Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10135F12.5 |
| Conread position: | 1-471 |
| Cow position: | chr29:251487-251987 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 321 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 40, 138 |
| Conread position: | 66-472 |
| Cow position: | chr29:13650878-13651290 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 27 |
| Conread position: | 68-230 |
| Cow position: | chr29:15894029-15893863 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 68-290 |
| Cow position: | chr29:15968040-15967816 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 55, 175 |
| Conread position: | 69-265 |
| Cow position: | chr29:34926300-34926499 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 54, 174 |
| Conread position: | 69-265 |
| Cow position: | chr29:38208247-38208049 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 54, 160 |
| Conread position: | 69-471 |
| Cow position: | chr29:35297654-35298056 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 175 |
| Conread position: | 69-483 |
| Cow position: | chr29:669236-668818 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 174 |
| Conread position: | 69-483 |
| Cow position: | chr29:7845204-7845639 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 180 |
| Conread position: | 69-483 |
| Cow position: | chr29:18856126-18855698 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 75 |
| Conread position: | 69-483 |
| Cow position: | chr29:31096559-31096130 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 136 |
| Conread position: | 69-483 |
| Cow position: | chr29:31182226-31182655 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 174 |
| Conread position: | 69-483 |
| Cow position: | chr29:32558932-32558504 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 290 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 48, 181 |
| Conread position: | 69-483 |
| Cow position: | chr29:35815153-35814723 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 174 |
| Conread position: | 71-379 |
| Cow position: | chr29:43408795-43408484 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 65, 122 |
| Conread position: | 72-227 |
| Cow position: | chr29:14216794-14216949 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 49, 60 |
| Conread position: | 72-288 |
| Cow position: | chr29:2690737-2690956 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 55, 158 |
| Conread position: | 72-301 |
| Cow position: | chr29:2840552-2840320 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 55, 174 |
| Conread position: | 72-418 |
| Cow position: | chr29:40502152-40501797 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 251 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 55, 64 |
| Conread position: | 72-423 |
| Cow position: | chr29:2949520-2949177 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 288, 49 |
| Conread position: | 72-437 |
| Cow position: | chr29:21238550-21238191 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 244 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 160, 49 |
| Conread position: | 72-469 |
| Cow position: | chr29:7430393-7429981 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 164 |
| Conread position: | 72-469 |
| Cow position: | chr29:32287026-32287417 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 60 |
| Conread position: | 72-469 |
| Cow position: | chr29:43323385-43323795 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 53 |
| Conread position: | 72-471 |
| Cow position: | chr29:646622-647029 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 63 |
| Conread position: | 72-471 |
| Cow position: | chr29:10647421-10647010 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 60 |
| Conread position: | 72-471 |
| Cow position: | chr29:10823148-10822744 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 94 |
| Conread position: | 72-471 |
| Cow position: | chr29:14210743-14210332 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 171 |
| Conread position: | 72-471 |
| Cow position: | chr29:14586746-14587157 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 317 |
| Conread position: | 72-471 |
| Cow position: | chr29:19622458-19622043 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 170 |
| Conread position: | 72-471 |
| Cow position: | chr29:20251990-20252406 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 171 |
| Conread position: | 72-471 |
| Cow position: | chr29:23976949-23977363 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 61 |
| Conread position: | 72-471 |
| Cow position: | chr29:25931715-25931291 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 171 |
| Conread position: | 72-471 |
| Cow position: | chr29:26164001-26163597 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 61 |
| Conread position: | 72-471 |
| Cow position: | chr29:32540920-32541334 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 170 |
| Conread position: | 72-471 |
| Cow position: | chr29:34798979-34798570 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 53 |
| Conread position: | 72-471 |
| Cow position: | chr29:38227804-38228217 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 161 |
| Conread position: | 72-471 |
| Cow position: | chr29:39078880-39078468 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 172 |
| Conread position: | 72-471 |
| Cow position: | chr29:42803236-42803650 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 253 |
| Conread position: | 72-471 |
| Cow position: | chr29:45205328-45205738 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 162 |
| Conread position: | 72-471 |
| Cow position: | chr29:45586550-45586141 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 172 |
| Conread position: | 72-479 |
| Cow position: | chr29:5958428-5958838 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 60 |
| Conread position: | 72-481 |
| Cow position: | chr29:5981888-5981460 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 7 |
| Conread position: | 72-482 |
| Cow position: | chr29:19654457-19654878 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 61 |
| Conread position: | 72-483 |
| Cow position: | chr29:14085300-14084877 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 11 |
| Conread position: | 72-487 |
| Cow position: | chr29:9620244-9620669 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 226 |
| Conread position: | 72-488 |
| Cow position: | chr29:9642936-9642535 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 205 |
| Conread position: | 72-489 |
| Cow position: | chr29:32804263-32804674 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 291 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 27, 13 |
| Conread position: | 73-468 |
| Cow position: | chr29:13582905-13583315 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 285 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 24, 128 |
| Conread position: | 73-487 |
| Cow position: | chr29:19885893-19886329 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 308 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 42, 179 |
| Conread position: | 75-492 |
| Cow position: | chr29:609794-609384 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 70 |
| Conread position: | 76-279 |
| Cow position: | chr29:41366858-41366653 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 42, 165 |
| Conread position: | 77-236 |
| Cow position: | chr29:16173508-16173349 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 41, 57 |
| Conread position: | 77-289 |
| Cow position: | chr29:43791253-43791469 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 46, 166 |
| Conread position: | 77-471 |
| Cow position: | chr29:45460552-45460981 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 108 |
| Conread position: | 78-483 |
| Cow position: | chr29:8664346-8664760 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 36 |
| Conread position: | 79-424 |
| Cow position: | chr29:6265442-6265074 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 48, 164 |
| Conread position: | 80-468 |
| Cow position: | chr29:16111211-16111622 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 169 |
| Conread position: | 80-471 |
| Cow position: | chr29:15997832-15997415 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 163 |
| Conread position: | 83-360 |
| Cow position: | chr29:21426188-21425907 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 210 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 40, 51 |
| Conread position: | 86-417 |
| Cow position: | chr29:2100688-2101035 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 249 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 41, 60 |
| Conread position: | 89-379 |
| Cow position: | chr29:21264783-21265076 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 32, 120 |
| Conread position: | 90-360 |
| Cow position: | chr29:13920770-13920494 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 193 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 33, 145 |
| Conread position: | 90-483 |
| Cow position: | chr29:27980081-27979673 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 153 |
| Conread position: | 92-471 |
| Cow position: | chr29:801547-801161 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 265 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 29, 100 |
| Conread position: | 92-489 |
| Cow position: | chr29:32891641-32892048 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 103 |
| Conread position: | 100-438 |
| Cow position: | chr29:37164991-37165338 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 18, 171 |
| Conread position: | 102-424 |
| Cow position: | chr29:35263535-35263849 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 21, 70 |
| Conread position: | 102-485 |
| Cow position: | chr29:34873672-34874067 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 256 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 19, 144 |
| Conread position: | 106-474 |
| Cow position: | chr29:2747572-2747198 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 76 |
| Conread position: | 120-471 |
| Cow position: | chr29:47562-47199 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 21 |
| Conread position: | 120-491 |
| Cow position: | chr29:3176531-3176162 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 112, 70 |
| Conread position: | 122-470 |
| Cow position: | chr29:27263016-27262661 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 38 |
| Conread position: | 143-385 |
| Cow position: | chr29:15946920-15946683 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 132, 80 |
| Conread position: | 160-468 |
| Cow position: | chr29:2465951-2465620 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 241 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 64, 82 |
| Conread position: | 180-449 |
| Cow position: | chr29:16023506-16023787 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 52, 61 |
| Conread position: | 184-487 |
| Cow position: | chr29:13622905-13622603 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 47, 56 |
| Conread position: | 220-483 |
| Cow position: | chr29:42939223-42938944 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 12, 28 |
| Conread position: | 296-471 |
| Cow position: | chr29:2840290-2840106 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 15, 111 |
| Conread position: | 352-471 |
| Cow position: | chr29:16345325-16345446 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 35, 0 |
Show alignments to all cow chromosomes.