Cow genome map

Conread name: Ss1.1-Ova1-OVRM10135F12.5

Conread position: 6-483
Cow position: chr14:9514895-9514392 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 13

Conread position: 61-468
Cow position: chr14:9100262-9099842 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 276
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 60, 140

Conread position: 61-483
Cow position: chr14:40169256-40168837 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 71

Conread position: 67-483
Cow position: chr14:37413280-37412854 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 10

Conread position: 69-471
Cow position: chr14:751031-751447 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 174

Conread position: 69-483
Cow position: chr14:33393322-33392903 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 174

Conread position: 69-483
Cow position: chr14:45671582-45671152 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 174

Conread position: 69-490
Cow position: chr14:48601862-48601436 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 56

Conread position: 71-328
Cow position: chr14:48404498-48404244 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 170
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 250, 53

Conread position: 72-308
Cow position: chr14:13462056-13462289 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 180
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 101, 106

Conread position: 72-327
Cow position: chr14:29775749-29775489 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 231

Conread position: 72-327
Cow position: chr14:30735449-30735699 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 184
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 49, 67

Conread position: 72-394
Cow position: chr14:35385603-35385293 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 231
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 49, 71

Conread position: 72-468
Cow position: chr14:5529536-5529940 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 175

Conread position: 72-468
Cow position: chr14:32447264-32447670 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 60

Conread position: 72-468
Cow position: chr14:44378270-44378677 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 40

Conread position: 72-471
Cow position: chr14:5074436-5074836 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 128

Conread position: 72-471
Cow position: chr14:11153689-11153270 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 170

Conread position: 72-471
Cow position: chr14:11561563-11561143 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 399

Conread position: 72-471
Cow position: chr14:12742599-12742186 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 162

Conread position: 72-471
Cow position: chr14:16272828-16272412 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 172

Conread position: 72-471
Cow position: chr14:19327801-19327380 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 166

Conread position: 72-471
Cow position: chr14:20782930-20783337 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 168

Conread position: 72-471
Cow position: chr14:33677533-33677950 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 25

Conread position: 72-471
Cow position: chr14:37224659-37225073 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 171

Conread position: 72-471
Cow position: chr14:44226867-44227257 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 205

Conread position: 72-471
Cow position: chr14:48253843-48253432 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 171

Conread position: 72-471
Cow position: chr14:50111260-50111676 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 168

Conread position: 72-482
Cow position: chr14:17000591-17000165 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 227

Conread position: 72-483
Cow position: chr14:22030972-22030550 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 54

Conread position: 72-483
Cow position: chr14:35365790-35365374 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 289
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 51, 171

Conread position: 72-483
Cow position: chr14:44775569-44775144 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 80

Conread position: 72-484
Cow position: chr14:44689523-44689967 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 171

Conread position: 72-487
Cow position: chr14:40341519-40341955 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 247

Conread position: 72-489
Cow position: chr14:44581823-44582268 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 301
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 42, 65

Conread position: 72-491
Cow position: chr14:12610920-12611332 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 33

Conread position: 73-267
Cow position: chr14:16343680-16343482 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 144
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 48, 0

Conread position: 73-401
Cow position: chr14:23257823-23258168 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 249
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 51, 169

Conread position: 73-467
Cow position: chr14:9046044-9046455 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 170

Conread position: 73-468
Cow position: chr14:2284807-2285207 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 170

Conread position: 73-468
Cow position: chr14:27977830-27978239 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 170

Conread position: 73-468
Cow position: chr14:29047216-29046806 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 18

Conread position: 73-468
Cow position: chr14:46392063-46391652 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 138

Conread position: 73-471
Cow position: chr14:30584487-30584070 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 144

Conread position: 73-483
Cow position: chr14:17490990-17490564 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 170

Conread position: 73-483
Cow position: chr14:38530989-38530563 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 172

Conread position: 73-487
Cow position: chr14:2294743-2295191 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 310
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 49, 403

Conread position: 73-491
Cow position: chr14:44552355-44552755 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 290
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 159, 48

Conread position: 76-207
Cow position: chr14:45161566-45161697 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 110
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 76-252
Cow position: chr14:50393582-50393405 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 126
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 74, 49

Conread position: 76-271
Cow position: chr14:46465795-46465990 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 148
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 47, 11

Conread position: 76-280
Cow position: chr14:45189306-45189099 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 144
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 43, 0

Conread position: 76-438
Cow position: chr14:45206795-45207154 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 255
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 45, 129

Conread position: 76-471
Cow position: chr14:45081522-45081936 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 167

Conread position: 76-471
Cow position: chr14:48825754-48826168 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 228

Conread position: 76-483
Cow position: chr14:30705851-30705420 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 285
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 27, 75

Conread position: 76-483
Cow position: chr14:50139036-50139461 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 251

Conread position: 76-487
Cow position: chr14:33402160-33402590 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 238

Conread position: 76-490
Cow position: chr14:17760406-17759974 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 193

Conread position: 77-338
Cow position: chr14:5512297-5512558 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 192
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 51, 157

Conread position: 77-402
Cow position: chr14:15275755-15275420 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 236
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 50, 36

Conread position: 77-468
Cow position: chr14:7472830-7473229 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 166

Conread position: 77-468
Cow position: chr14:45028529-45028112 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 295
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 47, 114

Conread position: 77-471
Cow position: chr14:12899569-12899978 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 36

Conread position: 77-471
Cow position: chr14:13274076-13274491 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 22

Conread position: 77-471
Cow position: chr14:16919241-16918836 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 164

Conread position: 79-402
Cow position: chr14:17685874-17686212 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 164

Conread position: 82-346
Cow position: chr14:44131373-44131632 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 196
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 150, 39

Conread position: 82-383
Cow position: chr14:37455582-37455281 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 216
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 19, 93

Conread position: 82-487
Cow position: chr14:44676595-44677010 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 283
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 33, 70

Conread position: 83-303
Cow position: chr14:34776692-34776919 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 159
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 38, 172

Conread position: 86-408
Cow position: chr14:190449-190786 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 237
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 36, 214

Conread position: 88-294
Cow position: chr14:44286767-44286560 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 157
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 39, 173

Conread position: 88-294
Cow position: chr14:44288671-44288464 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 157
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 39, 173

Conread position: 88-489
Cow position: chr14:38147492-38147905 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 188

Conread position: 89-488
Cow position: chr14:45711229-45710824 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 62

Conread position: 90-471
Cow position: chr14:13620665-13620259 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 154

Conread position: 91-442
Cow position: chr14:33673906-33674262 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 246
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 26, 71

Conread position: 91-485
Cow position: chr14:29580661-29581063 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 274
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 30, 83

Conread position: 91-488
Cow position: chr14:21744591-21745000 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 276
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 13, 112

Conread position: 101-382
Cow position: chr14:49046101-49046394 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 213
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 17, 62

Conread position: 103-489
Cow position: chr14:43558737-43559136 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 111

Conread position: 106-483
Cow position: chr14:13863595-13863201 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 137

Conread position: 122-471
Cow position: chr14:13779460-13779827 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 266
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 110, 118

Conread position: 122-471
Cow position: chr14:38229088-38228752 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 246
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 265, 50

Conread position: 127-488
Cow position: chr14:46529755-46530120 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 250
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 15, 46

Conread position: 133-442
Cow position: chr14:41409452-41409784 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 222
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 147, 0

Conread position: 133-489
Cow position: chr14:30595835-30595468 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 266
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 18, 105

Conread position: 147-289
Cow position: chr14:35917045-35916903 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 85, 61

Conread position: 147-425
Cow position: chr14:30666048-30666336 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 212
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 85, 14

Conread position: 177-483
Cow position: chr14:10147449-10147768 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 217
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 58, 64

Conread position: 213-483
Cow position: chr14:46637176-46637445 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 185
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 5, 31

Conread position: 215-471
Cow position: chr14:33604352-33604621 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 181
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 17, 26

Conread position: 230-489
Cow position: chr14:39722313-39722049 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 182
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 91, 10

Conread position: 234-471
Cow position: chr14:13303605-13303840 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 179
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 43, 6

Conread position: 252-474
Cow position: chr14:45162694-45162915 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 157
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 30, 58

Conread position: 259-491
Cow position: chr14:23932288-23932516 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 167
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 62, 28

Conread position: 273-483
Cow position: chr14:46466364-46466578 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 148
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 42, 26

Show alignments to all cow chromosomes.