Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10135F12.5 |
| Conread position: | 51-472 |
| Cow position: | chr22:13773322-13773762 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 22, 12 |
| Conread position: | 57-218 |
| Cow position: | chr22:5312172-5312336 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 65, 21 |
| Conread position: | 59-490 |
| Cow position: | chr22:6876489-6876049 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 279 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 16, 169 |
| Conread position: | 65-471 |
| Cow position: | chr22:559904-559480 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 179 |
| Conread position: | 65-479 |
| Cow position: | chr22:6332517-6332947 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 108 |
| Conread position: | 69-255 |
| Cow position: | chr22:35671544-35671355 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 55, 174 |
| Conread position: | 69-289 |
| Cow position: | chr22:14630229-14630452 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 54, 174 |
| Conread position: | 69-354 |
| Cow position: | chr22:37072274-37071981 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 212 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 52, 215 |
| Conread position: | 69-388 |
| Cow position: | chr22:44491844-44492160 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 54, 142 |
| Conread position: | 69-480 |
| Cow position: | chr22:290891-290466 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 281 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 35, 18 |
| Conread position: | 69-483 |
| Cow position: | chr22:11804246-11803813 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 176 |
| Conread position: | 69-483 |
| Cow position: | chr22:20240032-20239601 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 175 |
| Conread position: | 69-489 |
| Cow position: | chr22:12730873-12730441 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 175 |
| Conread position: | 69-526 |
| Cow position: | chr22:37140711-37141186 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 19 |
| Conread position: | 71-266 |
| Cow position: | chr22:6142570-6142377 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 50, 103 |
| Conread position: | 71-471 |
| Cow position: | chr22:11032564-11032976 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 17 |
| Conread position: | 72-359 |
| Cow position: | chr22:31314160-31314451 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 214 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 56, 162 |
| Conread position: | 72-391 |
| Cow position: | chr22:44457868-44458203 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 84 |
| Conread position: | 72-402 |
| Cow position: | chr22:44350849-44350504 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 172 |
| Conread position: | 72-448 |
| Cow position: | chr22:15313138-15312746 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 162 |
| Conread position: | 72-451 |
| Cow position: | chr22:37292856-37292457 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 176 |
| Conread position: | 72-470 |
| Cow position: | chr22:44477424-44477847 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 185 |
| Conread position: | 72-471 |
| Cow position: | chr22:522580-522168 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 81 |
| Conread position: | 72-471 |
| Cow position: | chr22:1520206-1519792 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 33 |
| Conread position: | 72-471 |
| Cow position: | chr22:18815567-18815138 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 172 |
| Conread position: | 72-471 |
| Cow position: | chr22:19142876-19142465 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 61 |
| Conread position: | 72-471 |
| Cow position: | chr22:21590151-21590562 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 162 |
| Conread position: | 72-471 |
| Cow position: | chr22:31334221-31333820 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 171 |
| Conread position: | 72-471 |
| Cow position: | chr22:34169152-34169566 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 171 |
| Conread position: | 72-471 |
| Cow position: | chr22:36184571-36184987 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 172 |
| Conread position: | 72-471 |
| Cow position: | chr22:36860716-36860312 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 72-471 |
| Cow position: | chr22:39468707-39468293 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 172 |
| Conread position: | 72-471 |
| Cow position: | chr22:42991993-42992402 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 61 |
| Conread position: | 72-471 |
| Cow position: | chr22:44397259-44397660 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 171 |
| Conread position: | 72-482 |
| Cow position: | chr22:17327642-17327217 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 130 |
| Conread position: | 72-483 |
| Cow position: | chr22:6502325-6501897 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 25 |
| Conread position: | 72-487 |
| Cow position: | chr22:1281917-1281475 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 128 |
| Conread position: | 72-487 |
| Cow position: | chr22:1323026-1323451 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 53 |
| Conread position: | 72-562 |
| Cow position: | chr22:37133468-37133972 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 231 |
| Conread position: | 73-203 |
| Cow position: | chr22:30677806-30677939 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 73-239 |
| Cow position: | chr22:27284841-27285010 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 73-361 |
| Cow position: | chr22:24950912-24951216 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 50, 173 |
| Conread position: | 73-427 |
| Cow position: | chr22:16201741-16202112 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 258 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 50, 171 |
| Conread position: | 73-467 |
| Cow position: | chr22:27308961-27308553 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 170 |
| Conread position: | 73-468 |
| Cow position: | chr22:537915-538328 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 246 |
| Conread position: | 73-468 |
| Cow position: | chr22:10909022-10908614 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 170 |
| Conread position: | 73-468 |
| Cow position: | chr22:18028096-18028510 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 170 |
| Conread position: | 73-468 |
| Cow position: | chr22:37267975-37268390 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 286 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 51, 122 |
| Conread position: | 73-471 |
| Cow position: | chr22:6021477-6021892 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 242 |
| Conread position: | 73-483 |
| Cow position: | chr22:694436-694862 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 174 |
| Conread position: | 73-483 |
| Cow position: | chr22:3277544-3277119 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 20 |
| Conread position: | 73-487 |
| Cow position: | chr22:1879608-1880050 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 170 |
| Conread position: | 73-491 |
| Cow position: | chr22:45930488-45930917 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 273 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 98, 140 |
| Conread position: | 76-392 |
| Cow position: | chr22:35913340-35913021 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 40, 15 |
| Conread position: | 76-442 |
| Cow position: | chr22:8737512-8737137 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 295 |
| Conread position: | 77-471 |
| Cow position: | chr22:44934791-44935197 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 163 |
| Conread position: | 79-454 |
| Cow position: | chr22:41418494-41418113 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 258 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 42, 198 |
| Conread position: | 82-468 |
| Cow position: | chr22:326346-325965 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 127 |
| Conread position: | 85-303 |
| Cow position: | chr22:36276447-36276675 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 36, 225 |
| Conread position: | 88-482 |
| Cow position: | chr22:35906555-35906151 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 79 |
| Conread position: | 88-490 |
| Cow position: | chr22:3803018-3803430 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 112 |
| Conread position: | 90-262 |
| Cow position: | chr22:8135286-8135114 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 31, 100 |
| Conread position: | 102-471 |
| Cow position: | chr22:5937310-5936924 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 263 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 21, 234 |
| Conread position: | 108-491 |
| Cow position: | chr22:15053572-15053959 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 123, 79 |
| Conread position: | 112-483 |
| Cow position: | chr22:9044988-9045368 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 256 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 85, 128 |
| Conread position: | 112-490 |
| Cow position: | chr22:13673954-13673563 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 256 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 157, 304 |
| Conread position: | 113-472 |
| Cow position: | chr22:38175953-38176317 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 103, 128 |
| Conread position: | 114-435 |
| Cow position: | chr22:46612733-46613054 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 228 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 180, 109 |
| Conread position: | 114-488 |
| Cow position: | chr22:36270078-36270447 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 157, 95 |
| Conread position: | 122-359 |
| Cow position: | chr22:41240241-41240471 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 51, 56 |
| Conread position: | 133-361 |
| Cow position: | chr22:5232414-5232183 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 99, 107 |
| Conread position: | 133-401 |
| Cow position: | chr22:44368740-44368458 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 99, 107 |
| Conread position: | 143-487 |
| Cow position: | chr22:6602321-6601989 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 35 |
| Conread position: | 177-489 |
| Cow position: | chr22:40370372-40370689 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 144, 122 |
| Conread position: | 180-483 |
| Cow position: | chr22:19319937-19320254 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 35, 62 |
| Conread position: | 182-441 |
| Cow position: | chr22:3273235-3272966 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 50, 92 |
| Conread position: | 205-468 |
| Cow position: | chr22:46580772-46580495 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 27, 38 |
| Conread position: | 213-464 |
| Cow position: | chr22:96386-96133 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 23, 28 |
| Conread position: | 213-468 |
| Cow position: | chr22:30677726-30677463 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 19, 30 |
| Conread position: | 233-483 |
| Cow position: | chr22:19536532-19536791 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 78, 7 |
| Conread position: | 240-469 |
| Cow position: | chr22:1268773-1268535 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 59, 25 |
| Conread position: | 242-483 |
| Cow position: | chr22:8121097-8120840 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 33, 72 |
| Conread position: | 248-487 |
| Cow position: | chr22:34600342-34600591 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 28, 52 |
| Conread position: | 280-483 |
| Cow position: | chr22:21035364-21035149 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 43, 22 |
| Conread position: | 350-487 |
| Cow position: | chr22:21195387-21195247 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
Show alignments to all cow chromosomes.