Cow genome map

Conread name: Ss1.1-Ova1-OVRM10135F12.5

Conread position: 51-470
Cow position: chr16:23802007-23801573 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 13

Conread position: 69-248
Cow position: chr16:4302216-4302033 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 134
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 54, 75

Conread position: 69-278
Cow position: chr16:11283434-11283648 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 160
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 54, 175

Conread position: 69-282
Cow position: chr16:28377342-28377559 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 159
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 54, 142

Conread position: 69-289
Cow position: chr16:46707242-46707018 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 169
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 54, 174

Conread position: 69-293
Cow position: chr16:4305139-4304913 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 166
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 54, 75

Conread position: 69-468
Cow position: chr16:5661968-5662372 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 80

Conread position: 69-483
Cow position: chr16:25188772-25189201 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 174

Conread position: 69-483
Cow position: chr16:27593630-27594060 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 174

Conread position: 69-489
Cow position: chr16:25171473-25171906 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 301
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 49, 174

Conread position: 69-492
Cow position: chr16:43897151-43896708 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 174

Conread position: 70-272
Cow position: chr16:28437267-28437061 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 147
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 49, 174

Conread position: 71-482
Cow position: chr16:1432313-1432742 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 206

Conread position: 72-289
Cow position: chr16:25258073-25258300 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 168
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 49, 176

Conread position: 72-297
Cow position: chr16:2727161-2726934 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 172
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 50, 218

Conread position: 72-329
Cow position: chr16:27733664-27733414 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 194
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 167, 54

Conread position: 72-352
Cow position: chr16:12537797-12537515 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 204
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 160, 168

Conread position: 72-435
Cow position: chr16:28470974-28470599 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 227

Conread position: 72-451
Cow position: chr16:29034178-29034584 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 199

Conread position: 72-458
Cow position: chr16:19151491-19151089 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 48

Conread position: 72-468
Cow position: chr16:29047150-29047559 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 61

Conread position: 72-469
Cow position: chr16:51084266-51084690 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 169

Conread position: 72-471
Cow position: chr16:406906-406500 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 54

Conread position: 72-471
Cow position: chr16:1567325-1566915 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 118

Conread position: 72-471
Cow position: chr16:2410839-2410428 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 172

Conread position: 72-471
Cow position: chr16:2483012-2482599 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 230

Conread position: 72-471
Cow position: chr16:4478856-4478430 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 164

Conread position: 72-471
Cow position: chr16:5484858-5485271 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 162

Conread position: 72-471
Cow position: chr16:7676327-7675918 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 161

Conread position: 72-471
Cow position: chr16:14665683-14665269 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 172

Conread position: 72-471
Cow position: chr16:15185199-15185614 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 171

Conread position: 72-471
Cow position: chr16:15493630-15494044 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 162

Conread position: 72-471
Cow position: chr16:23535764-23535350 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 243

Conread position: 72-471
Cow position: chr16:25342096-25342498 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 171

Conread position: 72-471
Cow position: chr16:25441754-25442167 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 163

Conread position: 72-471
Cow position: chr16:25457336-25456938 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 163

Conread position: 72-471
Cow position: chr16:26663877-26664292 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 171

Conread position: 72-482
Cow position: chr16:15476968-15477395 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 171

Conread position: 72-483
Cow position: chr16:23252307-23251884 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 118

Conread position: 72-483
Cow position: chr16:25085744-25086170 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 167

Conread position: 72-491
Cow position: chr16:1860349-1860778 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 161

Conread position: 73-271
Cow position: chr16:28197549-28197346 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 146
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 50, 172

Conread position: 73-467
Cow position: chr16:28170243-28169818 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 297
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 50, 177

Conread position: 73-468
Cow position: chr16:34530441-34530840 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 174

Conread position: 73-468
Cow position: chr16:41162944-41162535 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 170

Conread position: 73-483
Cow position: chr16:21185742-21186168 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 170

Conread position: 73-491
Cow position: chr16:42736264-42735831 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 48

Conread position: 74-471
Cow position: chr16:337297-337706 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 18

Conread position: 76-279
Cow position: chr16:20202047-20202254 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 156
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 45, 167

Conread position: 76-471
Cow position: chr16:29090159-29089754 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 280
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 27, 46

Conread position: 76-471
Cow position: chr16:31591788-31591376 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 168

Conread position: 76-489
Cow position: chr16:10565627-10565220 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 180

Conread position: 77-254
Cow position: chr16:41166638-41166458 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 50, 166

Conread position: 77-471
Cow position: chr16:8815974-8815564 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 167

Conread position: 77-471
Cow position: chr16:40296044-40295633 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 124

Conread position: 77-487
Cow position: chr16:10375468-10375040 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 166

Conread position: 78-483
Cow position: chr16:49256088-49255676 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 296
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 40, 125

Conread position: 78-487
Cow position: chr16:23670830-23671254 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 290
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 43, 156

Conread position: 82-465
Cow position: chr16:9209106-9209497 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 258
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 10, 138

Conread position: 82-471
Cow position: chr16:37480991-37480600 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 43

Conread position: 83-489
Cow position: chr16:16271002-16270575 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 194

Conread position: 87-487
Cow position: chr16:27714653-27714253 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 58

Conread position: 88-469
Cow position: chr16:6716445-6716053 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 249
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 10, 120

Conread position: 91-473
Cow position: chr16:25738820-25739201 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 274
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 30, 137

Conread position: 94-360
Cow position: chr16:26651377-26651645 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 187
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 28, 118

Conread position: 102-471
Cow position: chr16:10438409-10438792 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 141

Conread position: 106-384
Cow position: chr16:51405790-51405503 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 213
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 15, 110

Conread position: 109-483
Cow position: chr16:26978302-26978681 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 257
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 14, 169

Conread position: 114-402
Cow position: chr16:41570451-41570761 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 219
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 61, 68

Conread position: 114-483
Cow position: chr16:41755287-41754906 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 262
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 9, 70

Conread position: 114-487
Cow position: chr16:26105893-26105500 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 128

Conread position: 122-489
Cow position: chr16:12668585-12668221 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 242
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 155, 28

Conread position: 126-471
Cow position: chr16:23983481-23983836 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 114

Conread position: 127-418
Cow position: chr16:25080991-25081274 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 198
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 108, 30

Conread position: 128-491
Cow position: chr16:3330139-3330503 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 264
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 104, 28

Conread position: 129-481
Cow position: chr16:33012889-33013244 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 236
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 110, 104

Conread position: 132-471
Cow position: chr16:15567444-15567796 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 108

Conread position: 132-482
Cow position: chr16:837502-837868 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 110

Conread position: 132-491
Cow position: chr16:56916875-56916506 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 179

Conread position: 133-468
Cow position: chr16:3089012-3088668 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 111

Conread position: 165-401
Cow position: chr16:9931071-9931308 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 175
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 106, 81

Conread position: 168-458
Cow position: chr16:7464053-7464356 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 218
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 107, 0

Conread position: 178-487
Cow position: chr16:49234395-49234075 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 62

Conread position: 234-491
Cow position: chr16:49221590-49221322 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 206
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 52, 6

Conread position: 251-487
Cow position: chr16:41166336-41166092 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 175
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 40, 70

Conread position: 275-471
Cow position: chr16:20202333-20202534 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 148
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 46, 12

Conread position: 342-469
Cow position: chr16:20331191-20331319 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 45, 22

Conread position: 343-471
Cow position: chr16:27732971-27732839 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 345-471
Cow position: chr16:54324924-54324795 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 354-482
Cow position: chr16:2726808-2726677 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 33, 0

Show alignments to all cow chromosomes.