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Cow genome map

           
Conread name:
           
Ss1.1-Ova1-OVRM10117D04.5
        

               
Conread position:
               
7-242
               

               
Cow position:
               
chr5:5201776-5202002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
20, 99
               

               
Conread position:
               
7-279
               

               
Cow position:
               
chr5:50722909-50723184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
97, 19
               

               
Conread position:
               
9-232
               

               
Cow position:
               
chr5:11540185-11539959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
94, 12
               

               
Conread position:
               
9-279
               

               
Cow position:
               
chr5:56014597-56014869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
83, 20
               

               
Conread position:
               
20-232
               

               
Cow position:
               
chr5:37255458-37255244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
41, 73
               

               
Conread position:
               
22-272
               

               
Cow position:
               
chr5:57074461-57074200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
12, 42
               

               
Conread position:
               
22-279
               

               
Cow position:
               
chr5:14473542-14473265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
23-199
               

               
Cow position:
               
chr5:1027818-1027636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
15, 111
               

               
Conread position:
               
23-232
               

               
Cow position:
               
chr5:66815699-66815481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
43, 113
               

               
Conread position:
               
23-244
               

               
Cow position:
               
chr5:43738077-43737860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
69, 27
               

               
Conread position:
               
23-272
               

               
Cow position:
               
chr5:60599309-60599075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
234, 66
               

               
Conread position:
               
23-279
               

               
Cow position:
               
chr5:12673586-12673340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
82, 33
               

               
Conread position:
               
23-279
               

               
Cow position:
               
chr5:36868616-36868873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
100, 16
               

               
Conread position:
               
23-279
               

               
Cow position:
               
chr5:39258399-39258643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
23-279
               

               
Cow position:
               
chr5:43992197-43992462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
23-279
               

               
Cow position:
               
chr5:69337705-69337958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
59, 40
               

               
Conread position:
               
23-283
               

               
Cow position:
               
chr5:35826479-35826744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
86, 33
               

               
Conread position:
               
23-284
               

               
Cow position:
               
chr5:43923272-43923019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
106, 71
               

               
Conread position:
               
23-296
               

               
Cow position:
               
chr5:72564636-72564919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
24-236
               

               
Cow position:
               
chr5:73080079-73080300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
83, 32
               

               
Conread position:
               
24-279
               

               
Cow position:
               
chr5:3771718-3771984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
35, 162
               

               
Conread position:
               
24-279
               

               
Cow position:
               
chr5:16214565-16214825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
76, 6
               

               
Conread position:
               
24-279
               

               
Cow position:
               
chr5:37645949-37646219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
13, 34
               

               
Conread position:
               
24-279
               

               
Cow position:
               
chr5:37808799-37808525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
24-279
               

               
Cow position:
               
chr5:49919801-49920062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
77, 24
               

               
Conread position:
               
24-280
               

               
Cow position:
               
chr5:41164965-41165227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
82, 19
               

               
Conread position:
               
24-283
               

               
Cow position:
               
chr5:32975676-32975417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
42, 101
               

               
Conread position:
               
24-284
               

               
Cow position:
               
chr5:41713179-41713442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 32
               

               
Conread position:
               
24-286
               

               
Cow position:
               
chr5:7057529-7057258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
37, 210
               

               
Conread position:
               
24-287
               

               
Cow position:
               
chr5:20422307-20422047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
69, 32
               

               
Conread position:
               
24-298
               

               
Cow position:
               
chr5:72006977-72006709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
77, 32
               

               
Conread position:
               
24-306
               

               
Cow position:
               
chr5:42845729-42845428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
33, 238
               

               
Conread position:
               
24-340
               

               
Cow position:
               
chr5:27102917-27102585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
86, 32
               

               
Conread position:
               
25-366
               

               
Cow position:
               
chr5:28230035-28230397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
74, 23
               

               
Conread position:
               
26-200
               

               
Cow position:
               
chr5:49362109-49361933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
35, 63
               

               
Conread position:
               
26-207
               

               
Cow position:
               
chr5:28957734-28957548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
26-232
               

               
Cow position:
               
chr5:34049990-34050209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
35, 114
               

               
Conread position:
               
26-279
               

               
Cow position:
               
chr5:16206276-16206017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
81, 30
               

               
Conread position:
               
26-279
               

               
Cow position:
               
chr5:36855083-36855343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
75, 257
               

               
Conread position:
               
26-332
               

               
Cow position:
               
chr5:26097174-26097480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
74, 118
               

               
Conread position:
               
27-197
               

               
Cow position:
               
chr5:24485556-24485377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
74, 29
               

               
Conread position:
               
27-241
               

               
Cow position:
               
chr5:23140698-23140489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
34, 128
               

               
Conread position:
               
27-257
               

               
Cow position:
               
chr5:31481026-31481264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
27-274
               

               
Cow position:
               
chr5:21040096-21039850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
36, 125
               

               
Conread position:
               
27-279
               

               
Cow position:
               
chr5:4280341-4280586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
144, 46
               

               
Conread position:
               
27-279
               

               
Cow position:
               
chr5:35969422-35969670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 36
               

               
Conread position:
               
27-279
               

               
Cow position:
               
chr5:38833003-38833259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
76, 29
               

               
Conread position:
               
27-295
               

               
Cow position:
               
chr5:18898859-18899126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
74, 29
               

               
Conread position:
               
28-134
               

               
Cow position:
               
chr5:14415659-14415765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
28-175
               

               
Cow position:
               
chr5:30638978-30638829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
28-179
               

               
Cow position:
               
chr5:59443367-59443210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
76, 28
               

               
Conread position:
               
28-183
               

               
Cow position:
               
chr5:49821025-49821182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
35, 93
               

               
Conread position:
               
28-183
               

               
Cow position:
               
chr5:71579055-71579218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
28-184
               

               
Cow position:
               
chr5:7921519-7921361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
76, 28
               

               
Conread position:
               
28-184
               

               
Cow position:
               
chr5:16184968-16185131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
76, 36
               

               
Conread position:
               
28-187
               

               
Cow position:
               
chr5:7140230-7140060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
28-194
               

               
Cow position:
               
chr5:35235828-35235656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
76, 51
               

               
Conread position:
               
28-199
               

               
Cow position:
               
chr5:32956215-32956036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
73, 34
               

               
Conread position:
               
28-199
               

               
Cow position:
               
chr5:41531203-41531027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
28, 149
               

               
Conread position:
               
28-208
               

               
Cow position:
               
chr5:34885275-34885096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
33, 65
               

               
Conread position:
               
28-209
               

               
Cow position:
               
chr5:21964166-21964357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
28-210
               

               
Cow position:
               
chr5:58144723-58144533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
35, 170
               

               
Conread position:
               
28-212
               

               
Cow position:
               
chr5:75230561-75230738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
34, 92
               

               
Conread position:
               
28-214
               

               
Cow position:
               
chr5:12566847-12566668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
33, 52
               

               
Conread position:
               
28-218
               

               
Cow position:
               
chr5:18090604-18090816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
64, 189
               

               
Conread position:
               
28-221
               

               
Cow position:
               
chr5:28926303-28926100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
28-223
               

               
Cow position:
               
chr5:991347-991546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
107, 28
               

               
Conread position:
               
28-224
               

               
Cow position:
               
chr5:34638765-34638967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
81, 28
               

               
Conread position:
               
28-226
               

               
Cow position:
               
chr5:56820381-56820179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
73, 35
               

               
Conread position:
               
28-229
               

               
Cow position:
               
chr5:41951204-41951008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
95, 32
               

               
Conread position:
               
28-232
               

               
Cow position:
               
chr5:19335906-19335690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
28-232
               

               
Cow position:
               
chr5:27179543-27179748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
33, 128
               

               
Conread position:
               
28-232
               

               
Cow position:
               
chr5:33080908-33080701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
28-232
               

               
Cow position:
               
chr5:47704249-47704035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
32, 130
               

               
Conread position:
               
28-232
               

               
Cow position:
               
chr5:48829039-48829245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
33, 103
               

               
Conread position:
               
28-238
               

               
Cow position:
               
chr5:69520774-69520988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
70, 35
               

               
Conread position:
               
28-240
               

               
Cow position:
               
chr5:20407786-20407579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
81, 38
               

               
Conread position:
               
28-245
               

               
Cow position:
               
chr5:31918532-31918746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
28-249
               

               
Cow position:
               
chr5:36255379-36255149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
28, 68
               

               
Conread position:
               
28-255
               

               
Cow position:
               
chr5:46425970-46425744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
123, 28
               

               
Conread position:
               
28-257
               

               
Cow position:
               
chr5:55928823-55929060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
28-260
               

               
Cow position:
               
chr5:32696939-32696704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
70, 19
               

               
Conread position:
               
28-264
               

               
Cow position:
               
chr5:41129642-41129865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
28-265
               

               
Cow position:
               
chr5:24348988-24349231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
28-266
               

               
Cow position:
               
chr5:46509985-46509740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
81, 28
               

               
Conread position:
               
28-268
               

               
Cow position:
               
chr5:26377786-26377541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
28-268
               

               
Cow position:
               
chr5:57575650-57575900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
28-271
               

               
Cow position:
               
chr5:19813334-19813090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
109, 28
               

               
Conread position:
               
28-271
               

               
Cow position:
               
chr5:64321634-64321879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
56, 28
               

               
Conread position:
               
28-272
               

               
Cow position:
               
chr5:44848145-44847890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
48, 28
               

               
Conread position:
               
28-272
               

               
Cow position:
               
chr5:45803944-45804191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
56, 28
               

               
Conread position:
               
28-272
               

               
Cow position:
               
chr5:50821663-50821914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
81, 28
               

               
Conread position:
               
28-272
               

               
Cow position:
               
chr5:53835595-53835847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
69, 28
               

               
Conread position:
               
28-274
               

               
Cow position:
               
chr5:59115262-59115513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
56, 178
               

               
Conread position:
               
28-275
               

               
Cow position:
               
chr5:7755681-7755437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
123, 28
               

               
Conread position:
               
28-275
               

               
Cow position:
               
chr5:44752430-44752173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
113, 28
               

               
Conread position:
               
28-277
               

               
Cow position:
               
chr5:6572636-6572880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
69, 28
               

               
Conread position:
               
28-277
               

               
Cow position:
               
chr5:63987570-63987310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 195
               

               
Conread position:
               
28-278
               

               
Cow position:
               
chr5:5257411-5257151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
79, 25
               

               
Conread position:
               
28-278
               

               
Cow position:
               
chr5:20779505-20779261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 28
               

               
Conread position:
               
28-278
               

               
Cow position:
               
chr5:65967847-65967594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
110, 28
               

               
Conread position:
               
28-278
               

               
Cow position:
               
chr5:67932583-67932335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
81, 34
               

               
Conread position:
               
28-278
               

               
Cow position:
               
chr5:74858454-74858712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
62, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:59048-58795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
110, 197
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:1247157-1247401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
108, 36
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:1396497-1396737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:3204714-3204964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
38, 150
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:3582456-3582697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:4032113-4031848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:4347848-4347566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:4710264-4710014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
73, 22
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:5111192-5110931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
81, 15
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:6503999-6503743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
33, 66
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:7193312-7193554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
107, 27
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:8821127-8820875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
58, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:9090139-9089890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:11229788-11229535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
81, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:11427357-11427097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
25, 103
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:13537033-13537270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
107, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:14314406-14314666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:14629932-14629667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
81, 34
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:16938128-16937891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
26, 80
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:17087144-17086883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
58, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:18289010-18289260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
66, 151
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:20127937-20128191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
70, 15
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:21617339-21617596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
92, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:21828747-21829005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:24996342-24996085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:26477131-26476880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
114, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:28224333-28224590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 207
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:28302859-28302605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
32, 39
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:29771399-29771666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
64, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:30253622-30253879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:30276578-30276828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:30629277-30629019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
84, 34
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:30844994-30845246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:30950035-30949777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:34463704-34463442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
79, 229
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:34528442-34528684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
9, 29
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:35208147-35208399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:35247229-35246972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
73, 60
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:37646665-37646406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
68, 12
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:40109380-40109630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
114, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:43457635-43457393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
195, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:43858551-43858282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:43929855-43929598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
64, 22
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:44054153-44053917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:44726445-44726196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
106, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:44994157-44993911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:47317090-47316835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
79, 37
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:47601700-47601950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
110, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:47696561-47696312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:49440991-49440738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:50215675-50215426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
76, 108
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:50599937-50600186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
94, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:50943269-50943018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
81, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:51053767-51053511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
65, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:52165298-52165041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 200
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:53855575-53855844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
30, 235
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:54311213-54311474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:54350487-54350223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:54768029-54767771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 152
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:55068591-55068844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
58, 102
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:55176771-55177024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:56070737-56070997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
81, 38
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:56317179-56317427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:57419912-57419656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
23, 107
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:58519524-58519278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
32, 94
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:62638788-62639042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
64, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:64140411-64140676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
30, 67
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:65752737-65752997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
79, 246
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:65776501-65776246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
78, 37
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:66366399-66366653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
103, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:66972308-66972567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:69461215-69461473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr5:74643790-74643540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
81, 28
               

               
Conread position:
               
28-284
               

               
Cow position:
               
chr5:6045172-6045438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
77, 28
               

               
Conread position:
               
28-284
               

               
Cow position:
               
chr5:45273620-45273358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
79, 105
               

               
Conread position:
               
28-285
               

               
Cow position:
               
chr5:25231123-25230874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
67, 28
               

               
Conread position:
               
28-286
               

               
Cow position:
               
chr5:44028420-44028161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
56, 28
               

               
Conread position:
               
28-289
               

               
Cow position:
               
chr5:27306201-27306452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
86, 28
               

               
Conread position:
               
28-291
               

               
Cow position:
               
chr5:52000103-52000367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
28-293
               

               
Cow position:
               
chr5:34561893-34562169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
28-296
               

               
Cow position:
               
chr5:22643337-22643074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
16, 29
               

               
Conread position:
               
28-316
               

               
Cow position:
               
chr5:45397459-45397741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
114, 28
               

               
Conread position:
               
28-328
               

               
Cow position:
               
chr5:7723551-7723858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 83
               

               
Conread position:
               
28-328
               

               
Cow position:
               
chr5:39875004-39875319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
28-328
               

               
Cow position:
               
chr5:48009968-48009667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
244, 28
               

               
Conread position:
               
28-339
               

               
Cow position:
               
chr5:55756550-55756216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
30, 292
               

               
Conread position:
               
28-340
               

               
Cow position:
               
chr5:29903641-29903317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
32, 128
               

               
Conread position:
               
28-343
               

               
Cow position:
               
chr5:47871166-47870825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
31, 156
               

               
Conread position:
               
28-346
               

               
Cow position:
               
chr5:16025576-16025249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
77, 28
               

               
Conread position:
               
28-346
               

               
Cow position:
               
chr5:56680128-56680466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
28-346
               

               
Cow position:
               
chr5:57101895-57101565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
22, 73
               

               
Conread position:
               
28-349
               

               
Cow position:
               
chr5:6286543-6286229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
278, 28
               

               
Conread position:
               
28-349
               

               
Cow position:
               
chr5:65933049-65932749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
38, 118
               

               
Conread position:
               
28-350
               

               
Cow position:
               
chr5:6528563-6528897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
91, 75
               

               
Conread position:
               
28-350
               

               
Cow position:
               
chr5:57935228-57934882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
28-359
               

               
Cow position:
               
chr5:47547837-47547499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
79, 118
               

               
Conread position:
               
28-367
               

               
Cow position:
               
chr5:72951720-72952080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
16, 30
               

               
Conread position:
               
28-371
               

               
Cow position:
               
chr5:39695534-39695889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
56, 28
               

               
Conread position:
               
28-378
               

               
Cow position:
               
chr5:458363-458721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 124
               

               
Conread position:
               
29-207
               

               
Cow position:
               
chr5:29980101-29979916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
56, 27
               

               
Conread position:
               
29-218
               

               
Cow position:
               
chr5:21920253-21920457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
35, 182
               

               
Conread position:
               
29-232
               

               
Cow position:
               
chr5:5938206-5938413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
31, 104
               

               
Conread position:
               
29-232
               

               
Cow position:
               
chr5:26370578-26370774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
32, 65
               

               
Conread position:
               
29-232
               

               
Cow position:
               
chr5:65601342-65601548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
32, 102
               

               
Conread position:
               
29-257
               

               
Cow position:
               
chr5:65883894-65883656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
32, 106
               

               
Conread position:
               
29-259
               

               
Cow position:
               
chr5:52645197-52644962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
72, 33
               

               
Conread position:
               
29-267
               

               
Cow position:
               
chr5:16893890-16893645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
78, 33
               

               
Conread position:
               
29-268
               

               
Cow position:
               
chr5:64139448-64139687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
80, 27
               

               
Conread position:
               
29-271
               

               
Cow position:
               
chr5:12322919-12322677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
109, 27
               

               
Conread position:
               
29-271
               

               
Cow position:
               
chr5:57736992-57737229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
29-278
               

               
Cow position:
               
chr5:46512881-46512632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
117, 27
               

               
Conread position:
               
29-279
               

               
Cow position:
               
chr5:44446986-44446727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
63, 27
               

               
Conread position:
               
29-279
               

               
Cow position:
               
chr5:63427124-63426867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
67, 14
               

               
Conread position:
               
29-279
               

               
Cow position:
               
chr5:71494699-71494959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
29-280
               

               
Cow position:
               
chr5:19278818-19278568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
116, 27
               

               
Conread position:
               
29-282
               

               
Cow position:
               
chr5:65941368-65941110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
72, 34
               

               
Conread position:
               
29-295
               

               
Cow position:
               
chr5:56524057-56524331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
99, 27
               

               
Conread position:
               
29-327
               

               
Cow position:
               
chr5:16508977-16509290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
75, 229
               

               
Conread position:
               
29-328
               

               
Cow position:
               
chr5:48757828-48758135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
80, 27
               

               
Conread position:
               
29-329
               

               
Cow position:
               
chr5:62172298-62172613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
63, 27
               

               
Conread position:
               
29-332
               

               
Cow position:
               
chr5:27419840-27419530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
73, 33
               

               
Conread position:
               
29-346
               

               
Cow position:
               
chr5:34441909-34441565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
74, 27
               

               
Conread position:
               
29-361
               

               
Cow position:
               
chr5:46611214-46610870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
95, 25
               

               
Conread position:
               
30-279
               

               
Cow position:
               
chr5:14904193-14903930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
31-278
               

               
Cow position:
               
chr5:13717687-13717434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 107
               

               
Conread position:
               
32-168
               

               
Cow position:
               
chr5:17644771-17644627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
32-197
               

               
Cow position:
               
chr5:3004616-3004779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
56, 69
               

               
Conread position:
               
32-233
               

               
Cow position:
               
chr5:46122465-46122261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
75, 24
               

               
Conread position:
               
32-260
               

               
Cow position:
               
chr5:32673177-32672948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
74, 99
               

               
Conread position:
               
32-263
               

               
Cow position:
               
chr5:65588588-65588821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
75, 24
               

               
Conread position:
               
32-264
               

               
Cow position:
               
chr5:67540318-67540078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
77, 24
               

               
Conread position:
               
32-268
               

               
Cow position:
               
chr5:42744673-42744907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
77, 24
               

               
Conread position:
               
32-271
               

               
Cow position:
               
chr5:56518325-56518092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
32-272
               

               
Cow position:
               
chr5:7044822-7044574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
75, 24
               

               
Conread position:
               
32-277
               

               
Cow position:
               
chr5:17999610-17999360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
25, 106
               

               
Conread position:
               
32-277
               

               
Cow position:
               
chr5:58855988-58856238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 30
               

               
Conread position:
               
32-277
               

               
Cow position:
               
chr5:64027123-64026883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
32-278
               

               
Cow position:
               
chr5:6683470-6683230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
51, 24
               

               
Conread position:
               
32-278
               

               
Cow position:
               
chr5:25035358-25035121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
139, 24
               

               
Conread position:
               
32-278
               

               
Cow position:
               
chr5:29827934-29828183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 30
               

               
Conread position:
               
32-279
               

               
Cow position:
               
chr5:12901800-12902055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
32-279
               

               
Cow position:
               
chr5:18574055-18574311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
26, 44
               

               
Conread position:
               
32-279
               

               
Cow position:
               
chr5:22666978-22667209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
137, 24
               

               
Conread position:
               
32-279
               

               
Cow position:
               
chr5:35459409-35459155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
69, 24
               

               
Conread position:
               
32-279
               

               
Cow position:
               
chr5:55955794-55956050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
75, 22
               

               
Conread position:
               
32-279
               

               
Cow position:
               
chr5:55966994-55966745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
69, 24
               

               
Conread position:
               
32-279
               

               
Cow position:
               
chr5:56028642-56028403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
32-279
               

               
Cow position:
               
chr5:65887126-65886873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 104
               

               
Conread position:
               
32-280
               

               
Cow position:
               
chr5:23168940-23168687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
73, 24
               

               
Conread position:
               
32-292
               

               
Cow position:
               
chr5:27172095-27171844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
32-293
               

               
Cow position:
               
chr5:4220869-4221130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
69, 24
               

               
Conread position:
               
32-296
               

               
Cow position:
               
chr5:15722181-15721916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
77, 24
               

               
Conread position:
               
32-300
               

               
Cow position:
               
chr5:62142555-62142834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 257
               

               
Conread position:
               
32-301
               

               
Cow position:
               
chr5:20783509-20783781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
103, 24
               

               
Conread position:
               
32-310
               

               
Cow position:
               
chr5:3002802-3003075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
75, 10
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr5:66257524-66257818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
75, 24
               

               
Conread position:
               
32-332
               

               
Cow position:
               
chr5:30487121-30487445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
32-341
               

               
Cow position:
               
chr5:30302778-30303109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
77, 24
               

               
Conread position:
               
32-345
               

               
Cow position:
               
chr5:8024310-8023985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
72, 21
               

               
Conread position:
               
32-350
               

               
Cow position:
               
chr5:3668786-3669106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
104, 209
               

               
Conread position:
               
32-351
               

               
Cow position:
               
chr5:28927704-28927383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
69, 30
               

               
Conread position:
               
33-183
               

               
Cow position:
               
chr5:43395256-43395107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
30, 98
               

               
Conread position:
               
33-196
               

               
Cow position:
               
chr5:51801087-51800917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
33-262
               

               
Cow position:
               
chr5:58793728-58793486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
56, 23
               

               
Conread position:
               
33-271
               

               
Cow position:
               
chr5:15598347-15598108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
76, 23
               

               
Conread position:
               
33-278
               

               
Cow position:
               
chr5:59325950-59325705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
33, 11
               

               
Conread position:
               
33-279
               

               
Cow position:
               
chr5:3639606-3639359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
23, 126
               

               
Conread position:
               
33-279
               

               
Cow position:
               
chr5:6839189-6838942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
146, 66
               

               
Conread position:
               
33-279
               

               
Cow position:
               
chr5:11668300-11668047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 103
               

               
Conread position:
               
33-279
               

               
Cow position:
               
chr5:25495465-25495220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
64, 23
               

               
Conread position:
               
33-279
               

               
Cow position:
               
chr5:26262786-26262541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 21
               

               
Conread position:
               
33-279
               

               
Cow position:
               
chr5:33560848-33560596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
74, 105
               

               
Conread position:
               
33-279
               

               
Cow position:
               
chr5:38076597-38076345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
27, 80
               

               
Conread position:
               
33-279
               

               
Cow position:
               
chr5:45574501-45574758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
76, 23
               

               
Conread position:
               
33-279
               

               
Cow position:
               
chr5:49474659-49474406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
51, 23
               

               
Conread position:
               
33-279
               

               
Cow position:
               
chr5:53710808-53710551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
33-279
               

               
Cow position:
               
chr5:57327682-57327939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
71, 91
               

               
Conread position:
               
33-350
               

               
Cow position:
               
chr5:766719-767043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
59, 107
               

               
Conread position:
               
33-350
               

               
Cow position:
               
chr5:40039884-40039552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
59, 23
               

               
Conread position:
               
33-364
               

               
Cow position:
               
chr5:56467583-56467917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
30, 89
               

               
Conread position:
               
34-277
               

               
Cow position:
               
chr5:51935073-51935325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
23, 122
               

               
Conread position:
               
36-188
               

               
Cow position:
               
chr5:26790567-26790408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
36-200
               

               
Cow position:
               
chr5:23866274-23866112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
105, 27
               

               
Conread position:
               
36-232
               

               
Cow position:
               
chr5:19523786-19523991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
25, 98
               

               
Conread position:
               
36-232
               

               
Cow position:
               
chr5:52126664-52126862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
25, 86
               

               
Conread position:
               
36-232
               

               
Cow position:
               
chr5:59082303-59082103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
23, 96
               

               
Conread position:
               
36-232
               

               
Cow position:
               
chr5:61999653-61999467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
25, 76
               

               
Conread position:
               
36-235
               

               
Cow position:
               
chr5:29212833-29213032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
71, 29
               

               
Conread position:
               
36-240
               

               
Cow position:
               
chr5:38853252-38853448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
25, 91
               

               
Conread position:
               
36-242
               

               
Cow position:
               
chr5:64137140-64137357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
36-243
               

               
Cow position:
               
chr5:57561406-57561625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
36-272
               

               
Cow position:
               
chr5:34300805-34301047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
71, 20
               

               
Conread position:
               
36-278
               

               
Cow position:
               
chr5:39447641-39447395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
105, 20
               

               
Conread position:
               
36-278
               

               
Cow position:
               
chr5:71846035-71845782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
30, 184
               

               
Conread position:
               
36-279
               

               
Cow position:
               
chr5:7697894-7698138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
115, 20
               

               
Conread position:
               
36-279
               

               
Cow position:
               
chr5:9894240-9893985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
41, 27
               

               
Conread position:
               
36-279
               

               
Cow position:
               
chr5:32339075-32338828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
68, 20
               

               
Conread position:
               
36-279
               

               
Cow position:
               
chr5:42064087-42064343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
36-279
               

               
Cow position:
               
chr5:64176228-64175988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
36-280
               

               
Cow position:
               
chr5:58446692-58446946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 20
               

               
Conread position:
               
36-283
               

               
Cow position:
               
chr5:42050440-42050695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
69, 20
               

               
Conread position:
               
36-284
               

               
Cow position:
               
chr5:60016056-60016308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
65, 20
               

               
Conread position:
               
36-340
               

               
Cow position:
               
chr5:17027986-17028303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
48, 20
               

               
Conread position:
               
36-350
               

               
Cow position:
               
chr5:15363783-15364108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
98, 20
               

               
Conread position:
               
37-166
               

               
Cow position:
               
chr5:50950444-50950579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
55, 19
               

               
Conread position:
               
37-188
               

               
Cow position:
               
chr5:60448105-60448263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
67, 105
               

               
Conread position:
               
37-273
               

               
Cow position:
               
chr5:39299421-39299662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
37-279
               

               
Cow position:
               
chr5:23678814-23678565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 180
               

               
Conread position:
               
37-279
               

               
Cow position:
               
chr5:29353238-29352989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
99, 19
               

               
Conread position:
               
37-279
               

               
Cow position:
               
chr5:51151469-51151219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
27, 118
               

               
Conread position:
               
37-279
               

               
Cow position:
               
chr5:60183691-60183943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
70, 19
               

               
Conread position:
               
38-237
               

               
Cow position:
               
chr5:741049-740844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
69, 18
               

               
Conread position:
               
38-272
               

               
Cow position:
               
chr5:14921039-14920799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
66, 18
               

               
Conread position:
               
38-273
               

               
Cow position:
               
chr5:63647584-63647347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 16
               

               
Conread position:
               
38-279
               

               
Cow position:
               
chr5:26990283-26990526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
66, 18
               

               
Conread position:
               
38-279
               

               
Cow position:
               
chr5:35125945-35126193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
69, 9
               

               
Conread position:
               
38-279
               

               
Cow position:
               
chr5:54048460-54048214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
65, 218
               

               
Conread position:
               
38-279
               

               
Cow position:
               
chr5:54060167-54060414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
69, 152
               

               
Conread position:
               
38-350
               

               
Cow position:
               
chr5:71454704-71454395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
238, 18
               

               
Conread position:
               
39-219
               

               
Cow position:
               
chr5:32140816-32140630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
55, 23
               

               
Conread position:
               
39-232
               

               
Cow position:
               
chr5:33414520-33414320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
22, 184
               

               
Conread position:
               
39-244
               

               
Cow position:
               
chr5:30178618-30178401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
22, 87
               

               
Conread position:
               
39-277
               

               
Cow position:
               
chr5:14550690-14550448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
68, 97
               

               
Conread position:
               
39-279
               

               
Cow position:
               
chr5:360052-359801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
39-279
               

               
Cow position:
               
chr5:34887303-34887057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
68, 210
               

               
Conread position:
               
39-279
               

               
Cow position:
               
chr5:37377760-37377991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
70, 25
               

               
Conread position:
               
39-325
               

               
Cow position:
               
chr5:63964277-63963981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
22, 95
               

               
Conread position:
               
39-351
               

               
Cow position:
               
chr5:54089934-54090245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
85, 17
               

               
Conread position:
               
40-232
               

               
Cow position:
               
chr5:43371305-43371104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 144
               

               
Conread position:
               
40-240
               

               
Cow position:
               
chr5:3281728-3281934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
17, 74
               

               
Conread position:
               
40-261
               

               
Cow position:
               
chr5:56635793-56636015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
61, 109
               

               
Conread position:
               
40-278
               

               
Cow position:
               
chr5:2309667-2309421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
22, 233
               

               
Conread position:
               
40-279
               

               
Cow position:
               
chr5:57768090-57767849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
49, 106
               

               
Conread position:
               
41-279
               

               
Cow position:
               
chr5:35229235-35229006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
107, 21
               

               
Conread position:
               
42-277
               

               
Cow position:
               
chr5:64523972-64523727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
66, 14
               

               
Conread position:
               
43-181
               

               
Cow position:
               
chr5:56469930-56469782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
43-230
               

               
Cow position:
               
chr5:34192794-34192996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
20, 189
               

               
Conread position:
               
43-235
               

               
Cow position:
               
chr5:33552514-33552329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
65, 19
               

               
Conread position:
               
43-272
               

               
Cow position:
               
chr5:64758876-64758636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
43-278
               

               
Cow position:
               
chr5:53946791-53947034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
58, 13
               

               
Conread position:
               
43-279
               

               
Cow position:
               
chr5:12557396-12557149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
64, 13
               

               
Conread position:
               
43-279
               

               
Cow position:
               
chr5:12761222-12760983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
23, 90
               

               
Conread position:
               
43-279
               

               
Cow position:
               
chr5:17063194-17062943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
64, 13
               

               
Conread position:
               
43-279
               

               
Cow position:
               
chr5:44796836-44796595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
43-279
               

               
Cow position:
               
chr5:52667926-52668175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
49, 89
               

               
Conread position:
               
43-279
               

               
Cow position:
               
chr5:54375611-54375364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
64, 13
               

               
Conread position:
               
43-279
               

               
Cow position:
               
chr5:58490613-58490867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
59, 231
               

               
Conread position:
               
43-279
               

               
Cow position:
               
chr5:73168106-73167873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
20, 26
               

               
Conread position:
               
43-306
               

               
Cow position:
               
chr5:50482970-50482693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
13, 101
               

               
Conread position:
               
44-279
               

               
Cow position:
               
chr5:36039107-36038863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
54, 12
               

               
Conread position:
               
44-279
               

               
Cow position:
               
chr5:60747381-60747143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
57, 12
               

               
Conread position:
               
44-298
               

               
Cow position:
               
chr5:35785079-35784834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
104, 56
               

               
Conread position:
               
46-279
               

               
Cow position:
               
chr5:41293979-41294219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
61, 126
               

               
Conread position:
               
47-279
               

               
Cow position:
               
chr5:69731407-69731638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
58, 9
               

               
Conread position:
               
48-279
               

               
Cow position:
               
chr5:55019194-55019430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
48-362
               

               
Cow position:
               
chr5:22242873-22242526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
53, 8
               

               
Conread position:
               
49-279
               

               
Cow position:
               
chr5:59384791-59384550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
8, 133
               

               
Conread position:
               
50-264
               

               
Cow position:
               
chr5:23357238-23357452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
50, 6
               

               
Conread position:
               
50-276
               

               
Cow position:
               
chr5:60715455-60715233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
59, 6
               

               
Conread position:
               
50-279
               

               
Cow position:
               
chr5:12866917-12866690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
42, 160
               

               
Conread position:
               
50-279
               

               
Cow position:
               
chr5:16939676-16939456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
59, 14
               

               
Conread position:
               
50-306
               

               
Cow position:
               
chr5:30232802-30233075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
41, 6
               

               
Conread position:
               
56-183
               

               
Cow position:
               
chr5:20345074-20345204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
48, 85
               

               
Conread position:
               
56-240
               

               
Cow position:
               
chr5:61840100-61840287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
48, 85
               

               
Conread position:
               
56-249
               

               
Cow position:
               
chr5:4617277-4617474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
36, 136
               

               
Conread position:
               
56-261
               

               
Cow position:
               
chr5:1087288-1087079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
52, 41
               

               
Conread position:
               
56-268
               

               
Cow position:
               
chr5:46129754-46129544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 42
               

               
Conread position:
               
56-278
               

               
Cow position:
               
chr5:46023150-46022927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
10, 42
               

               
Conread position:
               
56-278
               

               
Cow position:
               
chr5:71015972-71015748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
132, 83
               

               
Conread position:
               
56-279
               

               
Cow position:
               
chr5:5855776-5855996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
30, 37
               

               
Conread position:
               
56-279
               

               
Cow position:
               
chr5:15479034-15479263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
36, 197
               

               
Conread position:
               
56-279
               

               
Cow position:
               
chr5:26094254-26094028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
56-279
               

               
Cow position:
               
chr5:49685362-49685139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
51, 188
               

               
Conread position:
               
56-279
               

               
Cow position:
               
chr5:54086451-54086676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
43, 80
               

               
Conread position:
               
56-279
               

               
Cow position:
               
chr5:63234921-63234691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
21, 136
               

               
Conread position:
               
56-357
               

               
Cow position:
               
chr5:50575693-50576012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 80
               

               
Conread position:
               
57-306
               

               
Cow position:
               
chr5:33833953-33834205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
46, 94
               

               
Conread position:
               
58-279
               

               
Cow position:
               
chr5:47323375-47323600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
34, 87
               

               
Conread position:
               
58-279
               

               
Cow position:
               
chr5:59873181-59872942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
58-348
               

               
Cow position:
               
chr5:30805077-30805382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
19, 153
               

               
Conread position:
               
58-369
               

               
Cow position:
               
chr5:23529369-23529048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
49, 7
               

               
Conread position:
               
59-274
               

               
Cow position:
               
chr5:61914481-61914698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
48, 75
               

               
Conread position:
               
59-277
               

               
Cow position:
               
chr5:57527007-57526793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
48, 86
               

               
Conread position:
               
60-279
               

               
Cow position:
               
chr5:43402812-43403041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
47, 213
               

               
Conread position:
               
60-370
               

               
Cow position:
               
chr5:31660739-31660420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
24, 89
               

               
Conread position:
               
62-284
               

               
Cow position:
               
chr5:1165088-1165308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
39, 114
               

               
Conread position:
               
64-343
               

               
Cow position:
               
chr5:42782801-42782517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
43, 83
               

               
Conread position:
               
65-278
               

               
Cow position:
               
chr5:32394518-32394735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
42, 59
               

               
Conread position:
               
65-279
               

               
Cow position:
               
chr5:41981290-41981506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
9, 139
               

               
Conread position:
               
65-279
               

               
Cow position:
               
chr5:50713854-50713618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
65-328
               

               
Cow position:
               
chr5:37757909-37757651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
42, 56
               

               
Conread position:
               
65-340
               

               
Cow position:
               
chr5:34624879-34625175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
65-343
               

               
Cow position:
               
chr5:29515573-29515295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
59, 126
               

               
Conread position:
               
66-290
               

               
Cow position:
               
chr5:29061001-29060787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
27, 76
               

               
Conread position:
               
69-279
               

               
Cow position:
               
chr5:19752226-19752440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
38, 137
               

               
Conread position:
               
70-279
               

               
Cow position:
               
chr5:61492019-61492231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
27, 80
               

               
Conread position:
               
71-318
               

               
Cow position:
               
chr5:57756108-57755855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
36, 110
               

               
Conread position:
               
81-295
               

               
Cow position:
               
chr5:38717255-38717464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
196, 35
               

               
Conread position:
               
85-272
               

               
Cow position:
               
chr5:63627582-63627404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
63, 30
               

               
Conread position:
               
97-243
               

               
Cow position:
               
chr5:45148408-45148268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
100-279
               

               
Cow position:
               
chr5:17602243-17602067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
42, 32
               

               
Conread position:
               
100-279
               

               
Cow position:
               
chr5:49342091-49341911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
37, 14
               

               
Conread position:
               
100-279
               

               
Cow position:
               
chr5:57101568-57101386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
42, 100
               

               
Conread position:
               
100-279
               

               
Cow position:
               
chr5:59627016-59626834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
35, 158
               

               
Conread position:
               
100-284
               

               
Cow position:
               
chr5:58555092-58555281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
101-279
               

               
Cow position:
               
chr5:57156355-57156175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
47, 29
               

               
Conread position:
               
101-279
               

               
Cow position:
               
chr5:67212315-67212498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
36, 168
               

               
Conread position:
               
101-317
               

               
Cow position:
               
chr5:61784769-61784550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
41, 150
               

               
Conread position:
               
103-268
               

               
Cow position:
               
chr5:22445875-22446038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
129, 35
               

               
Conread position:
               
103-268
               

               
Cow position:
               
chr5:26150460-26150294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
44, 101
               

               
Conread position:
               
103-279
               

               
Cow position:
               
chr5:2851549-2851728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
35, 100
               

               
Conread position:
               
103-279
               

               
Cow position:
               
chr5:11769230-11769407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
39, 97
               

               
Conread position:
               
103-279
               

               
Cow position:
               
chr5:35982780-35982599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
103-279
               

               
Cow position:
               
chr5:43604104-43604275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
103-279
               

               
Cow position:
               
chr5:45420173-45419999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
103-279
               

               
Cow position:
               
chr5:56339059-56338883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
34, 43
               

               
Conread position:
               
103-279
               

               
Cow position:
               
chr5:57994906-57994740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
103-279
               

               
Cow position:
               
chr5:61455806-61455982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
33, 97
               

               
Conread position:
               
103-279
               

               
Cow position:
               
chr5:68537706-68537530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
40, 10
               

               
Conread position:
               
103-279
               

               
Cow position:
               
chr5:76366333-76366157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
44, 24
               

               
Conread position:
               
103-283
               

               
Cow position:
               
chr5:40559598-40559776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
27, 42
               

               
Conread position:
               
103-287
               

               
Cow position:
               
chr5:56517063-56517250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
31, 108
               

               
Conread position:
               
103-295
               

               
Cow position:
               
chr5:56153575-56153768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
40, 95
               

               
Conread position:
               
103-295
               

               
Cow position:
               
chr5:63831888-63832085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
103-311
               

               
Cow position:
               
chr5:55796004-55795800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
106, 22
               

               
Conread position:
               
103-317
               

               
Cow position:
               
chr5:20843439-20843222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
25, 177
               

               
Conread position:
               
103-342
               

               
Cow position:
               
chr5:40237174-40237417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
34, 59
               

               
Conread position:
               
103-348
               

               
Cow position:
               
chr5:28035702-28035959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
38, 113
               

               
Conread position:
               
104-272
               

               
Cow position:
               
chr5:6444189-6444024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
104-279
               

               
Cow position:
               
chr5:15470894-15471067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
34, 60
               

               
Conread position:
               
104-279
               

               
Cow position:
               
chr5:49501863-49501686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
105-270
               

               
Cow position:
               
chr5:453522-453686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
105-276
               

               
Cow position:
               
chr5:50101415-50101239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
105-279
               

               
Cow position:
               
chr5:20995132-20994948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
105-279
               

               
Cow position:
               
chr5:30247557-30247389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
105-279
               

               
Cow position:
               
chr5:36838920-36839097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
32, 162
               

               
Conread position:
               
105-279
               

               
Cow position:
               
chr5:46322834-46322665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
43, 11
               

               
Conread position:
               
105-329
               

               
Cow position:
               
chr5:1461050-1461268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
30, 191
               

               
Conread position:
               
106-279
               

               
Cow position:
               
chr5:57686777-57686599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
109-295
               

               
Cow position:
               
chr5:33273657-33273847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
27, 107
               

               
Conread position:
               
110-268
               

               
Cow position:
               
chr5:60188957-60189120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
111-279
               

               
Cow position:
               
chr5:9369298-9369133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
113-279
               

               
Cow position:
               
chr5:52108296-52108131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
119-279
               

               
Cow position:
               
chr5:57230363-57230200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
119-279
               

               
Cow position:
               
chr5:61875519-61875675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
33, 44
               

               
Conread position:
               
120-260
               

               
Cow position:
               
chr5:62415986-62415842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
120-279
               

               
Cow position:
               
chr5:56287524-56287364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
18, 25
               

               
Conread position:
               
123-243
               

               
Cow position:
               
chr5:46672186-46672307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
123-271
               

               
Cow position:
               
chr5:45574384-45574235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
125-279
               

               
Cow position:
               
chr5:2827358-2827511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
125-279
               

               
Cow position:
               
chr5:50871793-50871955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
125-381
               

               
Cow position:
               
chr5:23527648-23527377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
127-350
               

               
Cow position:
               
chr5:34914565-34914337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
150, 21
               

               
Conread position:
               
131-279
               

               
Cow position:
               
chr5:69383243-69383392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
17, 137
               

               
Conread position:
               
132-279
               

               
Cow position:
               
chr5:60908658-60908802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
135-272
               

               
Cow position:
               
chr5:43844668-43844532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
135-279
               

               
Cow position:
               
chr5:24946235-24946378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
72, 10
               

               
Conread position:
               
135-279
               

               
Cow position:
               
chr5:57150657-57150805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
135-378
               

               
Cow position:
               
chr5:52852966-52853205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
203, 10
               

               
Conread position:
               
136-274
               

               
Cow position:
               
chr5:48867471-48867331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
136-279
               

               
Cow position:
               
chr5:18062323-18062181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
137-278
               

               
Cow position:
               
chr5:56613567-56613426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
133, 7
               

               
Conread position:
               
137-279
               

               
Cow position:
               
chr5:27293889-27293746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
137-279
               

               
Cow position:
               
chr5:51490250-51490110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
5, 33
               

               
Conread position:
               
137-279
               

               
Cow position:
               
chr5:56361792-56361931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
138-279
               

               
Cow position:
               
chr5:55129339-55129481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
139-272
               

               
Cow position:
               
chr5:63656474-63656607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 33
               

               
Conread position:
               
139-278
               

               
Cow position:
               
chr5:65679974-65679836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
11, 67
               

               
Conread position:
               
143-279
               

               
Cow position:
               
chr5:5016430-5016563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
7, 53
               

               
Conread position:
               
146-347
               

               
Cow position:
               
chr5:26497672-26497454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
147-272
               

               
Cow position:
               
chr5:57062523-57062395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
147-279
               

               
Cow position:
               
chr5:2469201-2469074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
147-279
               

               
Cow position:
               
chr5:11562717-11562584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
54, 48
               

               
Conread position:
               
147-279
               

               
Cow position:
               
chr5:17566432-17566301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
147-279
               

               
Cow position:
               
chr5:59627106-59627238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
147-279
               

               
Cow position:
               
chr5:67634511-67634376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
147-300
               

               
Cow position:
               
chr5:44163363-44163207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
147-391
               

               
Cow position:
               
chr5:6520017-6520278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
58, 204
               

               
Conread position:
               
148-279
               

               
Cow position:
               
chr5:26723455-26723585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
148-279
               

               
Cow position:
               
chr5:57489938-57489812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
148-279
               

               
Cow position:
               
chr5:60948140-60948270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
148-284
               

               
Cow position:
               
chr5:4267677-4267813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
150-279
               

               
Cow position:
               
chr5:2240980-2240853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
150-279
               

               
Cow position:
               
chr5:34915044-34914915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
151-279
               

               
Cow position:
               
chr5:3743332-3743458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
154-279
               

               
Cow position:
               
chr5:12738542-12738421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
156-279
               

               
Cow position:
               
chr5:7177166-7177289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
159-279
               

               
Cow position:
               
chr5:54312619-54312739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
160-279
               

               
Cow position:
               
chr5:54436775-54436891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
162-279
               

               
Cow position:
               
chr5:38040543-38040426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
164-279
               

               
Cow position:
               
chr5:4864567-4864680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
169-279
               

               
Cow position:
               
chr5:51125981-51125871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
170-279
               

               
Cow position:
               
chr5:64843942-64843833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
171-345
               

               
Cow position:
               
chr5:30638549-30638372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
47, 111
               

               
Conread position:
               
172-279
               

               
Cow position:
               
chr5:694895-695000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
101, 34
               

               
Conread position:
               
172-279
               

               
Cow position:
               
chr5:16668728-16668835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
172-279
               

               
Cow position:
               
chr5:20882595-20882486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
172-279
               

               
Cow position:
               
chr5:36822918-36823021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
172-279
               

               
Cow position:
               
chr5:42623148-42623042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
172-279
               

               
Cow position:
               
chr5:44734694-44734587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
172-279
               

               
Cow position:
               
chr5:49821459-49821566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
172-279
               

               
Cow position:
               
chr5:51490571-51490464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
172-279
               

               
Cow position:
               
chr5:70353953-70353845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
172-323
               

               
Cow position:
               
chr5:54099821-54099968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
77, 72
               

               
Conread position:
               
182-280
               

               
Cow position:
               
chr5:51277812-51277714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
184-277
               

               
Cow position:
               
chr5:29979915-29979822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
94
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.