Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10135F12.5 |
| Conread position: | 69-308 |
| Cow position: | chr19:40886834-40886595 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 43, 15 |
| Conread position: | 69-435 |
| Cow position: | chr19:9707225-9706872 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 12, 17 |
| Conread position: | 69-471 |
| Cow position: | chr19:1656328-1656753 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 284 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 51, 19 |
| Conread position: | 69-471 |
| Cow position: | chr19:32211166-32210750 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 284 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 54, 186 |
| Conread position: | 69-471 |
| Cow position: | chr19:43144619-43145038 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 282 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 47, 178 |
| Conread position: | 69-483 |
| Cow position: | chr19:32193923-32194364 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 175 |
| Conread position: | 69-485 |
| Cow position: | chr19:32182169-32181735 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 291 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 55, 172 |
| Conread position: | 71-327 |
| Cow position: | chr19:347416-347159 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 50, 87 |
| Conread position: | 71-471 |
| Cow position: | chr19:33874337-33874751 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 243 |
| Conread position: | 72-297 |
| Cow position: | chr19:55926533-55926312 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 55, 32 |
| Conread position: | 72-353 |
| Cow position: | chr19:33942517-33942808 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 55, 164 |
| Conread position: | 72-468 |
| Cow position: | chr19:2273470-2273059 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 169 |
| Conread position: | 72-468 |
| Cow position: | chr19:5028159-5027758 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 271 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 22, 173 |
| Conread position: | 72-468 |
| Cow position: | chr19:39391421-39391831 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 162 |
| Conread position: | 72-470 |
| Cow position: | chr19:35384697-35384288 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 282 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 46, 126 |
| Conread position: | 72-471 |
| Cow position: | chr19:173145-173581 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 72-471 |
| Cow position: | chr19:438526-438115 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 164 |
| Conread position: | 72-471 |
| Cow position: | chr19:7489257-7489676 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 173 |
| Conread position: | 72-471 |
| Cow position: | chr19:28580746-28580337 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 53 |
| Conread position: | 72-471 |
| Cow position: | chr19:39184626-39184216 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 172 |
| Conread position: | 72-474 |
| Cow position: | chr19:28405795-28405374 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 72-482 |
| Cow position: | chr19:4386536-4386955 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 168 |
| Conread position: | 72-483 |
| Cow position: | chr19:3138843-3139267 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 242 |
| Conread position: | 72-491 |
| Cow position: | chr19:135880-135440 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 176 |
| Conread position: | 72-491 |
| Cow position: | chr19:1588301-1587891 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 79 |
| Conread position: | 73-210 |
| Cow position: | chr19:6548921-6549061 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 73-279 |
| Cow position: | chr19:52150920-52150712 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 50, 80 |
| Conread position: | 73-468 |
| Cow position: | chr19:7342980-7343390 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 174 |
| Conread position: | 73-483 |
| Cow position: | chr19:773511-773938 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 170 |
| Conread position: | 73-484 |
| Cow position: | chr19:39209-39638 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 288 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 24, 172 |
| Conread position: | 73-487 |
| Cow position: | chr19:28594464-28594885 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 170 |
| Conread position: | 76-313 |
| Cow position: | chr19:342135-342376 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 46, 167 |
| Conread position: | 77-360 |
| Cow position: | chr19:204898-205188 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 48, 166 |
| Conread position: | 77-472 |
| Cow position: | chr19:12774035-12774438 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 48 |
| Conread position: | 78-479 |
| Cow position: | chr19:40851531-40851114 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 130 |
| Conread position: | 80-468 |
| Cow position: | chr19:5900582-5900189 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 163 |
| Conread position: | 80-471 |
| Cow position: | chr19:20105645-20106051 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 163 |
| Conread position: | 82-479 |
| Cow position: | chr19:5652796-5652397 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 57, 26 |
| Conread position: | 90-467 |
| Cow position: | chr19:5729803-5730192 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 144 |
| Conread position: | 92-483 |
| Cow position: | chr19:167638-167220 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 290 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 23, 247 |
| Conread position: | 113-489 |
| Cow position: | chr19:10509503-10509148 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 119, 129 |
| Conread position: | 122-345 |
| Cow position: | chr19:35379555-35379772 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 199, 98 |
| Conread position: | 122-491 |
| Cow position: | chr19:50723517-50723902 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 118 |
| Conread position: | 129-437 |
| Cow position: | chr19:28366987-28367300 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 103, 112 |
| Conread position: | 132-416 |
| Cow position: | chr19:23376800-23377085 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 37, 47 |
| Conread position: | 133-465 |
| Cow position: | chr19:75292-74942 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 84, 154 |
| Conread position: | 136-483 |
| Cow position: | chr19:48861225-48860874 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 96, 105 |
| Conread position: | 153-491 |
| Cow position: | chr19:39096142-39096491 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 79, 27 |
| Conread position: | 155-471 |
| Cow position: | chr19:892626-892300 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 88 |
| Conread position: | 183-483 |
| Cow position: | chr19:30756238-30756557 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 37, 122 |
| Conread position: | 198-485 |
| Cow position: | chr19:6713668-6713387 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 34, 43 |
| Conread position: | 208-483 |
| Cow position: | chr19:256306-256601 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 24, 31 |
| Conread position: | 233-483 |
| Cow position: | chr19:33527188-33527450 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 42, 7 |
| Conread position: | 241-487 |
| Cow position: | chr19:24294193-24294452 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 246-483 |
| Cow position: | chr19:40816429-40816174 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 42, 70 |
| Conread position: | 268-487 |
| Cow position: | chr19:162006-161787 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 115, 26 |
| Conread position: | 273-483 |
| Cow position: | chr19:1489875-1489662 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 22, 44 |
| Conread position: | 334-458 |
| Cow position: | chr19:27050973-27050850 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 53, 25 |
| Conread position: | 342-470 |
| Cow position: | chr19:3174010-3174139 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 45, 15 |
| Conread position: | 344-474 |
| Cow position: | chr19:39667333-39667198 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 43, 0 |
Show alignments to all cow chromosomes.