Cow genome map

Conread name: Ss1.1-Ova1-OVRM10135F12.5

Conread position: 35-481
Cow position: chr21:16693180-16693629 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 283
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 25, 33

Conread position: 69-280
Cow position: chr21:46916658-46916873 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 164
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 54, 174

Conread position: 69-316
Cow position: chr21:11452674-11452423 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 152
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 54, 175

Conread position: 69-348
Cow position: chr21:13313742-13314022 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 103

Conread position: 69-360
Cow position: chr21:37935807-37936103 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 212
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 54, 174

Conread position: 69-468
Cow position: chr21:2511824-2512242 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 178

Conread position: 69-468
Cow position: chr21:21519614-21519995 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 269
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 46, 101

Conread position: 69-468
Cow position: chr21:39426046-39426456 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 19

Conread position: 69-471
Cow position: chr21:12055021-12054619 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 139

Conread position: 69-480
Cow position: chr21:37149016-37149442 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 278
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 53, 179

Conread position: 71-421
Cow position: chr21:21943778-21943416 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 231
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 47, 9

Conread position: 71-471
Cow position: chr21:27069982-27069566 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 33

Conread position: 71-491
Cow position: chr21:360628-361095 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 170

Conread position: 72-279
Cow position: chr21:21222982-21222770 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 146
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 49, 118

Conread position: 72-279
Cow position: chr21:37719034-37718823 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 166
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 49, 159

Conread position: 72-303
Cow position: chr21:10567662-10567884 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 176
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 167, 53

Conread position: 72-319
Cow position: chr21:6624758-6625006 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 187
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 55, 107

Conread position: 72-388
Cow position: chr21:37046608-37046928 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 224
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 51, 105

Conread position: 72-468
Cow position: chr21:5840278-5839868 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 170

Conread position: 72-469
Cow position: chr21:1287232-1286810 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 257

Conread position: 72-471
Cow position: chr21:146915-147324 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 162

Conread position: 72-471
Cow position: chr21:1192746-1193153 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 60

Conread position: 72-471
Cow position: chr21:2711952-2712334 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 16

Conread position: 72-471
Cow position: chr21:26402502-26402090 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 172

Conread position: 72-471
Cow position: chr21:28985103-28985504 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 271
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 50, 172

Conread position: 72-471
Cow position: chr21:31515342-31514918 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 165

Conread position: 72-471
Cow position: chr21:33253162-33253580 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 132

Conread position: 72-471
Cow position: chr21:35144743-35145157 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 162

Conread position: 72-471
Cow position: chr21:40270686-40270275 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 61

Conread position: 72-473
Cow position: chr21:20743597-20743211 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 278
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 26, 136

Conread position: 72-491
Cow position: chr21:9892877-9893312 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 216

Conread position: 73-468
Cow position: chr21:11506584-11507007 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 294
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 50, 177

Conread position: 73-489
Cow position: chr21:28256420-28256842 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 156

Conread position: 73-492
Cow position: chr21:34001687-34001249 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 293
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 50, 148

Conread position: 76-420
Cow position: chr21:25782630-25782985 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 234
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 176, 37

Conread position: 76-468
Cow position: chr21:37372227-37372633 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 167

Conread position: 76-483
Cow position: chr21:18817564-18817137 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 169

Conread position: 76-483
Cow position: chr21:34823223-34822801 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 33

Conread position: 76-488
Cow position: chr21:4184894-4185336 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 415

Conread position: 77-244
Cow position: chr21:27566634-27566799 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 28, 0

Conread position: 77-318
Cow position: chr21:5018104-5018347 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 179
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 50, 56

Conread position: 77-465
Cow position: chr21:2882747-2882346 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 167

Conread position: 77-479
Cow position: chr21:3779759-3780178 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 22

Conread position: 77-482
Cow position: chr21:10851071-10851494 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 165

Conread position: 79-489
Cow position: chr21:2417209-2417631 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 174

Conread position: 80-272
Cow position: chr21:26637209-26637010 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 146
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 35, 154

Conread position: 81-483
Cow position: chr21:21915681-21916099 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 45

Conread position: 82-266
Cow position: chr21:4077829-4078014 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 144
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 39, 105

Conread position: 82-484
Cow position: chr21:218047-218437 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 281
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 39, 90

Conread position: 82-487
Cow position: chr21:42914361-42914780 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 161

Conread position: 90-492
Cow position: chr21:30081-30492 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 153

Conread position: 92-458
Cow position: chr21:2540071-2539717 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 104

Conread position: 95-483
Cow position: chr21:467877-468267 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 134

Conread position: 96-270
Cow position: chr21:28613105-28613281 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 25, 0

Conread position: 98-481
Cow position: chr21:4588982-4588568 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 293
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 16, 117

Conread position: 117-360
Cow position: chr21:48292483-48292729 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 169
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 160, 106

Conread position: 117-483
Cow position: chr21:26835924-26836307 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 123

Conread position: 118-441
Cow position: chr21:36979878-36979548 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 222
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 57, 64

Conread position: 121-471
Cow position: chr21:30598436-30598082 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 11

Conread position: 123-492
Cow position: chr21:45782521-45782903 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 117

Conread position: 127-483
Cow position: chr21:45786389-45786022 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 247
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 17, 28

Conread position: 132-471
Cow position: chr21:27284501-27284866 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 108

Conread position: 133-481
Cow position: chr21:3169446-3169798 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 230
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 165, 188

Conread position: 137-483
Cow position: chr21:2673953-2673591 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 102

Conread position: 142-407
Cow position: chr21:29625685-29625418 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 189
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 90, 98

Conread position: 143-483
Cow position: chr21:27036341-27035988 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 245
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 89, 97

Conread position: 160-483
Cow position: chr21:47942024-47942358 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 238
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 72, 80

Conread position: 188-466
Cow position: chr21:28736278-28736568 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 203
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 52, 84

Conread position: 190-483
Cow position: chr21:40683339-40683034 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 207
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 42, 51

Conread position: 197-468
Cow position: chr21:47646455-47646724 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 184
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 28, 55

Conread position: 205-471
Cow position: chr21:11452424-11452154 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 183
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 27, 36

Conread position: 208-489
Cow position: chr21:26849896-26849601 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 201
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 91, 17

Conread position: 224-483
Cow position: chr21:7063653-7063913 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 176
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 8, 19

Conread position: 239-444
Cow position: chr21:30562639-30562849 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 155
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 73, 57

Conread position: 288-483
Cow position: chr21:4077988-4078187 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 156
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 33, 8

Conread position: 354-471
Cow position: chr21:10567982-10568101 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 33, 0

Show alignments to all cow chromosomes.