Cow genome map

Conread name: Ss1.1-Ova1-OVRM10135F12.5

Conread position: 28-487
Cow position: chr10:38849148-38849609 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 316
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 61, 19

Conread position: 49-483
Cow position: chr10:40397882-40398310 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 285
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 10, 57

Conread position: 68-468
Cow position: chr10:41567983-41568396 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 175

Conread position: 68-483
Cow position: chr10:44708732-44708300 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 175

Conread position: 69-244
Cow position: chr10:20290953-20290775 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 138
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 54, 174

Conread position: 69-248
Cow position: chr10:21730963-21730781 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 139
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 54, 110

Conread position: 69-255
Cow position: chr10:7274656-7274845 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 145
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 54, 174

Conread position: 69-280
Cow position: chr10:11699128-11699343 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 166
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 54, 174

Conread position: 69-289
Cow position: chr10:47083884-47083660 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 164
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 43, 174

Conread position: 69-360
Cow position: chr10:34286142-34286438 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 209
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 54, 174

Conread position: 69-469
Cow position: chr10:28642418-28642833 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 173

Conread position: 69-481
Cow position: chr10:11821633-11822049 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 120

Conread position: 69-483
Cow position: chr10:27664380-27663955 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 174

Conread position: 69-483
Cow position: chr10:57556455-57556024 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 174

Conread position: 71-473
Cow position: chr10:20370192-20369772 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 117

Conread position: 72-239
Cow position: chr10:62407956-62407786 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 130
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 55, 0

Conread position: 72-280
Cow position: chr10:125280-125491 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 159
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 55, 0

Conread position: 72-306
Cow position: chr10:26597502-26597736 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 216

Conread position: 72-363
Cow position: chr10:8290866-8291164 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 171

Conread position: 72-365
Cow position: chr10:21487809-21488105 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 211
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 60, 41

Conread position: 72-431
Cow position: chr10:28929069-28928704 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 252
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 201, 53

Conread position: 72-468
Cow position: chr10:14334961-14334550 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 172

Conread position: 72-468
Cow position: chr10:29110253-29109847 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 62

Conread position: 72-468
Cow position: chr10:40461966-40462360 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 265
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 42, 68

Conread position: 72-471
Cow position: chr10:1378394-1378798 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 227

Conread position: 72-471
Cow position: chr10:16926422-16926831 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 85

Conread position: 72-471
Cow position: chr10:22102125-22102535 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 162

Conread position: 72-471
Cow position: chr10:29845760-29845347 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 172

Conread position: 72-471
Cow position: chr10:30684625-30684194 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 164

Conread position: 72-471
Cow position: chr10:38344472-38344061 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 164

Conread position: 72-471
Cow position: chr10:38537609-38537198 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 61

Conread position: 72-471
Cow position: chr10:39040420-39039997 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 172

Conread position: 72-471
Cow position: chr10:57989103-57988696 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 53

Conread position: 72-479
Cow position: chr10:7281200-7280794 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 61

Conread position: 72-483
Cow position: chr10:24311478-24311049 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 280
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 45, 17

Conread position: 72-483
Cow position: chr10:38545023-38544614 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 53

Conread position: 72-491
Cow position: chr10:50135449-50135895 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 148

Conread position: 73-467
Cow position: chr10:1665646-1665237 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 170

Conread position: 73-467
Cow position: chr10:39180678-39181090 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 138

Conread position: 73-468
Cow position: chr10:279719-279312 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 171

Conread position: 73-468
Cow position: chr10:41877805-41878218 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 171

Conread position: 73-468
Cow position: chr10:47907819-47908229 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 170

Conread position: 73-483
Cow position: chr10:21739861-21739436 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 170

Conread position: 73-487
Cow position: chr10:19495391-19494970 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 169

Conread position: 73-487
Cow position: chr10:19840569-19840998 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 170

Conread position: 73-487
Cow position: chr10:21399783-21399364 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 170

Conread position: 73-487
Cow position: chr10:41158330-41158762 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 179

Conread position: 73-490
Cow position: chr10:11684757-11684309 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 171

Conread position: 74-471
Cow position: chr10:21883680-21884088 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 264
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 43, 169

Conread position: 76-238
Cow position: chr10:4190921-4190756 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 48, 135

Conread position: 76-442
Cow position: chr10:3542175-3541803 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 252
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 45, 165

Conread position: 76-468
Cow position: chr10:55094158-55094565 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 167

Conread position: 76-471
Cow position: chr10:66899474-66899080 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 269
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 47, 9

Conread position: 76-487
Cow position: chr10:14804726-14805165 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 176

Conread position: 76-487
Cow position: chr10:39779229-39778796 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 199

Conread position: 76-491
Cow position: chr10:40151354-40150933 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 226

Conread position: 77-272
Cow position: chr10:39815646-39815447 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 149
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 46, 167

Conread position: 77-471
Cow position: chr10:2120120-2119715 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 166

Conread position: 77-471
Cow position: chr10:19512486-19512879 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 154

Conread position: 77-471
Cow position: chr10:32701621-32702026 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 143

Conread position: 77-489
Cow position: chr10:42749723-42750136 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 272
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 13, 52

Conread position: 78-483
Cow position: chr10:57501713-57502121 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 114

Conread position: 78-489
Cow position: chr10:42111319-42111737 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 281
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 43, 134

Conread position: 88-474
Cow position: chr10:14842684-14843085 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 277
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 15, 119

Conread position: 88-492
Cow position: chr10:17433249-17433676 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 161

Conread position: 92-468
Cow position: chr10:8326409-8326037 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 273
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 140, 148

Conread position: 93-483
Cow position: chr10:42752039-42752450 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 150

Conread position: 97-480
Cow position: chr10:29723141-29722740 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 276
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 24, 144

Conread position: 97-487
Cow position: chr10:58097104-58096709 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 276
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 24, 194

Conread position: 99-471
Cow position: chr10:21480851-21481232 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 269
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 22, 52

Conread position: 103-491
Cow position: chr10:64145849-64146253 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 272
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 15, 109

Conread position: 107-492
Cow position: chr10:58597304-58597691 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 270
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 20, 66

Conread position: 114-471
Cow position: chr10:51844262-51843895 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 118

Conread position: 114-491
Cow position: chr10:21078577-21078944 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 251
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 205, 100

Conread position: 115-487
Cow position: chr10:9945343-9944968 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 244
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 162, 106

Conread position: 119-384
Cow position: chr10:21899264-21898997 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 184
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 202, 119

Conread position: 122-487
Cow position: chr10:24976828-24976460 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 262
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 53, 60

Conread position: 127-479
Cow position: chr10:187042-187400 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 227
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 144, 110

Conread position: 144-487
Cow position: chr10:28256454-28256097 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 96

Conread position: 152-308
Cow position: chr10:39439327-39439477 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 80, 15

Conread position: 169-483
Cow position: chr10:31471748-31472071 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 225
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 102, 223

Conread position: 175-483
Cow position: chr10:6240-6541 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 229
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 55, 65

Conread position: 178-487
Cow position: chr10:60360890-60361216 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 238
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 120, 16

Conread position: 188-483
Cow position: chr10:22576118-22575824 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 203
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 89, 19

Conread position: 193-483
Cow position: chr10:53321380-53321081 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 208
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 51, 35

Conread position: 199-483
Cow position: chr10:20375813-20375520 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 221
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 77, 9

Conread position: 200-483
Cow position: chr10:51782393-51782103 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 206
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 77, 88

Conread position: 204-483
Cow position: chr10:40640982-40641273 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 208
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 28, 37

Conread position: 206-484
Cow position: chr10:32429753-32430043 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 199
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 66, 34

Conread position: 214-471
Cow position: chr10:36469416-36469154 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 189
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 107, 57

Conread position: 234-471
Cow position: chr10:62407728-62407479 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 181
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 47, 6

Conread position: 274-491
Cow position: chr10:46192157-46192388 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 163
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 56, 38

Conread position: 307-483
Cow position: chr10:29631663-29631487 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 26, 5

Conread position: 348-471
Cow position: chr10:8291110-8291235 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 357-479
Cow position: chr10:21488148-21488273 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 30, 0

Show alignments to all cow chromosomes.