Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10135F12.5 |
| Conread position: | 1-465 |
| Cow position: | chr20:16178974-16178488 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 322 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 92, 149 |
| Conread position: | 69-221 |
| Cow position: | chr20:30576317-30576470 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 54, 120 |
| Conread position: | 69-383 |
| Cow position: | chr20:38351542-38351863 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 54, 174 |
| Conread position: | 69-386 |
| Cow position: | chr20:7083538-7083213 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 49, 15 |
| Conread position: | 72-192 |
| Cow position: | chr20:7113317-7113197 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 72-279 |
| Cow position: | chr20:17661202-17660992 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 164 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 50, 172 |
| Conread position: | 72-328 |
| Cow position: | chr20:13433728-13433472 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 49, 120 |
| Conread position: | 72-411 |
| Cow position: | chr20:10101831-10101474 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 48 |
| Conread position: | 72-458 |
| Cow position: | chr20:12437835-12437441 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 61 |
| Conread position: | 72-471 |
| Cow position: | chr20:5535806-5536222 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 162 |
| Conread position: | 72-471 |
| Cow position: | chr20:12569392-12569807 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 162 |
| Conread position: | 72-471 |
| Cow position: | chr20:13763779-13764186 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 154 |
| Conread position: | 72-471 |
| Cow position: | chr20:18314477-18314061 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 77 |
| Conread position: | 72-471 |
| Cow position: | chr20:19355635-19356052 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 118 |
| Conread position: | 72-471 |
| Cow position: | chr20:23468791-23468377 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 164 |
| Conread position: | 72-471 |
| Cow position: | chr20:27870075-27870489 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 171 |
| Conread position: | 72-471 |
| Cow position: | chr20:28564718-28564297 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 72-471 |
| Cow position: | chr20:35125367-35125778 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 93 |
| Conread position: | 72-472 |
| Cow position: | chr20:5465920-5466322 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 49, 97 |
| Conread position: | 72-479 |
| Cow position: | chr20:29949375-29949812 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 172 |
| Conread position: | 72-482 |
| Cow position: | chr20:19050671-19050253 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 278 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 49, 132 |
| Conread position: | 72-484 |
| Cow position: | chr20:24615997-24615592 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 172 |
| Conread position: | 72-489 |
| Cow position: | chr20:15292874-15293293 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 162 |
| Conread position: | 72-491 |
| Cow position: | chr20:10839845-10839422 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 270 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 46, 66 |
| Conread position: | 72-491 |
| Cow position: | chr20:14870076-14869647 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 300 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 49, 25 |
| Conread position: | 73-303 |
| Cow position: | chr20:16105667-16105436 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 51, 170 |
| Conread position: | 73-468 |
| Cow position: | chr20:823632-824053 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 73 |
| Conread position: | 73-468 |
| Cow position: | chr20:8973946-8973537 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 174 |
| Conread position: | 73-468 |
| Cow position: | chr20:19438788-19439197 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 170 |
| Conread position: | 74-295 |
| Cow position: | chr20:31498223-31497998 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 76-378 |
| Cow position: | chr20:1742734-1743035 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 26, 111 |
| Conread position: | 77-448 |
| Cow position: | chr20:15097004-15096627 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 159 |
| Conread position: | 77-471 |
| Cow position: | chr20:23799760-23800169 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 166 |
| Conread position: | 77-471 |
| Cow position: | chr20:25849951-25849536 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 294 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 50, 133 |
| Conread position: | 77-482 |
| Cow position: | chr20:28161696-28162113 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 166 |
| Conread position: | 79-244 |
| Cow position: | chr20:21915198-21915365 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 48, 154 |
| Conread position: | 88-487 |
| Cow position: | chr20:8216401-8216815 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 212 |
| Conread position: | 89-483 |
| Cow position: | chr20:13679159-13678748 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 290 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 28, 47 |
| Conread position: | 94-471 |
| Cow position: | chr20:15066372-15066754 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 91 |
| Conread position: | 97-479 |
| Cow position: | chr20:3678550-3678171 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 25, 46 |
| Conread position: | 99-464 |
| Cow position: | chr20:5791257-5791617 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 255 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 28, 45 |
| Conread position: | 113-487 |
| Cow position: | chr20:37581132-37581516 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 260 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 10, 93 |
| Conread position: | 127-360 |
| Cow position: | chr20:27897118-27896884 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 7, 134 |
| Conread position: | 127-483 |
| Cow position: | chr20:5229577-5229215 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 246 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 105, 49 |
| Conread position: | 129-487 |
| Cow position: | chr20:35105709-35106094 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 255 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 82, 92 |
| Conread position: | 133-471 |
| Cow position: | chr20:21394863-21395205 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 107 |
| Conread position: | 136-261 |
| Cow position: | chr20:9521408-9521282 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 10, 43 |
| Conread position: | 149-483 |
| Cow position: | chr20:2788199-2787850 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 41, 94 |
| Conread position: | 177-471 |
| Cow position: | chr20:30686549-30686858 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 226 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 55, 65 |
| Conread position: | 182-483 |
| Cow position: | chr20:13499095-13499411 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 50, 59 |
| Conread position: | 198-471 |
| Cow position: | chr20:13664045-13663769 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 38, 43 |
| Conread position: | 199-470 |
| Cow position: | chr20:9343971-9344251 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 123, 25 |
| Conread position: | 225-483 |
| Cow position: | chr20:27338238-27338497 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 73, 10 |
| Conread position: | 250-489 |
| Cow position: | chr20:28479754-28479987 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 48, 25 |
| Conread position: | 260-471 |
| Cow position: | chr20:21915693-21915916 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 349-471 |
| Cow position: | chr20:17660581-17660457 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 38, 0 |
Show alignments to all cow chromosomes.