869068-42868823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
27, 75
               

               
Conread position:
               
34-279
               

               
Cow position:
               
chr1:81569163-81568910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
66, 22
               

               
Conread position:
               
34-295
               

               
Cow position:
               
chr1:74956154-74955884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
71, 173
               

               
Conread position:
               
34-332
               

               
Cow position:
               
chr1:93810297-93810590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 22
               

               
Conread position:
               
36-188
               

               
Cow position:
               
chr1:38544591-38544437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
65, 24
               

               
Conread position:
               
36-195
               

               
Cow position:
               
chr1:31235058-31234897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
71, 111
               

               
Conread position:
               
36-220
               

               
Cow position:
               
chr1:10655351-10655540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
24, 102
               

               
Conread position:
               
36-232
               

               
Cow position:
               
chr1:6294628-6294426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 85
               

               
Conread position:
               
36-232
               

               
Cow position:
               
chr1:73682363-73682171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
25, 39
               

               
Conread position:
               
36-232
               

               
Cow position:
               
chr1:83659404-83659207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
22, 61
               

               
Conread position:
               
36-235
               

               
Cow position:
               
chr1:84906198-84905989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
36-240
               

               
Cow position:
               
chr1:78091902-78092116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
25, 102
               

               
Conread position:
               
36-242
               

               
Cow position:
               
chr1:61735565-61735354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
36-244
               

               
Cow position:
               
chr1:7186662-7186871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
24, 73
               

               
Conread position:
               
36-251
               

               
Cow position:
               
chr1:29975731-29975510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
59, 204
               

               
Conread position:
               
36-259
               

               
Cow position:
               
chr1:78079597-78079817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
14, 21
               

               
Conread position:
               
36-272
               

               
Cow position:
               
chr1:724608-724851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
65, 9
               

               
Conread position:
               
36-272
               

               
Cow position:
               
chr1:64572383-64572626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 20
               

               
Conread position:
               
36-277
               

               
Cow position:
               
chr1:102756560-102756317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
70, 105
               

               
Conread position:
               
36-278
               

               
Cow position:
               
chr1:64302378-64302126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
71, 20
               

               
Conread position:
               
36-279
               

               
Cow position:
               
chr1:1956458-1956217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
74, 20
               

               
Conread position:
               
36-279
               

               
Cow position:
               
chr1:34771634-34771385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 26
               

               
Conread position:
               
36-279
               

               
Cow position:
               
chr1:55229854-55230094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
73, 58
               

               
Conread position:
               
36-279
               

               
Cow position:
               
chr1:55357416-55357177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
65, 117
               

               
Conread position:
               
36-279
               

               
Cow position:
               
chr1:71253683-71253438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
63, 26
               

               
Conread position:
               
36-279
               

               
Cow position:
               
chr1:86578820-86579080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
65, 27
               

               
Conread position:
               
36-279
               

               
Cow position:
               
chr1:99642496-99642251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 26
               

               
Conread position:
               
36-280
               

               
Cow position:
               
chr1:78096806-78097046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
98, 20
               

               
Conread position:
               
36-287
               

               
Cow position:
               
chr1:63434936-63434680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
65, 16
               

               
Conread position:
               
37-184
               

               
Cow position:
               
chr1:63905601-63905451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
67, 19
               

               
Conread position:
               
37-197
               

               
Cow position:
               
chr1:22255243-22255406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
90, 19
               

               
Conread position:
               
37-271
               

               
Cow position:
               
chr1:83747817-83748052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
106, 19
               

               
Conread position:
               
37-279
               

               
Cow position:
               
chr1:6228714-6228467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
69, 229
               

               
Conread position:
               
37-279
               

               
Cow position:
               
chr1:8349446-8349206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
26, 98
               

               
Conread position:
               
37-279
               

               
Cow position:
               
chr1:12222734-12222489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
57, 114
               

               
Conread position:
               
37-279
               

               
Cow position:
               
chr1:45555235-45555483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
69, 19
               

               
Conread position:
               
37-347
               

               
Cow position:
               
chr1:37309643-37309338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 109
               

               
Conread position:
               
38-181
               

               
Cow position:
               
chr1:60372392-60372245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 107
               

               
Conread position:
               
38-271
               

               
Cow position:
               
chr1:39510177-39509948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
38-279
               

               
Cow position:
               
chr1:45019935-45019682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
40, 18
               

               
Conread position:
               
38-279
               

               
Cow position:
               
chr1:66898626-66898379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
38-282
               

               
Cow position:
               
chr1:4691466-4691709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
59, 108
               

               
Conread position:
               
38-282
               

               
Cow position:
               
chr1:73196359-73196108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
60, 18
               

               
Conread position:
               
38-282
               

               
Cow position:
               
chr1:100817428-100817662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
61, 25
               

               
Conread position:
               
38-284
               

               
Cow position:
               
chr1:100706001-100706249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
28, 117
               

               
Conread position:
               
38-306
               

               
Cow position:
               
chr1:72035054-72034780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
69, 131
               

               
Conread position:
               
39-232
               

               
Cow position:
               
chr1:5539404-5539205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
39-232
               

               
Cow position:
               
chr1:95637702-95637903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
39-242
               

               
Cow position:
               
chr1:17633324-17633515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
22, 55
               

               
Conread position:
               
39-260
               

               
Cow position:
               
chr1:41181718-41181944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
68, 24
               

               
Conread position:
               
39-274
               

               
Cow position:
               
chr1:99512380-99512153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
39-279
               

               
Cow position:
               
chr1:34300677-34300433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
60, 17
               

               
Conread position:
               
39-279
               

               
Cow position:
               
chr1:42256631-42256384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
68, 218
               

               
Conread position:
               
39-279
               

               
Cow position:
               
chr1:62519230-62519481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
68, 153
               

               
Conread position:
               
39-279
               

               
Cow position:
               
chr1:72105286-72105524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
68, 8
               

               
Conread position:
               
39-279
               

               
Cow position:
               
chr1:84255631-84255885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
39-279
               

               
Cow position:
               
chr1:100569024-100569274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
39-279
               

               
Cow position:
               
chr1:100800229-100800469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
84, 17
               

               
Conread position:
               
39-279
               

               
Cow position:
               
chr1:101834697-101834933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
49, 17
               

               
Conread position:
               
39-283
               

               
Cow position:
               
chr1:47658221-47658468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
64, 25
               

               
Conread position:
               
39-330
               

               
Cow position:
               
chr1:36998065-36998349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 100
               

               
Conread position:
               
39-341
               

               
Cow position:
               
chr1:100450311-100449986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
23, 172
               

               
Conread position:
               
39-350
               

               
Cow position:
               
chr1:6304992-6304659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
17, 116
               

               
Conread position:
               
40-213
               

               
Cow position:
               
chr1:57635335-57635514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
61, 24
               

               
Conread position:
               
40-232
               

               
Cow position:
               
chr1:84282947-84283144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
64, 106
               

               
Conread position:
               
40-244
               

               
Cow position:
               
chr1:68951501-68951708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
61, 23
               

               
Conread position:
               
40-246
               

               
Cow position:
               
chr1:635065-635280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
21, 46
               

               
Conread position:
               
40-278
               

               
Cow position:
               
chr1:51417646-51417888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
56, 16
               

               
Conread position:
               
40-279
               

               
Cow position:
               
chr1:13548113-13547859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
18, 51
               

               
Conread position:
               
40-279
               

               
Cow position:
               
chr1:17196755-17196509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
67, 5
               

               
Conread position:
               
40-279
               

               
Cow position:
               
chr1:100551842-100552093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
40-295
               

               
Cow position:
               
chr1:4414334-4414079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
69, 16
               

               
Conread position:
               
41-279
               

               
Cow position:
               
chr1:43389175-43388934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
58, 15
               

               
Conread position:
               
43-278
               

               
Cow position:
               
chr1:71666065-71665820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
14, 218
               

               
Conread position:
               
43-279
               

               
Cow position:
               
chr1:38278161-38277911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
23, 232
               

               
Conread position:
               
43-279
               

               
Cow position:
               
chr1:53374307-53374546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
58, 130
               

               
Conread position:
               
43-279
               

               
Cow position:
               
chr1:70422181-70422422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
53, 109
               

               
Conread position:
               
43-279
               

               
Cow position:
               
chr1:72813489-72813734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
19, 128
               

               
Conread position:
               
43-279
               

               
Cow position:
               
chr1:74929837-74929593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
53, 78
               

               
Conread position:
               
43-279
               

               
Cow position:
               
chr1:89076758-89076515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
23, 109
               

               
Conread position:
               
43-314
               

               
Cow position:
               
chr1:22836274-22836556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
98, 211
               

               
Conread position:
               
43-329
               

               
Cow position:
               
chr1:20099248-20099541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
96, 13
               

               
Conread position:
               
44-242
               

               
Cow position:
               
chr1:3429635-3429428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
44-269
               

               
Cow position:
               
chr1:27145772-27145545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
57, 12
               

               
Conread position:
               
44-272
               

               
Cow position:
               
chr1:20104146-20104377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
95, 12
               

               
Conread position:
               
44-275
               

               
Cow position:
               
chr1:56477468-56477706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
57, 12
               

               
Conread position:
               
44-278
               

               
Cow position:
               
chr1:80422154-80422389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
20, 100
               

               
Conread position:
               
44-279
               

               
Cow position:
               
chr1:43311898-43311653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 18
               

               
Conread position:
               
44-279
               

               
Cow position:
               
chr1:70227815-70227576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
65, 39
               

               
Conread position:
               
44-279
               

               
Cow position:
               
chr1:81613267-81613507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
65, 12
               

               
Conread position:
               
44-279
               

               
Cow position:
               
chr1:91875031-91874799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
65, 12
               

               
Conread position:
               
44-330
               

               
Cow position:
               
chr1:72286179-72285899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
252, 12
               

               
Conread position:
               
44-341
               

               
Cow position:
               
chr1:3607688-3608001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
60, 11
               

               
Conread position:
               
45-279
               

               
Cow position:
               
chr1:7442861-7443094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
62, 106
               

               
Conread position:
               
45-279
               

               
Cow position:
               
chr1:50964250-50964012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
52, 17
               

               
Conread position:
               
45-279
               

               
Cow position:
               
chr1:78697893-78697654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
15, 41
               

               
Conread position:
               
46-211
               

               
Cow position:
               
chr1:22394674-22394854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
46-224
               

               
Cow position:
               
chr1:8984805-8984619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
61, 10
               

               
Conread position:
               
47-279
               

               
Cow position:
               
chr1:7023000-7023239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
47-279
               

               
Cow position:
               
chr1:84104173-84103943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
50, 102
               

               
Conread position:
               
47-279
               

               
Cow position:
               
chr1:89785792-89786027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
60, 9
               

               
Conread position:
               
47-341
               

               
Cow position:
               
chr1:21577689-21577987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
45, 85
               

               
Conread position:
               
47-357
               

               
Cow position:
               
chr1:31499508-31499823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
87, 134
               

               
Conread position:
               
49-219
               

               
Cow position:
               
chr1:36276375-36276551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
49-268
               

               
Cow position:
               
chr1:92433883-92434106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
58, 7
               

               
Conread position:
               
49-279
               

               
Cow position:
               
chr1:21092997-21093234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
24, 220
               

               
Conread position:
               
49-279
               

               
Cow position:
               
chr1:42541478-42541716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
48, 88
               

               
Conread position:
               
50-232
               

               
Cow position:
               
chr1:14309154-14308961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
50-279
               

               
Cow position:
               
chr1:6826405-6826181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
50-279
               

               
Cow position:
               
chr1:98594460-98594683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
14, 130
               

               
Conread position:
               
51-279
               

               
Cow position:
               
chr1:42482087-42482315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
56, 83
               

               
Conread position:
               
51-279
               

               
Cow position:
               
chr1:101866612-101866380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
55, 21
               

               
Conread position:
               
52-232
               

               
Cow position:
               
chr1:45285543-45285734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
52-279
               

               
Cow position:
               
chr1:98511813-98512044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
52, 99
               

               
Conread position:
               
53-279
               

               
Cow position:
               
chr1:627848-628084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
53, 13
               

               
Conread position:
               
53-279
               

               
Cow position:
               
chr1:78794339-78794113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
48, 88
               

               
Conread position:
               
53-340
               

               
Cow position:
               
chr1:81582008-81582300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
143, 56
               

               
Conread position:
               
55-275
               

               
Cow position:
               
chr1:30189035-30189266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
52, 13
               

               
Conread position:
               
55-291
               

               
Cow position:
               
chr1:65028417-65028666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
56-224
               

               
Cow position:
               
chr1:57639633-57639452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
56-226
               

               
Cow position:
               
chr1:9166880-9166713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
94, 62
               

               
Conread position:
               
56-274
               

               
Cow position:
               
chr1:22944137-22943915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
48, 152
               

               
Conread position:
               
56-275
               

               
Cow position:
               
chr1:61543029-61542805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
51, 150
               

               
Conread position:
               
56-279
               

               
Cow position:
               
chr1:3352805-3352582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 135
               

               
Conread position:
               
56-279
               

               
Cow position:
               
chr1:9013428-9013652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
51, 76
               

               
Conread position:
               
56-279
               

               
Cow position:
               
chr1:25734757-25734985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
51, 82
               

               
Conread position:
               
56-279
               

               
Cow position:
               
chr1:30418149-30417930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
53, 95
               

               
Conread position:
               
56-279
               

               
Cow position:
               
chr1:32001432-32001203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
51, 155
               

               
Conread position:
               
56-279
               

               
Cow position:
               
chr1:54156843-54156616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 78
               

               
Conread position:
               
56-279
               

               
Cow position:
               
chr1:56618762-56618537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
45, 177
               

               
Conread position:
               
56-279
               

               
Cow position:
               
chr1:81580063-81580295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
8, 164
               

               
Conread position:
               
56-280
               

               
Cow position:
               
chr1:89835137-89835370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
10, 179
               

               
Conread position:
               
56-284
               

               
Cow position:
               
chr1:69695103-69694870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
51, 126
               

               
Conread position:
               
56-286
               

               
Cow position:
               
chr1:68827015-68826787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
49, 9
               

               
Conread position:
               
56-287
               

               
Cow position:
               
chr1:56225682-56225911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 84
               

               
Conread position:
               
56-301
               

               
Cow position:
               
chr1:40482514-40482272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
52, 91
               

               
Conread position:
               
56-306
               

               
Cow position:
               
chr1:3323760-3324018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
80, 206
               

               
Conread position:
               
56-343
               

               
Cow position:
               
chr1:87936788-87937079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
51, 95
               

               
Conread position:
               
56-351
               

               
Cow position:
               
chr1:47790773-47790450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
29, 38
               

               
Conread position:
               
57-278
               

               
Cow position:
               
chr1:43855191-43855412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
45, 103
               

               
Conread position:
               
57-279
               

               
Cow position:
               
chr1:7739844-7740065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
81, 50
               

               
Conread position:
               
57-279
               

               
Cow position:
               
chr1:26895085-26894854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
48, 11
               

               
Conread position:
               
57-279
               

               
Cow position:
               
chr1:42360172-42360406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
79, 42
               

               
Conread position:
               
57-279
               

               
Cow position:
               
chr1:92989479-92989708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
50, 195
               

               
Conread position:
               
57-326
               

               
Cow position:
               
chr1:26427972-26427689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
45, 66
               

               
Conread position:
               
57-348
               

               
Cow position:
               
chr1:52052831-52052522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
50, 294
               

               
Conread position:
               
57-372
               

               
Cow position:
               
chr1:43822290-43822596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
52, 149
               

               
Conread position:
               
58-276
               

               
Cow position:
               
chr1:100421723-100421935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
43, 82
               

               
Conread position:
               
58-278
               

               
Cow position:
               
chr1:79660510-79660285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
49, 7
               

               
Conread position:
               
58-279
               

               
Cow position:
               
chr1:81290398-81290624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
58-279
               

               
Cow position:
               
chr1:81515142-81515351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
59-284
               

               
Cow position:
               
chr1:67919039-67919257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
60-279
               

               
Cow position:
               
chr1:22823799-22824023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
32, 6
               

               
Conread position:
               
60-279
               

               
Cow position:
               
chr1:77424995-77425220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
41, 60
               

               
Conread position:
               
61-242
               

               
Cow position:
               
chr1:61560828-61560642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
44, 36
               

               
Conread position:
               
61-272
               

               
Cow position:
               
chr1:6752334-6752120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
61-279
               

               
Cow position:
               
chr1:3605984-3605767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
28, 70
               

               
Conread position:
               
61-279
               

               
Cow position:
               
chr1:6972423-6972644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
46, 98
               

               
Conread position:
               
61-279
               

               
Cow position:
               
chr1:62036704-62036920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
69, 17
               

               
Conread position:
               
61-373
               

               
Cow position:
               
chr1:82880538-82880866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
46, 144
               

               
Conread position:
               
62-279
               

               
Cow position:
               
chr1:87072592-87072813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
44, 116
               

               
Conread position:
               
63-276
               

               
Cow position:
               
chr1:88397944-88397730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
74, 58
               

               
Conread position:
               
63-332
               

               
Cow position:
               
chr1:28176905-28177177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
44, 73
               

               
Conread position:
               
64-279
               

               
Cow position:
               
chr1:33997021-33996806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
84, 74
               

               
Conread position:
               
65-279
               

               
Cow position:
               
chr1:71350825-71350609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
42, 83
               

               
Conread position:
               
66-268
               

               
Cow position:
               
chr1:19227156-19226950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
66-279
               

               
Cow position:
               
chr1:98583662-98583871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
126, 73
               

               
Conread position:
               
67-254
               

               
Cow position:
               
chr1:55818961-55819144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
34, 84
               

               
Conread position:
               
67-279
               

               
Cow position:
               
chr1:186371-186163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
40, 7
               

               
Conread position:
               
67-279
               

               
Cow position:
               
chr1:77232668-77232460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
68-279
               

               
Cow position:
               
chr1:29474445-29474232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
24, 66
               

               
Conread position:
               
68-279
               

               
Cow position:
               
chr1:75250013-75250228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
20, 124
               

               
Conread position:
               
68-284
               

               
Cow position:
               
chr1:1499790-1499569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 67
               

               
Conread position:
               
68-306
               

               
Cow position:
               
chr1:22730646-22730877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
46, 62
               

               
Conread position:
               
69-279
               

               
Cow position:
               
chr1:37726513-37726301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
35, 62
               

               
Conread position:
               
69-279
               

               
Cow position:
               
chr1:38418934-38419141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
35, 62
               

               
Conread position:
               
69-279
               

               
Cow position:
               
chr1:60986895-60987107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
69, 32
               

               
Conread position:
               
69-279
               

               
Cow position:
               
chr1:65103521-65103733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
38, 139
               

               
Conread position:
               
71-272
               

               
Cow position:
               
chr1:45670542-45670743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
30, 49
               

               
Conread position:
               
71-279
               

               
Cow position:
               
chr1:46783223-46783429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
67, 75
               

               
Conread position:
               
73-279
               

               
Cow position:
               
chr1:71796408-71796194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
28, 148
               

               
Conread position:
               
75-240
               

               
Cow position:
               
chr1:72684604-72684771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
32, 130
               

               
Conread position:
               
76-271
               

               
Cow position:
               
chr1:4581418-4581220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
47, 55
               

               
Conread position:
               
77-284
               

               
Cow position:
               
chr1:50991844-50992056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
83-279
               

               
Cow position:
               
chr1:3815775-3815567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
22, 117
               

               
Conread position:
               
89-348
               

               
Cow position:
               
chr1:62235520-62235242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
59, 111
               

               
Conread position:
               
96-230
               

               
Cow position:
               
chr1:6287082-6287217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
47, 31
               

               
Conread position:
               
98-238
               

               
Cow position:
               
chr1:32044032-32043890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
98-280
               

               
Cow position:
               
chr1:96583664-96583473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
99-279
               

               
Cow position:
               
chr1:68127250-68127072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
16, 31
               

               
Conread position:
               
99-279
               

               
Cow position:
               
chr1:73936214-73936026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
99-279
               

               
Cow position:
               
chr1:76658142-76657949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
100-277
               

               
Cow position:
               
chr1:6854364-6854192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
39, 9
               

               
Conread position:
               
100-279
               

               
Cow position:
               
chr1:6394497-6394675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
165, 47
               

               
Conread position:
               
100-279
               

               
Cow position:
               
chr1:79003912-79004089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
35, 119
               

               
Conread position:
               
100-279
               

               
Cow position:
               
chr1:99221416-99221238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
38, 101
               

               
Conread position:
               
100-346
               

               
Cow position:
               
chr1:30504440-30504678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
234, 177
               

               
Conread position:
               
101-272
               

               
Cow position:
               
chr1:86912378-86912551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
101-274
               

               
Cow position:
               
chr1:30983551-30983383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
155, 31
               

               
Conread position:
               
101-279
               

               
Cow position:
               
chr1:6240339-6240164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
40, 46
               

               
Conread position:
               
101-279
               

               
Cow position:
               
chr1:43312093-43311913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
101-279
               

               
Cow position:
               
chr1:46764813-46764993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
37, 155
               

               
Conread position:
               
101-279
               

               
Cow position:
               
chr1:52662235-52662055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
34, 73
               

               
Conread position:
               
101-279
               

               
Cow position:
               
chr1:77892080-77892253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
101-279
               

               
Cow position:
               
chr1:88359820-88359996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
101-279
               

               
Cow position:
               
chr1:92684752-92684576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
76, 43
               

               
Conread position:
               
101-279
               

               
Cow position:
               
chr1:95072269-95072450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
101-279
               

               
Cow position:
               
chr1:102753792-102753977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
101-345
               

               
Cow position:
               
chr1:96599341-96599092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
140, 34
               

               
Conread position:
               
101-372
               

               
Cow position:
               
chr1:43548117-43547829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
28, 83
               

               
Conread position:
               
102-279
               

               
Cow position:
               
chr1:24792005-24791828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
7, 44
               

               
Conread position:
               
103-272
               

               
Cow position:
               
chr1:30136413-30136243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
32, 97
               

               
Conread position:
               
103-277
               

               
Cow position:
               
chr1:61846087-61846260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
47, 24
               

               
Conread position:
               
103-278
               

               
Cow position:
               
chr1:48769745-48769919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
103-278
               

               
Cow position:
               
chr1:82942228-82942399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
162, 43
               

               
Conread position:
               
103-278
               

               
Cow position:
               
chr1:82944330-82944159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
162, 43
               

               
Conread position:
               
103-279
               

               
Cow position:
               
chr1:235813-235644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
27, 42
               

               
Conread position:
               
103-279
               

               
Cow position:
               
chr1:6589982-6590151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
103-279
               

               
Cow position:
               
chr1:8624508-8624332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
45, 152
               

               
Conread position:
               
103-279
               

               
Cow position:
               
chr1:17317422-17317242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
36, 109
               

               
Conread position:
               
103-279
               

               
Cow position:
               
chr1:19515673-19515501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
103-279
               

               
Cow position:
               
chr1:45223521-45223699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
103-279
               

               
Cow position:
               
chr1:49825128-49824946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
103-279
               

               
Cow position:
               
chr1:67688637-67688465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
103-279
               

               
Cow position:
               
chr1:68672658-68672484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
39, 85
               

               
Conread position:
               
103-279
               

               
Cow position:
               
chr1:77739657-77739839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
21, 165
               

               
Conread position:
               
103-279
               

               
Cow position:
               
chr1:78068123-78067952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
103-279
               

               
Cow position:
               
chr1:95153161-95153340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
24, 78
               

               
Conread position:
               
103-279
               

               
Cow position:
               
chr1:98575987-98576165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
103-279
               

               
Cow position:
               
chr1:100474173-100474352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
103-295
               

               
Cow position:
               
chr1:56832832-56832643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
173, 13
               

               
Conread position:
               
103-347
               

               
Cow position:
               
chr1:39121898-39121652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
26, 108
               

               
Conread position:
               
103-350
               

               
Cow position:
               
chr1:101507299-101507568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
14, 154
               

               
Conread position:
               
103-351
               

               
Cow position:
               
chr1:25281719-25281460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
104-272
               

               
Cow position:
               
chr1:33998699-33998867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
32, 106
               

               
Conread position:
               
104-278
               

               
Cow position:
               
chr1:8347066-8347240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
104-279
               

               
Cow position:
               
chr1:22035551-22035729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
20, 54
               

               
Conread position:
               
104-279
               

               
Cow position:
               
chr1:27881555-27881725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
104-327
               

               
Cow position:
               
chr1:97962585-97962817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
45, 91
               

               
Conread position:
               
105-279
               

               
Cow position:
               
chr1:68676305-68676480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
168, 66
               

               
Conread position:
               
105-279
               

               
Cow position:
               
chr1:95974338-95974518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
106-279
               

               
Cow position:
               
chr1:71916174-71916002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
42, 17
               

               
Conread position:
               
106-279
               

               
Cow position:
               
chr1:81481440-81481264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
107-279
               

               
Cow position:
               
chr1:84768934-84768761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
107-357
               

               
Cow position:
               
chr1:64113849-64113591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
30, 198
               

               
Conread position:
               
108-228
               

               
Cow position:
               
chr1:99311483-99311361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
108-268
               

               
Cow position:
               
chr1:69482005-69481841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
110-279
               

               
Cow position:
               
chr1:500121-500293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
114-278
               

               
Cow position:
               
chr1:84203465-84203628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
24, 92
               

               
Conread position:
               
114-365
               

               
Cow position:
               
chr1:62321866-62322120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
158, 50
               

               
Conread position:
               
115-306
               

               
Cow position:
               
chr1:17055948-17056134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
176, 94
               

               
Conread position:
               
118-279
               

               
Cow position:
               
chr1:7907992-7908155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
119-278
               

               
Cow position:
               
chr1:71790192-71790033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
16, 125
               

               
Conread position:
               
119-279
               

               
Cow position:
               
chr1:59147389-59147227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
30, 98
               

               
Conread position:
               
119-279
               

               
Cow position:
               
chr1:100852673-100852827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
119-346
               

               
Cow position:
               
chr1:92590152-92590383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
18, 53
               

               
Conread position:
               
121-284
               

               
Cow position:
               
chr1:2462342-2462499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
21, 11
               

               
Conread position:
               
123-279
               

               
Cow position:
               
chr1:95835836-95835680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
123-284
               

               
Cow position:
               
chr1:8670733-8670896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
124-279
               

               
Cow position:
               
chr1:102768144-102768295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
8, 24
               

               
Conread position:
               
125-279
               

               
Cow position:
               
chr1:99322600-99322445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
25, 119
               

               
Conread position:
               
126-279
               

               
Cow position:
               
chr1:28470794-28470948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
8, 18
               

               
Conread position:
               
126-279
               

               
Cow position:
               
chr1:98897725-98897576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
128-279
               

               
Cow position:
               
chr1:6731151-6731298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
129-279
               

               
Cow position:
               
chr1:31256254-31256108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
129-279
               

               
Cow position:
               
chr1:101177483-101177633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
130-277
               

               
Cow position:
               
chr1:9143691-9143834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
130-356
               

               
Cow position:
               
chr1:5006131-5006366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
144, 85
               

               
Conread position:
               
131-277
               

               
Cow position:
               
chr1:81629880-81629734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
17, 132
               

               
Conread position:
               
131-279
               

               
Cow position:
               
chr1:72422440-72422291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
17, 96
               

               
Conread position:
               
132-274
               

               
Cow position:
               
chr1:97144492-97144353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
85, 15
               

               
Conread position:
               
132-279
               

               
Cow position:
               
chr1:42537354-42537204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
19, 118
               

               
Conread position:
               
132-279
               

               
Cow position:
               
chr1:45478887-45478745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
132-279
               

               
Cow position:
               
chr1:76735507-76735363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
132-279
               

               
Cow position:
               
chr1:95676317-95676173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
5, 15
               

               
Conread position:
               
132-340
               

               
Cow position:
               
chr1:38205447-38205657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
145, 15
               

               
Conread position:
               
132-348
               

               
Cow position:
               
chr1:74082010-74081786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
6, 14
               

               
Conread position:
               
133-279
               

               
Cow position:
               
chr1:20864030-20864171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
134-279
               

               
Cow position:
               
chr1:67529026-67529173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
135-279
               

               
Cow position:
               
chr1:57089708-57089563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
7, 113
               

               
Conread position:
               
135-328
               

               
Cow position:
               
chr1:99071104-99071305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
54, 144
               

               
Conread position:
               
135-342
               

               
Cow position:
               
chr1:47402501-47402713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
10, 108
               

               
Conread position:
               
136-279
               

               
Cow position:
               
chr1:852146-852288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
137-279
               

               
Cow position:
               
chr1:95618618-95618760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
138-279
               

               
Cow position:
               
chr1:38706878-38706736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
138-279
               

               
Cow position:
               
chr1:54157271-54157414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
138-279
               

               
Cow position:
               
chr1:102648253-102648396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
139-265
               

               
Cow position:
               
chr1:77265415-77265537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
139-276
               

               
Cow position:
               
chr1:73721337-73721476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
9, 130
               

               
Conread position:
               
139-279
               

               
Cow position:
               
chr1:66752649-66752511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
139-279
               

               
Cow position:
               
chr1:81809161-81809021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
10, 46
               

               
Conread position:
               
139-279
               

               
Cow position:
               
chr1:85712418-85712557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
139-295
               

               
Cow position:
               
chr1:5637081-5636924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
141-279
               

               
Cow position:
               
chr1:242537-242675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
142-279
               

               
Cow position:
               
chr1:96558869-96558731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
24, 109
               

               
Conread position:
               
143-276
               

               
Cow position:
               
chr1:56711617-56711488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
144-279
               

               
Cow position:
               
chr1:65638898-65639028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
144-279
               

               
Cow position:
               
chr1:90267704-90267838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
147-276
               

               
Cow position:
               
chr1:24561523-24561394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
147-276
               

               
Cow position:
               
chr1:24570961-24570832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
147-278
               

               
Cow position:
               
chr1:73719447-73719578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
147-279
               

               
Cow position:
               
chr1:3914932-3914801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
147-279
               

               
Cow position:
               
chr1:45874092-45873952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
147-279
               

               
Cow position:
               
chr1:49980696-49980827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
147-279
               

               
Cow position:
               
chr1:51860575-51860443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
147-279
               

               
Cow position:
               
chr1:61011167-61011299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
147-279
               

               
Cow position:
               
chr1:63078996-63079125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
147-279
               

               
Cow position:
               
chr1:65881793-65881923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
147-279
               

               
Cow position:
               
chr1:69940837-69940705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
147-279
               

               
Cow position:
               
chr1:81858916-81858782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
147-329
               

               
Cow position:
               
chr1:88111861-88112040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
150, 50
               

               
Conread position:
               
148-279
               

               
Cow position:
               
chr1:6381759-6381889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
148-340
               

               
Cow position:
               
chr1:62142497-62142301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
27, 101
               

               
Conread position:
               
149-332
               

               
Cow position:
               
chr1:98636693-98636870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
150-279
               

               
Cow position:
               
chr1:759429-759300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
150-279
               

               
Cow position:
               
chr1:19304561-19304688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
150-279
               

               
Cow position:
               
chr1:31855258-31855129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
150-279
               

               
Cow position:
               
chr1:45315647-45315518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
150-279
               

               
Cow position:
               
chr1:64019532-64019403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
151-277
               

               
Cow position:
               
chr1:95152861-95152987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
151-279
               

               
Cow position:
               
chr1:22461248-22461120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
151-279
               

               
Cow position:
               
chr1:83301962-83301832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
151-287
               

               
Cow position:
               
chr1:52429670-52429534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
154-279
               

               
Cow position:
               
chr1:41027068-41027192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
154-279
               

               
Cow position:
               
chr1:92603011-92603137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
9, 101
               

               
Conread position:
               
155-279
               

               
Cow position:
               
chr1:69445323-69445450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
155-279
               

               
Cow position:
               
chr1:95516033-95516157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
155-279
               

               
Cow position:
               
chr1:101525931-101525807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
156-279
               

               
Cow position:
               
chr1:73551515-73551390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
162-279
               

               
Cow position:
               
chr1:32014199-32014314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
162-324
               

               
Cow position:
               
chr1:19997971-19997807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
115, 84
               

               
Conread position:
               
164-284
               

               
Cow position:
               
chr1:36613257-36613137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
168-279
               

               
Cow position:
               
chr1:73494589-73494478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
168-352
               

               
Cow position:
               
chr1:63313136-63313317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
111, 29
               

               
Conread position:
               
171-278
               

               
Cow position:
               
chr1:46172615-46172722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
171-279
               

               
Cow position:
               
chr1:46100830-46100722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
171-279
               

               
Cow position:
               
chr1:81179338-81179225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
171-279
               

               
Cow position:
               
chr1:81364270-81364378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
171-341
               

               
Cow position:
               
chr1:81638558-81638746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
172-274
               

               
Cow position:
               
chr1:6989161-6989263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
172-277
               

               
Cow position:
               
chr1:83606439-83606334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
172-279
               

               
Cow position:
               
chr1:45673765-45673872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
172-360
               

               
Cow position:
               
chr1:64706504-64706693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
123, 56
               

               
Conread position:
               
172-363
               

               
Cow position:
               
chr1:22153705-22153894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
162, 30
               

               
Conread position:
               
173-279
               

               
Cow position:
               
chr1:42822283-42822389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
176-279
               

               
Cow position:
               
chr1:43148530-43148427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
176-279
               

               
Cow position:
               
chr1:45283209-45283311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
176-287
               

               
Cow position:
               
chr1:55194231-55194120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
176-331
               

               
Cow position:
               
chr1:32787939-32787784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
64, 32
               

               
Conread position:
               
177-279
               

               
Cow position:
               
chr1:1875404-1875505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
180-279
               

               
Cow position:
               
chr1:23055066-23055165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
180-279
               

               
Cow position:
               
chr1:84288422-84288521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
180-279
               

               
Cow position:
               
chr1:99024212-99024113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
180-306
               

               
Cow position:
               
chr1:32035691-32035567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
181-279
               

               
Cow position:
               
chr1:86383786-86383688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
184-279
               

               
Cow position:
               
chr1:52506149-52506054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.