Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10135F12.5 |
| Conread position: | 1-471 |
| Cow position: | chr17:151285-150773 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 257 |
| Conread position: | 6-493 |
| Cow position: | chr17:2174436-2174941 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 335 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 58, 245 |
| Conread position: | 67-483 |
| Cow position: | chr17:1657158-1656725 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 300 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 54, 42 |
| Conread position: | 69-259 |
| Cow position: | chr17:20722315-20722507 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 54, 142 |
| Conread position: | 69-468 |
| Cow position: | chr17:2030818-2031233 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 273 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 51, 121 |
| Conread position: | 69-468 |
| Cow position: | chr17:2262800-2263216 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 175 |
| Conread position: | 69-468 |
| Cow position: | chr17:14216337-14215919 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 140 |
| Conread position: | 69-483 |
| Cow position: | chr17:3655598-3655169 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 88 |
| Conread position: | 69-483 |
| Cow position: | chr17:31767345-31766913 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 174 |
| Conread position: | 70-439 |
| Cow position: | chr17:20488633-20489022 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 12, 179 |
| Conread position: | 71-471 |
| Cow position: | chr17:1787241-1786843 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 24, 210 |
| Conread position: | 72-219 |
| Cow position: | chr17:18102988-18102841 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 72-285 |
| Cow position: | chr17:11025815-11025600 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 166, 0 |
| Conread position: | 72-353 |
| Cow position: | chr17:3642133-3641849 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 161 |
| Conread position: | 72-456 |
| Cow position: | chr17:13990651-13990255 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 87, 174 |
| Conread position: | 72-468 |
| Cow position: | chr17:1880797-1881210 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 111 |
| Conread position: | 72-471 |
| Cow position: | chr17:2580321-2580736 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 50 |
| Conread position: | 72-471 |
| Cow position: | chr17:5227317-5227736 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 10, 20 |
| Conread position: | 72-471 |
| Cow position: | chr17:6260556-6260972 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 229 |
| Conread position: | 72-471 |
| Cow position: | chr17:11087023-11086615 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 172 |
| Conread position: | 72-471 |
| Cow position: | chr17:14240197-14240611 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 171 |
| Conread position: | 72-471 |
| Cow position: | chr17:15851391-15851800 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 60 |
| Conread position: | 72-471 |
| Cow position: | chr17:16856819-16856407 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 164 |
| Conread position: | 72-471 |
| Cow position: | chr17:19268130-19267715 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 172 |
| Conread position: | 72-483 |
| Cow position: | chr17:4942031-4941592 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 290 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 56, 139 |
| Conread position: | 72-483 |
| Cow position: | chr17:20099778-20099343 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 247 |
| Conread position: | 72-487 |
| Cow position: | chr17:6069253-6069681 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 171 |
| Conread position: | 72-489 |
| Cow position: | chr17:4060798-4061228 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 19 |
| Conread position: | 72-489 |
| Cow position: | chr17:18194511-18194937 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 49, 19 |
| Conread position: | 72-491 |
| Cow position: | chr17:20087051-20086630 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 135 |
| Conread position: | 73-387 |
| Cow position: | chr17:8209808-8210130 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 50, 173 |
| Conread position: | 73-467 |
| Cow position: | chr17:23323753-23323345 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 170 |
| Conread position: | 73-467 |
| Cow position: | chr17:34156818-34157227 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 171 |
| Conread position: | 73-468 |
| Cow position: | chr17:2247369-2246980 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 136 |
| Conread position: | 73-468 |
| Cow position: | chr17:6120412-6120824 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 139 |
| Conread position: | 73-468 |
| Cow position: | chr17:9080710-9080313 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 284 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 50, 94 |
| Conread position: | 73-468 |
| Cow position: | chr17:43989197-43989610 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 41 |
| Conread position: | 73-470 |
| Cow position: | chr17:24782858-24783272 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 66 |
| Conread position: | 73-483 |
| Cow position: | chr17:1703992-1703571 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 225 |
| Conread position: | 73-483 |
| Cow position: | chr17:8202671-8203079 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 53 |
| Conread position: | 73-487 |
| Cow position: | chr17:250862-251277 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 73-492 |
| Cow position: | chr17:15142657-15142223 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 173 |
| Conread position: | 76-271 |
| Cow position: | chr17:227609-227412 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 48, 136 |
| Conread position: | 76-294 |
| Cow position: | chr17:15156266-15156048 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 48, 129 |
| Conread position: | 76-468 |
| Cow position: | chr17:15436495-15436890 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 166 |
| Conread position: | 76-482 |
| Cow position: | chr17:19020275-19020702 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 286 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 41, 155 |
| Conread position: | 77-469 |
| Cow position: | chr17:31532930-31533319 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 197, 11 |
| Conread position: | 77-471 |
| Cow position: | chr17:14894865-14895284 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 110 |
| Conread position: | 77-471 |
| Cow position: | chr17:40805513-40805919 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 157 |
| Conread position: | 77-487 |
| Cow position: | chr17:15324533-15324961 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 157 |
| Conread position: | 77-491 |
| Cow position: | chr17:14040333-14039909 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 48 |
| Conread position: | 78-471 |
| Cow position: | chr17:20081161-20080760 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 94 |
| Conread position: | 82-483 |
| Cow position: | chr17:54745-54320 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 139 |
| Conread position: | 84-483 |
| Cow position: | chr17:16899596-16899188 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 273 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 43, 188 |
| Conread position: | 86-471 |
| Cow position: | chr17:24029291-24028890 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 158 |
| Conread position: | 87-491 |
| Cow position: | chr17:20403135-20403566 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 39 |
| Conread position: | 88-487 |
| Cow position: | chr17:3708068-3707650 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 282 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 36, 107 |
| Conread position: | 92-319 |
| Cow position: | chr17:42265685-42265907 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 29, 86 |
| Conread position: | 94-465 |
| Cow position: | chr17:239064-239444 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 153 |
| Conread position: | 97-490 |
| Cow position: | chr17:22558710-22559101 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 290 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 24, 69 |
| Conread position: | 98-483 |
| Cow position: | chr17:6611764-6611363 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 145 |
| Conread position: | 100-484 |
| Cow position: | chr17:36621-37018 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 18, 189 |
| Conread position: | 106-483 |
| Cow position: | chr17:4082761-4083147 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 269 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 15, 40 |
| Conread position: | 129-498 |
| Cow position: | chr17:15371984-15372364 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 267 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 112, 104 |
| Conread position: | 172-474 |
| Cow position: | chr17:16121740-16121438 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 69 |
| Conread position: | 190-490 |
| Cow position: | chr17:22133021-22133330 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 50 |
| Conread position: | 233-490 |
| Cow position: | chr17:2078136-2077865 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 43, 7 |
| Conread position: | 240-483 |
| Cow position: | chr17:20390218-20389962 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 255-485 |
| Cow position: | chr17:13695246-13695018 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 45, 26 |
| Conread position: | 329-484 |
| Cow position: | chr17:13675318-13675164 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 58, 28 |
| Conread position: | 354-483 |
| Cow position: | chr17:33284841-33284709 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 354-491 |
| Cow position: | chr17:12669431-12669293 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 33, 52 |
Show alignments to all cow chromosomes.