Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10135F12.5 |
| Conread position: | 49-480 |
| Cow position: | chr23:7369321-7369760 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 301 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 33, 37 |
| Conread position: | 58-450 |
| Cow position: | chr23:8299567-8299175 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 54, 10 |
| Conread position: | 69-360 |
| Cow position: | chr23:2312431-2312135 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 46, 175 |
| Conread position: | 69-361 |
| Cow position: | chr23:11077398-11077110 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 43, 124 |
| Conread position: | 69-471 |
| Cow position: | chr23:23171310-23171727 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 174 |
| Conread position: | 69-483 |
| Cow position: | chr23:13510471-13510861 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 278 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 51, 18 |
| Conread position: | 69-490 |
| Cow position: | chr23:15876751-15876324 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 292 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 23, 126 |
| Conread position: | 71-273 |
| Cow position: | chr23:14778349-14778150 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 161, 42 |
| Conread position: | 71-491 |
| Cow position: | chr23:16498416-16497989 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 54 |
| Conread position: | 72-258 |
| Cow position: | chr23:7336940-7337124 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 160, 53 |
| Conread position: | 72-346 |
| Cow position: | chr23:19450927-19451203 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 49, 106 |
| Conread position: | 72-360 |
| Cow position: | chr23:15219089-15218795 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 164 |
| Conread position: | 72-405 |
| Cow position: | chr23:1401713-1401380 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 147, 59 |
| Conread position: | 72-417 |
| Cow position: | chr23:8286844-8287204 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 133 |
| Conread position: | 72-440 |
| Cow position: | chr23:28914208-28914579 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 50, 162 |
| Conread position: | 72-455 |
| Cow position: | chr23:4639808-4639417 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 168 |
| Conread position: | 72-467 |
| Cow position: | chr23:27971354-27971753 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 91 |
| Conread position: | 72-467 |
| Cow position: | chr23:28078466-28078866 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 281 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 163, 89 |
| Conread position: | 72-468 |
| Cow position: | chr23:36030561-36030155 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 169 |
| Conread position: | 72-471 |
| Cow position: | chr23:1956716-1957111 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 140 |
| Conread position: | 72-471 |
| Cow position: | chr23:2026265-2025857 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 61 |
| Conread position: | 72-471 |
| Cow position: | chr23:2758701-2759116 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 162 |
| Conread position: | 72-471 |
| Cow position: | chr23:3880268-3879859 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 128 |
| Conread position: | 72-471 |
| Cow position: | chr23:4889497-4889912 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 165 |
| Conread position: | 72-471 |
| Cow position: | chr23:11779597-11780006 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 162 |
| Conread position: | 72-471 |
| Cow position: | chr23:19490352-19490769 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 61 |
| Conread position: | 72-471 |
| Cow position: | chr23:22146484-22146085 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 159 |
| Conread position: | 72-471 |
| Cow position: | chr23:27400321-27400748 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 171 |
| Conread position: | 72-471 |
| Cow position: | chr23:28367708-28367300 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 28 |
| Conread position: | 72-479 |
| Cow position: | chr23:4817835-4818258 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 123 |
| Conread position: | 72-483 |
| Cow position: | chr23:618646-618233 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 287 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 160, 40 |
| Conread position: | 72-483 |
| Cow position: | chr23:2781155-2780727 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 173 |
| Conread position: | 72-484 |
| Cow position: | chr23:28025483-28025900 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 293 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 55, 93 |
| Conread position: | 72-487 |
| Cow position: | chr23:965682-965251 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 171 |
| Conread position: | 72-487 |
| Cow position: | chr23:20155405-20154973 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 162 |
| Conread position: | 73-468 |
| Cow position: | chr23:3706935-3707348 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 204 |
| Conread position: | 73-483 |
| Cow position: | chr23:29451526-29451113 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 125 |
| Conread position: | 73-491 |
| Cow position: | chr23:25683121-25682708 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 122 |
| Conread position: | 76-226 |
| Cow position: | chr23:14973752-14973594 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 76-236 |
| Cow position: | chr23:4360626-4360789 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 47, 60 |
| Conread position: | 76-409 |
| Cow position: | chr23:16614618-16614273 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 22 |
| Conread position: | 76-470 |
| Cow position: | chr23:19949782-19949366 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 167 |
| Conread position: | 76-490 |
| Cow position: | chr23:2576243-2576656 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 64 |
| Conread position: | 77-360 |
| Cow position: | chr23:2717212-2717495 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 209, 143 |
| Conread position: | 77-471 |
| Cow position: | chr23:14964225-14963828 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 154 |
| Conread position: | 77-471 |
| Cow position: | chr23:15526387-15526791 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 157 |
| Conread position: | 77-483 |
| Cow position: | chr23:5873760-5873338 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 135 |
| Conread position: | 86-471 |
| Cow position: | chr23:15177901-15178299 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 13 |
| Conread position: | 88-427 |
| Cow position: | chr23:1012962-1012619 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 39, 21 |
| Conread position: | 91-489 |
| Cow position: | chr23:29402888-29402478 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 278 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 30, 56 |
| Conread position: | 92-485 |
| Cow position: | chr23:15041911-15041525 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 274 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 33, 13 |
| Conread position: | 107-360 |
| Cow position: | chr23:4510906-4511171 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 15, 116 |
| Conread position: | 114-443 |
| Cow position: | chr23:17186574-17186905 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 124, 109 |
| Conread position: | 117-491 |
| Cow position: | chr23:38581588-38581958 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 125 |
| Conread position: | 127-491 |
| Cow position: | chr23:13511982-13512355 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 56 |
| Conread position: | 129-471 |
| Cow position: | chr23:26159854-26159484 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 103, 111 |
| Conread position: | 132-319 |
| Cow position: | chr23:2440979-2440795 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 7, 68 |
| Conread position: | 133-277 |
| Cow position: | chr23:28218162-28218307 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 99, 107 |
| Conread position: | 141-483 |
| Cow position: | chr23:1023091-1022722 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 137, 98 |
| Conread position: | 144-489 |
| Cow position: | chr23:2794368-2794013 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 97 |
| Conread position: | 192-467 |
| Cow position: | chr23:28108614-28108899 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 43, 49 |
| Conread position: | 199-405 |
| Cow position: | chr23:31649098-31648897 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 33, 8 |
| Conread position: | 225-483 |
| Cow position: | chr23:21243776-21243501 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 63, 91 |
| Conread position: | 233-471 |
| Cow position: | chr23:22167648-22167897 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 92, 9 |
| Conread position: | 233-487 |
| Cow position: | chr23:38669891-38669616 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 44, 7 |
| Conread position: | 249-483 |
| Cow position: | chr23:30237260-30237507 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 37, 24 |
| Conread position: | 260-468 |
| Cow position: | chr23:14972959-14972752 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 81, 32 |
| Conread position: | 315-468 |
| Cow position: | chr23:28218486-28218643 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 26, 14 |
Show alignments to all cow chromosomes.