Cow genome map

Conread name: Ss1.1-Ova1-OVRM10135F12.5

Conread position: 20-471
Cow position: chr24:17371123-17370661 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 307
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 57, 153

Conread position: 56-385
Cow position: chr24:16097440-16097770 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 219
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 67, 25

Conread position: 61-469
Cow position: chr24:40655939-40656354 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 271
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 60, 210

Conread position: 69-248
Cow position: chr24:12484421-12484238 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 139
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 54, 175

Conread position: 69-468
Cow position: chr24:6328135-6327720 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 174

Conread position: 69-468
Cow position: chr24:12699920-12699509 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 183

Conread position: 69-471
Cow position: chr24:12334862-12334445 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 164

Conread position: 69-471
Cow position: chr24:23504968-23504551 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 174

Conread position: 69-483
Cow position: chr24:9187837-9187418 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 175

Conread position: 69-483
Cow position: chr24:29305424-29304989 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 290
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 54, 0

Conread position: 69-483
Cow position: chr24:44018430-44018832 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 278
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 54, 75

Conread position: 69-487
Cow position: chr24:14871417-14870995 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 115

Conread position: 69-488
Cow position: chr24:9091165-9090722 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 42

Conread position: 72-230
Cow position: chr24:40193412-40193573 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 49, 0

Conread position: 72-269
Cow position: chr24:29183050-29183250 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 155
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 49, 170

Conread position: 72-297
Cow position: chr24:11866349-11866123 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 167
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 54, 171

Conread position: 72-430
Cow position: chr24:6059799-6060169 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 249
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 103, 53

Conread position: 72-468
Cow position: chr24:147710-147301 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 162

Conread position: 72-468
Cow position: chr24:4414632-4414225 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 100

Conread position: 72-468
Cow position: chr24:12129168-12128754 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 154

Conread position: 72-471
Cow position: chr24:6406929-6407346 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 171

Conread position: 72-471
Cow position: chr24:7090071-7089656 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 298
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 26, 10

Conread position: 72-471
Cow position: chr24:9544964-9545366 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 101

Conread position: 72-471
Cow position: chr24:12087106-12087520 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 60

Conread position: 72-471
Cow position: chr24:19834291-19834708 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 174

Conread position: 72-471
Cow position: chr24:22971990-22972404 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 162

Conread position: 72-471
Cow position: chr24:29188190-29188604 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 162

Conread position: 72-471
Cow position: chr24:33934272-33934700 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 171

Conread position: 72-471
Cow position: chr24:34494258-34493870 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 276
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 56, 171

Conread position: 72-479
Cow position: chr24:17696083-17695658 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 172

Conread position: 72-487
Cow position: chr24:6675508-6675937 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 277
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 49, 284

Conread position: 72-489
Cow position: chr24:36558872-36558435 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 7

Conread position: 72-491
Cow position: chr24:6337285-6337725 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 316
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 50, 176

Conread position: 73-221
Cow position: chr24:16083939-16084090 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 50, 0

Conread position: 73-276
Cow position: chr24:43814664-43814870 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 152
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 50, 170

Conread position: 73-467
Cow position: chr24:5992327-5991918 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 170

Conread position: 73-467
Cow position: chr24:6435379-6435790 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 159

Conread position: 73-468
Cow position: chr24:6024203-6023797 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 48

Conread position: 73-468
Cow position: chr24:13233152-13233566 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 170

Conread position: 73-468
Cow position: chr24:19702385-19702806 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 138

Conread position: 73-484
Cow position: chr24:6084969-6085388 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 97

Conread position: 73-488
Cow position: chr24:6659591-6659168 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 52

Conread position: 76-221
Cow position: chr24:14383689-14383543 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 42, 122

Conread position: 76-360
Cow position: chr24:12205404-12205114 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 208
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 39, 105

Conread position: 76-468
Cow position: chr24:13189075-13189495 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 283
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 30, 207

Conread position: 76-471
Cow position: chr24:6332791-6332385 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 168

Conread position: 76-471
Cow position: chr24:12238200-12238603 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 148

Conread position: 76-492
Cow position: chr24:38638442-38638868 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 201

Conread position: 77-308
Cow position: chr24:12162815-12163053 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 178
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 35, 166

Conread position: 77-375
Cow position: chr24:36709268-36709582 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 215
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 21, 173

Conread position: 77-385
Cow position: chr24:12143432-12143129 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 207
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 44, 137

Conread position: 77-471
Cow position: chr24:14389638-14389222 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 75

Conread position: 86-471
Cow position: chr24:6129748-6130138 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 39

Conread position: 88-471
Cow position: chr24:8151350-8150976 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 269
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 189, 74

Conread position: 88-471
Cow position: chr24:14754587-14754998 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 155

Conread position: 96-483
Cow position: chr24:6142018-6142408 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 68

Conread position: 102-384
Cow position: chr24:31114578-31114860 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 196
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 19, 141

Conread position: 113-428
Cow position: chr24:25467674-25467360 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 214
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 126, 41

Conread position: 113-430
Cow position: chr24:31006483-31006166 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 217
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 222, 24

Conread position: 115-328
Cow position: chr24:6049491-6049709 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 158
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 60, 67

Conread position: 133-468
Cow position: chr24:12109742-12109395 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 107

Conread position: 133-483
Cow position: chr24:13044668-13044317 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 107

Conread position: 133-487
Cow position: chr24:17321667-17322040 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 264
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 99, 107

Conread position: 133-493
Cow position: chr24:12150350-12149979 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 108

Conread position: 161-491
Cow position: chr24:1450421-1450753 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 241
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 78, 35

Conread position: 175-484
Cow position: chr24:37320582-37320265 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 217
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 11, 146

Conread position: 181-491
Cow position: chr24:6668795-6668484 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 224
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 140, 47

Conread position: 197-487
Cow position: chr24:35869528-35869232 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 218
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 42, 36

Conread position: 198-471
Cow position: chr24:6353185-6353454 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 196
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 80, 92

Conread position: 209-473
Cow position: chr24:6064710-6064445 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 180
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 6, 33

Conread position: 214-491
Cow position: chr24:17409522-17409809 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 194
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 78, 276

Conread position: 249-471
Cow position: chr24:14383560-14383322 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 172
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 45, 18

Show alignments to all cow chromosomes.