Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10135F12.5 |
| Conread position: | 69-361 |
| Cow position: | chr12:41380490-41380787 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 213 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 54, 174 |
| Conread position: | 69-468 |
| Cow position: | chr12:21387433-21387020 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 174 |
| Conread position: | 69-483 |
| Cow position: | chr12:21942548-21942980 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 94 |
| Conread position: | 72-257 |
| Cow position: | chr12:36479981-36480156 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 163, 89 |
| Conread position: | 72-313 |
| Cow position: | chr12:25554563-25554322 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 49, 16 |
| Conread position: | 72-316 |
| Cow position: | chr12:11580562-11580802 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 180 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 72-319 |
| Cow position: | chr12:35313860-35313617 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 51, 82 |
| Conread position: | 72-361 |
| Cow position: | chr12:22204930-22204636 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 55, 164 |
| Conread position: | 72-385 |
| Cow position: | chr12:14661816-14661489 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 243 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 55, 171 |
| Conread position: | 72-467 |
| Cow position: | chr12:36337603-36337998 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 289 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 54, 92 |
| Conread position: | 72-467 |
| Cow position: | chr12:36367648-36368052 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 92 |
| Conread position: | 72-467 |
| Cow position: | chr12:36449390-36449787 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 28 |
| Conread position: | 72-468 |
| Cow position: | chr12:6405830-6405419 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 164 |
| Conread position: | 72-471 |
| Cow position: | chr12:20997283-20996856 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 50, 178 |
| Conread position: | 72-471 |
| Cow position: | chr12:25262654-25262240 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 164 |
| Conread position: | 72-471 |
| Cow position: | chr12:27932093-27931678 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 167 |
| Conread position: | 72-471 |
| Cow position: | chr12:42858723-42858311 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 172 |
| Conread position: | 72-474 |
| Cow position: | chr12:1403306-1403721 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 171 |
| Conread position: | 72-483 |
| Cow position: | chr12:3361739-3362179 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 296 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 51, 171 |
| Conread position: | 72-484 |
| Cow position: | chr12:11871089-11871510 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 278 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 55, 121 |
| Conread position: | 73-238 |
| Cow position: | chr12:21253899-21253729 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 73-394 |
| Cow position: | chr12:21209467-21209795 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 230 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 50, 120 |
| Conread position: | 73-468 |
| Cow position: | chr12:32654352-32654770 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 67 |
| Conread position: | 73-483 |
| Cow position: | chr12:43030573-43030143 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 172 |
| Conread position: | 73-487 |
| Cow position: | chr12:21428673-21429105 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 293 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 41, 176 |
| Conread position: | 76-468 |
| Cow position: | chr12:37559808-37560232 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 288 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 46, 278 |
| Conread position: | 77-471 |
| Cow position: | chr12:600538-600140 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 56 |
| Conread position: | 77-471 |
| Cow position: | chr12:8677281-8676873 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 143 |
| Conread position: | 77-471 |
| Cow position: | chr12:11099053-11099448 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 166 |
| Conread position: | 79-471 |
| Cow position: | chr12:27855145-27854738 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 164 |
| Conread position: | 80-319 |
| Cow position: | chr12:1888693-1888449 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 44, 164 |
| Conread position: | 82-385 |
| Cow position: | chr12:21198785-21199096 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 226 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 37, 18 |
| Conread position: | 88-290 |
| Cow position: | chr12:1777473-1777266 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 33, 16 |
| Conread position: | 92-470 |
| Cow position: | chr12:12292805-12293182 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 29, 62 |
| Conread position: | 106-483 |
| Cow position: | chr12:35345409-35345788 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 31 |
| Conread position: | 114-491 |
| Cow position: | chr12:17979591-17979969 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 9, 128 |
| Conread position: | 117-464 |
| Cow position: | chr12:28004797-28005123 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 204, 50 |
| Conread position: | 122-483 |
| Cow position: | chr12:32063971-32064330 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 110, 48 |
| Conread position: | 154-467 |
| Cow position: | chr12:23141298-23140971 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 232 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 78, 86 |
| Conread position: | 159-432 |
| Cow position: | chr12:32678033-32677761 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 73, 80 |
| Conread position: | 159-474 |
| Cow position: | chr12:18464871-18465177 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 164, 62 |
| Conread position: | 178-487 |
| Cow position: | chr12:21128064-21128370 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 54, 20 |
| Conread position: | 181-491 |
| Cow position: | chr12:23162003-23161682 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 55, 60 |
| Conread position: | 184-471 |
| Cow position: | chr12:25100146-25099847 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 218 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 55, 49 |
| Conread position: | 253-468 |
| Cow position: | chr12:21253617-21253390 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 260-479 |
| Cow position: | chr12:5144689-5144923 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 28, 37 |
| Conread position: | 261-483 |
| Cow position: | chr12:48471872-48471641 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 60, 26 |
| Conread position: | 345-485 |
| Cow position: | chr12:11580910-11581055 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 354-484 |
| Cow position: | chr12:20843724-20843857 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 32, 0 |
Show alignments to all cow chromosomes.