Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10135F12.5 |
| Conread position: | 10-194 |
| Cow position: | chr28:10497277-10497091 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 65, 142 |
| Conread position: | 69-289 |
| Cow position: | chr28:2724066-2723843 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 54, 110 |
| Conread position: | 69-474 |
| Cow position: | chr28:7811307-7811715 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 174 |
| Conread position: | 69-483 |
| Cow position: | chr28:484736-484308 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 36 |
| Conread position: | 69-483 |
| Cow position: | chr28:5802891-5803327 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 295 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 46, 178 |
| Conread position: | 69-483 |
| Cow position: | chr28:14751401-14751831 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 174 |
| Conread position: | 69-527 |
| Cow position: | chr28:6538406-6537931 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 94 |
| Conread position: | 72-226 |
| Cow position: | chr28:2085363-2085517 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 49, 60 |
| Conread position: | 72-355 |
| Cow position: | chr28:3019857-3019554 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 72-385 |
| Cow position: | chr28:1217293-1216964 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 239 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 55, 61 |
| Conread position: | 72-402 |
| Cow position: | chr28:5113436-5113092 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 252 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 17, 12 |
| Conread position: | 72-434 |
| Cow position: | chr28:15684098-15684468 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 49, 172 |
| Conread position: | 72-437 |
| Cow position: | chr28:10581227-10580848 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 61 |
| Conread position: | 72-455 |
| Cow position: | chr28:27958821-27958441 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 240, 110 |
| Conread position: | 72-471 |
| Cow position: | chr28:1167016-1166607 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 111 |
| Conread position: | 72-471 |
| Cow position: | chr28:1505730-1506141 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 159 |
| Conread position: | 72-471 |
| Cow position: | chr28:5750839-5750433 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 27 |
| Conread position: | 72-471 |
| Cow position: | chr28:7002856-7003270 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 227 |
| Conread position: | 72-471 |
| Cow position: | chr28:7741311-7741716 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 53 |
| Conread position: | 72-471 |
| Cow position: | chr28:12151166-12151581 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 108 |
| Conread position: | 72-471 |
| Cow position: | chr28:12409365-12408963 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 41 |
| Conread position: | 72-471 |
| Cow position: | chr28:13460834-13461250 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 171 |
| Conread position: | 72-471 |
| Cow position: | chr28:14704527-14704113 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 164 |
| Conread position: | 72-471 |
| Cow position: | chr28:22260291-22259877 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 172 |
| Conread position: | 72-471 |
| Cow position: | chr28:32791515-32791107 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 154 |
| Conread position: | 72-471 |
| Cow position: | chr28:33253164-33253580 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 337 |
| Conread position: | 72-474 |
| Cow position: | chr28:1386531-1386121 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 19 |
| Conread position: | 72-479 |
| Cow position: | chr28:10646539-10646142 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 296 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 203, 55 |
| Conread position: | 72-482 |
| Cow position: | chr28:5938345-5938770 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 171 |
| Conread position: | 72-483 |
| Cow position: | chr28:8720086-8719673 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 171 |
| Conread position: | 72-487 |
| Cow position: | chr28:5765604-5766023 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 26 |
| Conread position: | 72-489 |
| Cow position: | chr28:24668480-24668902 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 75 |
| Conread position: | 72-489 |
| Cow position: | chr28:29820856-29821289 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 162 |
| Conread position: | 72-515 |
| Cow position: | chr28:5814236-5814675 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 7 |
| Conread position: | 73-226 |
| Cow position: | chr28:7823402-7823558 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 73-271 |
| Cow position: | chr28:6779477-6779276 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 50, 170 |
| Conread position: | 73-467 |
| Cow position: | chr28:9179488-9179883 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 138 |
| Conread position: | 73-468 |
| Cow position: | chr28:24589713-24590128 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 175 |
| Conread position: | 76-315 |
| Cow position: | chr28:22064526-22064291 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 152, 28 |
| Conread position: | 76-468 |
| Cow position: | chr28:24884113-24883714 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 169 |
| Conread position: | 76-471 |
| Cow position: | chr28:10072139-10072547 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 167 |
| Conread position: | 77-471 |
| Cow position: | chr28:783538-783931 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 166 |
| Conread position: | 77-471 |
| Cow position: | chr28:8379922-8380338 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 22 |
| Conread position: | 77-471 |
| Cow position: | chr28:26425390-26424980 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 167 |
| Conread position: | 77-489 |
| Cow position: | chr28:3191390-3190962 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 222 |
| Conread position: | 79-469 |
| Cow position: | chr28:10460737-10460337 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 278 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 22, 63 |
| Conread position: | 79-471 |
| Cow position: | chr28:18519582-18519177 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 155 |
| Conread position: | 81-471 |
| Cow position: | chr28:17666437-17666032 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 163 |
| Conread position: | 82-269 |
| Cow position: | chr28:22232551-22232360 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 41, 162 |
| Conread position: | 83-451 |
| Cow position: | chr28:29761059-29760675 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 214 |
| Conread position: | 84-483 |
| Cow position: | chr28:5799169-5799580 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 151 |
| Conread position: | 86-458 |
| Cow position: | chr28:1813989-1813604 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 158 |
| Conread position: | 86-471 |
| Cow position: | chr28:5567029-5567411 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 191 |
| Conread position: | 88-483 |
| Cow position: | chr28:15586968-15587375 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 40, 89 |
| Conread position: | 89-487 |
| Cow position: | chr28:14233061-14232641 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 279 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 34, 208 |
| Conread position: | 89-490 |
| Cow position: | chr28:21360362-21360786 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 309 |
| Conread position: | 98-437 |
| Cow position: | chr28:2988197-2987847 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 144 |
| Conread position: | 100-420 |
| Cow position: | chr28:9268749-9269073 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 101, 9 |
| Conread position: | 117-440 |
| Cow position: | chr28:6231864-6231529 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 164, 109 |
| Conread position: | 122-483 |
| Cow position: | chr28:18146816-18146451 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 156, 116 |
| Conread position: | 141-471 |
| Cow position: | chr28:15035184-15034849 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 92 |
| Conread position: | 151-483 |
| Cow position: | chr28:1954296-1954641 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 247 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 81, 89 |
| Conread position: | 157-467 |
| Cow position: | chr28:22042327-22042017 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 228 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 75, 83 |
| Conread position: | 165-471 |
| Cow position: | chr28:10470464-10470779 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 68 |
| Conread position: | 177-469 |
| Cow position: | chr28:7788925-7788626 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 103, 63 |
| Conread position: | 184-483 |
| Cow position: | chr28:10496557-10496245 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 60, 5 |
| Conread position: | 189-486 |
| Cow position: | chr28:13374257-13373965 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 52 |
| Conread position: | 198-471 |
| Cow position: | chr28:7027268-7026983 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 38, 43 |
| Conread position: | 210-483 |
| Cow position: | chr28:7826984-7827273 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 66, 13 |
| Conread position: | 262-468 |
| Cow position: | chr28:2085513-2085730 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 29, 49 |
| Conread position: | 350-487 |
| Cow position: | chr28:17389552-17389692 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 41, 0 |
Show alignments to all cow chromosomes.