Cow genome map

Conread name: Ss1.1-Ova1-OVRM10135F12.5

Conread position: 31-471
Cow position: chr13:35757825-35758289 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 16

Conread position: 49-483
Cow position: chr13:5625436-5624967 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 12

Conread position: 61-466
Cow position: chr13:44653230-44652816 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 263
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 140, 215

Conread position: 69-269
Cow position: chr13:30238829-30239030 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 158
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 54, 14

Conread position: 69-279
Cow position: chr13:58118319-58118107 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 161
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 54, 206

Conread position: 69-360
Cow position: chr13:52646285-52645989 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 208
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 54, 174

Conread position: 69-423
Cow position: chr13:60700076-60699707 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 252
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 57, 229

Conread position: 69-426
Cow position: chr13:34424352-34424724 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 258
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 54, 174

Conread position: 69-465
Cow position: chr13:34049329-34049741 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 279
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 48, 116

Conread position: 69-471
Cow position: chr13:31556139-31555734 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 272
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 104, 56

Conread position: 69-483
Cow position: chr13:17309063-17309489 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 174

Conread position: 69-483
Cow position: chr13:60466919-60467347 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 18

Conread position: 69-487
Cow position: chr13:11798120-11797695 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 154

Conread position: 72-261
Cow position: chr13:34910272-34910083 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 141
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 49, 126

Conread position: 72-360
Cow position: chr13:3056542-3056249 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 202
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 51, 264

Conread position: 72-360
Cow position: chr13:28670669-28670378 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 194
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 46, 171

Conread position: 72-382
Cow position: chr13:19441162-19441474 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 212
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 27, 135

Conread position: 72-389
Cow position: chr13:20541450-20541134 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 240
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 43, 16

Conread position: 72-468
Cow position: chr13:9045371-9045770 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 48

Conread position: 72-468
Cow position: chr13:34041740-34041334 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 140

Conread position: 72-470
Cow position: chr13:12633162-12633551 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 273
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 49, 101

Conread position: 72-471
Cow position: chr13:1592558-1592147 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 262

Conread position: 72-471
Cow position: chr13:3653726-3653312 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 172

Conread position: 72-471
Cow position: chr13:4484391-4484796 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 61

Conread position: 72-471
Cow position: chr13:6667539-6667125 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 81

Conread position: 72-471
Cow position: chr13:15519913-15519514 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 173

Conread position: 72-471
Cow position: chr13:15543135-15543548 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 161

Conread position: 72-471
Cow position: chr13:15923786-15923375 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 172

Conread position: 72-471
Cow position: chr13:17331169-17330756 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 279
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 51, 98

Conread position: 72-471
Cow position: chr13:30303877-30304301 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 164

Conread position: 72-471
Cow position: chr13:31611713-31611303 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 174

Conread position: 72-471
Cow position: chr13:31730281-31729888 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 273
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 55, 157

Conread position: 72-478
Cow position: chr13:13900462-13900882 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 162

Conread position: 72-483
Cow position: chr13:16254790-16254365 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 41

Conread position: 72-483
Cow position: chr13:21696845-21697272 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 171

Conread position: 72-491
Cow position: chr13:57024292-57024721 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 284
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 50, 136

Conread position: 73-248
Cow position: chr13:677612-677789 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 130
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 51, 36

Conread position: 73-259
Cow position: chr13:30244086-30243898 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 145
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 50, 127

Conread position: 73-465
Cow position: chr13:47229410-47228999 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 170

Conread position: 73-468
Cow position: chr13:21839605-21839190 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 174

Conread position: 73-471
Cow position: chr13:2388220-2387801 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 170

Conread position: 73-483
Cow position: chr13:42218330-42217892 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 304
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 50, 185

Conread position: 73-483
Cow position: chr13:49974271-49974684 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 254

Conread position: 74-279
Cow position: chr13:34030006-34030214 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 155
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 26, 8

Conread position: 74-492
Cow position: chr13:15450531-15450091 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 154

Conread position: 75-487
Cow position: chr13:43982499-43982079 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 5

Conread position: 76-471
Cow position: chr13:14178240-14177836 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 279
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 46, 143

Conread position: 76-483
Cow position: chr13:30278217-30278633 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 270
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 49, 102

Conread position: 76-490
Cow position: chr13:50110049-50110483 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 135

Conread position: 77-278
Cow position: chr13:33335717-33335511 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 160
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 50, 157

Conread position: 77-424
Cow position: chr13:26844627-26844969 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 132

Conread position: 77-468
Cow position: chr13:32737225-32736821 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 222

Conread position: 77-487
Cow position: chr13:32545979-32546418 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 167

Conread position: 78-485
Cow position: chr13:34324960-34324533 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 226

Conread position: 79-489
Cow position: chr13:25692285-25692702 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 283
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 42, 132

Conread position: 80-423
Cow position: chr13:30654779-30654420 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 166

Conread position: 88-468
Cow position: chr13:32984741-32984339 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 155

Conread position: 89-453
Cow position: chr13:34154150-34153769 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 154

Conread position: 89-484
Cow position: chr13:34938075-34938469 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 154

Conread position: 91-487
Cow position: chr13:5628195-5627809 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 263
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 151, 58

Conread position: 107-471
Cow position: chr13:4942017-4942390 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 49

Conread position: 133-297
Cow position: chr13:35031781-35031945 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 130
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 99, 107

Conread position: 133-468
Cow position: chr13:31733232-31732886 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 107

Conread position: 147-471
Cow position: chr13:14402426-14402090 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 149

Conread position: 147-488
Cow position: chr13:42202569-42202217 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 233
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 26, 11

Conread position: 150-491
Cow position: chr13:43590006-43590362 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 146

Conread position: 156-472
Cow position: chr13:57823988-57823681 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 213
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 7, 17

Conread position: 177-468
Cow position: chr13:13325622-13325932 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 221
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 55, 66

Conread position: 193-471
Cow position: chr13:31506352-31506623 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 190
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 121, 12

Conread position: 239-471
Cow position: chr13:23002248-23002001 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 182
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 49, 77

Conread position: 287-483
Cow position: chr13:48358455-48358661 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 149
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 34, 9

Conread position: 343-489
Cow position: chr13:50661180-50661327 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 110
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 44, 14

Show alignments to all cow chromosomes.