Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Ova1-OVRM10148B09.5
        

               Conread position:
               1-164
               

               Cow position:
               chr11:45155721-45155883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               118
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               1-175
               

               Cow position:
               chr11:70030445-70030274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               1-193
               

               Cow position:
               chr11:12010104-12009915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               24, 5
               

               Conread position:
               1-194
               

               Cow position:
               chr11:30700520-30700328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               1-198
               

               Cow position:
               chr11:44875503-44875308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               149
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               1-199
               

               Cow position:
               chr11:8366586-8366389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               1-205
               

               Cow position:
               chr11:23883373-23883170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               1-205
               

               Cow position:
               chr11:59583456-59583253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               1-205
               

               Cow position:
               chr11:84532240-84532437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               1-206
               

               Cow position:
               chr11:9870526-9870329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               137, 5
               

               Conread position:
               1-218
               

               Cow position:
               chr11:2069371-2069159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               1-219
               

               Cow position:
               chr11:7229386-7229170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               152
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               1-221
               

               Cow position:
               chr11:46781043-46781261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               1-221
               

               Cow position:
               chr11:67295981-67296204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               193, 8
               

               Conread position:
               1-221
               

               Cow position:
               chr11:80471928-80472149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               55, 5
               

               Conread position:
               1-226
               

               Cow position:
               chr11:42358226-42358006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               174
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               1-227
               

               Cow position:
               chr11:5273548-5273773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               1-227
               

               Cow position:
               chr11:56463388-56463163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               1-228
               

               Cow position:
               chr11:27833729-27833957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               134, 5
               

               Conread position:
               1-229
               

               Cow position:
               chr11:3796261-3796037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               162
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               1-229
               

               Cow position:
               chr11:5482420-5482646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               1-229
               

               Cow position:
               chr11:11991023-11990797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               1-229
               

               Cow position:
               chr11:12353866-12354093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               1-229
               

               Cow position:
               chr11:19099459-19099687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               168
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               195, 5
               

               Conread position:
               1-229
               

               Cow position:
               chr11:26121894-26122121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               102, 5
               

               Conread position:
               1-229
               

               Cow position:
               chr11:29663028-29663250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               1-229
               

               Cow position:
               chr11:32077757-32077983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               1-229
               

               Cow position:
               chr11:35738318-35738543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               1-229
               

               Cow position:
               chr11:39151624-39151397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               49, 41
               

               Conread position:
               1-229
               

               Cow position:
               chr11:41167668-41167895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               1-229
               

               Cow position:
               chr11:43510949-43511172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               161
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               1-229
               

               Cow position:
               chr11:44154057-44154279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               172
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               1-229
               

               Cow position:
               chr11:44255099-44254873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               1-229
               

               Cow position:
               chr11:65282036-65281818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               167
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               21, 5
               

               Conread position:
               1-229
               

               Cow position:
               chr11:71332528-71332300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               167
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               87, 5
               

               Conread position:
               1-229
               

               Cow position:
               chr11:76960484-76960261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               1-231
               

               Cow position:
               chr11:12317044-12317273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               173
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               1-231
               

               Cow position:
               chr11:17980266-17980494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               171
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               1-231
               

               Cow position:
               chr11:38640976-38640748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               127, 5
               

               Conread position:
               1-231
               

               Cow position:
               chr11:41093836-41094065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               172
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               1-231
               

               Cow position:
               chr11:45633080-45633301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               1-231
               

               Cow position:
               chr11:48168047-48168270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               1-231
               

               Cow position:
               chr11:58399358-58399128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               206, 5
               

               Conread position:
               1-231
               

               Cow position:
               chr11:63478877-63478648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               1-236
               

               Cow position:
               chr11:3496070-3495835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               177
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-145
               

               Cow position:
               chr11:56227955-56227812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               113
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-184
               

               Cow position:
               chr11:56652217-56652395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               2-218
               

               Cow position:
               chr11:58211368-58211576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               2-221
               

               Cow position:
               chr11:11257092-11256875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               175
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 13
               

               Conread position:
               2-227
               

               Cow position:
               chr11:18146524-18146744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               2-227
               

               Cow position:
               chr11:52846501-52846275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               172
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               110, 0
               

               Conread position:
               2-229
               

               Cow position:
               chr11:7680987-7680762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               2-229
               

               Cow position:
               chr11:12077381-12077602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               84, 90
               

               Conread position:
               2-229
               

               Cow position:
               chr11:21620167-21619941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               15, 175
               

               Conread position:
               2-229
               

               Cow position:
               chr11:60824798-60824574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               2-229
               

               Cow position:
               chr11:62574960-62575180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               2-229
               

               Cow position:
               chr11:73513346-73513573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               176
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-231
               

               Cow position:
               chr11:417447-417676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               176
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-231
               

               Cow position:
               chr11:8266841-8266609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               168, 0
               

               Conread position:
               2-231
               

               Cow position:
               chr11:8829753-8829971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               2-231
               

               Cow position:
               chr11:11315803-11316035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               172
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               160, 0
               

               Conread position:
               2-231
               

               Cow position:
               chr11:12178114-12177885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               173
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-231
               

               Cow position:
               chr11:13044748-13044964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               2-231
               

               Cow position:
               chr11:26068091-26068322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               103, 196
               

               Conread position:
               2-231
               

               Cow position:
               chr11:41106368-41106591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               29, 46
               

               Conread position:
               2-231
               

               Cow position:
               chr11:44106707-44106476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               132, 83
               

               Conread position:
               2-231
               

               Cow position:
               chr11:48982316-48982087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               134, 42
               

               Conread position:
               2-231
               

               Cow position:
               chr11:62791921-62791692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               165
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-233
               

               Cow position:
               chr11:49171472-49171703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               171
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-236
               

               Cow position:
               chr11:54728483-54728256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               20, 79
               

               Conread position:
               3-229
               

               Cow position:
               chr11:10851139-10850920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               162, 0
               

               Conread position:
               5-175
               

               Cow position:
               chr11:44131382-44131214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               120
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               5-218
               

               Cow position:
               chr11:42309158-42309370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               5-219
               

               Cow position:
               chr11:27660252-27660043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               5-221
               

               Cow position:
               chr11:65852134-65852350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               57, 154
               

               Conread position:
               5-229
               

               Cow position:
               chr11:27938633-27938407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               165
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               190, 0
               

               Conread position:
               5-229
               

               Cow position:
               chr11:38832456-38832678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               5-229
               

               Cow position:
               chr11:53428999-53429223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               5-230
               

               Cow position:
               chr11:30200672-30200895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               168
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               5-231
               

               Cow position:
               chr11:9153875-9154099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               134, 0
               

               Conread position:
               5-231
               

               Cow position:
               chr11:30190771-30190550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               172
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               153, 26
               

               Conread position:
               5-231
               

               Cow position:
               chr11:33733556-33733781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               5-231
               

               Cow position:
               chr11:35542045-35542271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               169
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               5-231
               

               Cow position:
               chr11:35861631-35861861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               198, 74
               

               Conread position:
               5-231
               

               Cow position:
               chr11:40487176-40486956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               171
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               5-231
               

               Cow position:
               chr11:41177943-41177714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               172
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               5-236
               

               Cow position:
               chr11:27922818-27922585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               6-117
               

               Cow position:
               chr11:12111949-12111838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               112
               

               Alignm identity:
               89
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-117
               

               Cow position:
               chr11:67746435-67746324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               112
               

               Alignm identity:
               94
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-125
               

               Cow position:
               chr11:3230342-3230227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               95
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               6-149
               

               Cow position:
               chr11:32762474-32762331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               107
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-153
               

               Cow position:
               chr11:63167499-63167640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               118
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               121, 31
               

               Conread position:
               6-153
               

               Cow position:
               chr11:78778083-78778240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               121
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               6-155
               

               Cow position:
               chr11:21853229-21853378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               110
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-157
               

               Cow position:
               chr11:7152022-7151871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               108
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-158
               

               Cow position:
               chr11:31834239-31834391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               110
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-164
               

               Cow position:
               chr11:51034298-51034140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               120
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-165
               

               Cow position:
               chr11:26561298-26561457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               115
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               43, 73
               

               Conread position:
               6-170
               

               Cow position:
               chr11:26482592-26482430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               118
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               6-171
               

               Cow position:
               chr11:30164594-30164429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               116
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-172
               

               Cow position:
               chr11:15047481-15047315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               125
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-183
               

               Cow position:
               chr11:8844201-8844022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               130
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               106, 84
               

               Conread position:
               6-186
               

               Cow position:
               chr11:7704717-7704538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               124
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               6-193
               

               Cow position:
               chr11:15988310-15988123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-202
               

               Cow position:
               chr11:67744404-67744214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               142
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               6-203
               

               Cow position:
               chr11:81316858-81317051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               143
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               6-204
               

               Cow position:
               chr11:38505209-38505406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               143
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               187, 0
               

               Conread position:
               6-205
               

               Cow position:
               chr11:43361697-43361894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               37, 46
               

               Conread position:
               6-206
               

               Cow position:
               chr11:75711231-75711431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-207
               

               Cow position:
               chr11:31836206-31836011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               54, 36
               

               Conread position:
               6-207
               

               Cow position:
               chr11:66389985-66390186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               154
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-211
               

               Cow position:
               chr11:23494774-23494568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               53, 36
               

               Conread position:
               6-216
               

               Cow position:
               chr11:46583390-46583596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               92, 16
               

               Conread position:
               6-221
               

               Cow position:
               chr11:25336161-25335947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               151, 0
               

               Conread position:
               6-221
               

               Cow position:
               chr11:25808728-25808940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               6-225
               

               Cow position:
               chr11:61426707-61426492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               200, 20
               

               Conread position:
               6-227
               

               Cow position:
               chr11:7381090-7380871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               117, 0
               

               Conread position:
               6-227
               

               Cow position:
               chr11:12763158-12763388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               6-227
               

               Cow position:
               chr11:25864591-25864802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               157
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               6-227
               

               Cow position:
               chr11:52128231-52128010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               168
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-227
               

               Cow position:
               chr11:73137614-73137392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               171
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 0
               

               Conread position:
               6-228
               

               Cow position:
               chr11:21728998-21729220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               174
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-228
               

               Cow position:
               chr11:41228981-41229199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               6-229
               

               Cow position:
               chr11:2835285-2835063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               163
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               6-229
               

               Cow position:
               chr11:3681820-3682037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               128, 119
               

               Conread position:
               6-229
               

               Cow position:
               chr11:4267133-4267356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               167
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-229
               

               Cow position:
               chr11:8494524-8494302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               159
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               195, 208
               

               Conread position:
               6-229
               

               Cow position:
               chr11:11592002-11591778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               61, 162
               

               Conread position:
               6-229
               

               Cow position:
               chr11:14259939-14260157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               6-229
               

               Cow position:
               chr11:15835933-15835715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               6-229
               

               Cow position:
               chr11:15995516-15995285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               172
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               111, 0
               

               Conread position:
               6-229
               

               Cow position:
               chr11:21896673-21896901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               71, 45
               

               Conread position:
               6-229
               

               Cow position:
               chr11:25564774-25564551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               156
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               188, 63
               

               Conread position:
               6-229
               

               Cow position:
               chr11:26550497-26550277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               170
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               6-229
               

               Cow position:
               chr11:27284458-27284236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               6-229
               

               Cow position:
               chr11:31865654-31865432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               155
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               50, 11
               

               Conread position:
               6-229
               

               Cow position:
               chr11:32455076-32454853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               164
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-229
               

               Cow position:
               chr11:33000901-33000678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               165
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               49, 41
               

               Conread position:
               6-229
               

               Cow position:
               chr11:35241847-35242070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               168
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               40, 35
               

               Conread position:
               6-229
               

               Cow position:
               chr11:37279558-37279777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               160
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               188, 62
               

               Conread position:
               6-229
               

               Cow position:
               chr11:41101936-41101715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               158
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               211, 29
               

               Conread position:
               6-229
               

               Cow position:
               chr11:41314317-41314095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               167
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               6-229
               

               Cow position:
               chr11:49550993-49551218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               40, 46
               

               Conread position:
               6-229
               

               Cow position:
               chr11:49556305-49556523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               122, 40
               

               Conread position:
               6-229
               

               Cow position:
               chr11:52463302-52463080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               157
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               196, 11
               

               Conread position:
               6-229
               

               Cow position:
               chr11:57754197-57754419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               6-229
               

               Cow position:
               chr11:58804800-58805021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               169
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               113, 0
               

               Conread position:
               6-229
               

               Cow position:
               chr11:67848950-67849182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               109, 0
               

               Conread position:
               6-229
               

               Cow position:
               chr11:67863259-67863477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               154
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               6-229
               

               Cow position:
               chr11:75511166-75511393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               6-229
               

               Cow position:
               chr11:76566486-76566255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               49, 43
               

               Conread position:
               6-229
               

               Cow position:
               chr11:77746185-77746408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               175, 119
               

               Conread position:
               6-229
               

               Cow position:
               chr11:80789369-80789594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               152, 0
               

               Conread position:
               6-229
               

               Cow position:
               chr11:84967130-84966913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               137, 0
               

               Conread position:
               6-230
               

               Cow position:
               chr11:10958851-10958628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               167
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               141, 0
               

               Conread position:
               6-230
               

               Cow position:
               chr11:26534860-26534631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               178
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:260121-260350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 128
               

               Conread position:
               6-231
               

               Cow position:
               chr11:1492826-1493051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               40, 25
               

               Conread position:
               6-231
               

               Cow position:
               chr11:1504974-1505200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:2285735-2285510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               168
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:2567661-2567881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               151, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:3238323-3238098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               169
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:4206196-4205975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               175
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               177, 118
               

               Conread position:
               6-231
               

               Cow position:
               chr11:6343481-6343257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               167
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:7120941-7121166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               171
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:7324530-7324307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               134, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:7719493-7719718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               43, 35
               

               Conread position:
               6-231
               

               Cow position:
               chr11:8443966-8444190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               165
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               111, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:9388359-9388135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               165
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               217, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:9708170-9707945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               165
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:10043061-10043286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               171
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:10093892-10093670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               198, 70
               

               Conread position:
               6-231
               

               Cow position:
               chr11:10365374-10365589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               177
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               119, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:10698724-10698949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               169
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:10871803-10872028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               174
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:13087645-13087870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               168
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:14469531-14469326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:15495410-15495185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               169
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:16547928-16548153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               170
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:17104680-17104892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:17549180-17548955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:17782007-17782230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               165
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:17854116-17853891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               172
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:17997912-17998136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               172
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:18067780-18068008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               16, 133
               

               Conread position:
               6-231
               

               Cow position:
               chr11:18438969-18438745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               113, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:19061052-19061277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               165
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:20285596-20285821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               171
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:20731200-20731425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               171
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:22617924-22618149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               172
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:23896542-23896317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               169
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:24333971-24334196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               172
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:24493786-24494011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               172
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:24601004-24600787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               176
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:26592755-26592980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               168
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:27724879-27725104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               175
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:28125537-28125312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               165
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:28631555-28631330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               172
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:28692952-28693173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               40, 72
               

               Conread position:
               6-231
               

               Cow position:
               chr11:29614414-29614189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               167
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:29616286-29616500 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:30057228-30057004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               182
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:30255459-30255230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               170
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:30776985-30776760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               170
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:30929404-30929179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               169
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:32477790-32478015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               167
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:32875921-32876146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               171
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:34638482-34638707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               169
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:35142310-35142535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               165
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:38574463-38574687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               168
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               170, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:38599692-38599917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               166
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:38793601-38793383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               159, 45
               

               Conread position:
               6-231
               

               Cow position:
               chr11:40458198-40457972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               116, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:41260906-41261131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               170
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:41599661-41599891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:42793912-42794160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               40, 238
               

               Conread position:
               6-231
               

               Cow position:
               chr11:44233445-44233231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:47972830-47973055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               170
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:48428163-48427945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               125, 63
               

               Conread position:
               6-231
               

               Cow position:
               chr11:49935726-49935943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               176
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               159, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:50510650-50510875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               168
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:50833737-50833962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               169
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:54302559-54302334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               168
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:57185387-57185162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               171
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:57625168-57625392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               166
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               131, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:58049905-58050128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:58136739-58136514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               168
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:59444524-59444749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               171
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:59871837-59871613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:60605113-60604888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:60756957-60757177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               162
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               18, 23
               

               Conread position:
               6-231
               

               Cow position:
               chr11:61397599-61397818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               142, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:62225278-62225055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               177
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:63652655-63652878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:63860621-63860846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               174
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:64353300-64353525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               168
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:65760584-65760809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               166
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:67453677-67453452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               168
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:67920316-67920535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               166
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               151, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:72369076-72368850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:73798679-73798901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               166
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:74990642-74990417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               165
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:75354230-75354000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:76767439-76767215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               173
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               49, 43
               

               Conread position:
               6-231
               

               Cow position:
               chr11:83001051-83000826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               172
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:84774187-84773962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               176
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-232
               

               Cow position:
               chr11:44915659-44915891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               6-232
               

               Cow position:
               chr11:67599592-67599375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               6-236
               

               Cow position:
               chr11:1667644-1667419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               170
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               6-236
               

               Cow position:
               chr11:21471647-21471425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               6-236
               

               Cow position:
               chr11:63390460-63390687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               173
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               6-238
               

               Cow position:
               chr11:50949974-50949737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               37, 79
               

               Conread position:
               6-254
               

               Cow position:
               chr11:4675595-4675841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               7-202
               

               Cow position:
               chr11:62009780-62009976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               151, 0
               

               Conread position:
               7-228
               

               Cow position:
               chr11:67348096-67348315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               142, 13
               

               Conread position:
               7-229
               

               Cow position:
               chr11:4024330-4024550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               7-229
               

               Cow position:
               chr11:44580212-44580434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               7-236
               

               Cow position:
               chr11:75402489-75402715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               168
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               55, 73
               

               Conread position:
               8-227
               

               Cow position:
               chr11:49037377-49037596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               24, 67
               

               Conread position:
               8-229
               

               Cow position:
               chr11:27055693-27055916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               8-233
               

               Cow position:
               chr11:67741006-67741232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               152
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               188, 0
               

               Conread position:
               9-216
               

               Cow position:
               chr11:63507527-63507320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               149
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               99, 42
               

               Conread position:
               10-218
               

               Cow position:
               chr11:18105673-18105876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               10-229
               

               Cow position:
               chr11:28226760-28226980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               148, 0
               

               Conread position:
               10-230
               

               Cow position:
               chr11:26400499-26400278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               196, 7
               

               Conread position:
               10-231
               

               Cow position:
               chr11:33319101-33319323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               162
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               198, 187
               

               Conread position:
               10-231
               

               Cow position:
               chr11:45107872-45107638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               166
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               10-237
               

               Cow position:
               chr11:10873605-10873386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               222, 41
               

               Conread position:
               11-227
               

               Cow position:
               chr11:13062390-13062606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               180
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               12-164
               

               Cow position:
               chr11:68130428-68130275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               112, 0
               

               Conread position:
               12-224
               

               Cow position:
               chr11:35425804-35426018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               43, 28
               

               Conread position:
               12-227
               

               Cow position:
               chr11:74928819-74928604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               12-230
               

               Cow position:
               chr11:22933609-22933825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               201, 26
               

               Conread position:
               12-231
               

               Cow position:
               chr11:16229633-16229850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               43, 14
               

               Conread position:
               12-231
               

               Cow position:
               chr11:31929462-31929253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               12-231
               

               Cow position:
               chr11:44516159-44516372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               163
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               12-232
               

               Cow position:
               chr11:67954110-67954326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               172
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               146, 82
               

               Conread position:
               12-236
               

               Cow position:
               chr11:83284907-83284685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               164
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               13-218
               

               Cow position:
               chr11:77749081-77748878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               161, 0
               

               Conread position:
               14-231
               

               Cow position:
               chr11:7374457-7374241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               5, 111
               

               Conread position:
               17-228
               

               Cow position:
               chr11:80591374-80591160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               153
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               149, 0
               

               Conread position:
               17-229
               

               Cow position:
               chr11:45651902-45652114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               149
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               17-231
               

               Cow position:
               chr11:19507340-19507127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               171
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 38
               

               Conread position:
               18-193
               

               Cow position:
               chr11:5584429-5584601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               18-206
               

               Cow position:
               chr11:32016559-32016745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               126, 27
               

               Conread position:
               18-217
               

               Cow position:
               chr11:9971859-9972050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               36, 13
               

               Conread position:
               18-231
               

               Cow position:
               chr11:49236957-49237168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               129, 88
               

               Conread position:
               19-231
               

               Cow position:
               chr11:17279583-17279789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               143
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               30-231
               

               Cow position:
               chr11:19271266-19271465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               27, 166
               

               Conread position:
               32-236
               

               Cow position:
               chr11:9079568-9079774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               138, 19
               

               Conread position:
               40-229
               

               Cow position:
               chr11:24584899-24584716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               49-187
               

               Cow position:
               chr11:4396812-4396951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               108
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               125, 8
               

               Conread position:
               49-231
               

               Cow position:
               chr11:10128784-10128963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               28, 118
               

               Conread position:
               49-231
               

               Cow position:
               chr11:25759732-25759550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               51-229
               

               Cow position:
               chr11:18890312-18890134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               37, 113
               

               Conread position:
               53-231
               

               Cow position:
               chr11:72366166-72365985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               61-231
               

               Cow position:
               chr11:7375749-7375580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               102, 47
               

               Conread position:
               64-228
               

               Cow position:
               chr11:28393841-28393677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               64-231
               

               Cow position:
               chr11:56917049-56917210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               132
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               66-218
               

               Cow position:
               chr11:24873012-24873161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               116
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               66-227
               

               Cow position:
               chr11:14650733-14650568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               123
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               128, 0
               

               Conread position:
               66-229
               

               Cow position:
               chr11:18920624-18920787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               131
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               66-229
               

               Cow position:
               chr11:24396294-24396134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               66-229
               

               Cow position:
               chr11:58139665-58139504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               66-229
               

               Cow position:
               chr11:85390888-85391049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               69-231
               

               Cow position:
               chr11:60222727-60222889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               69-231
               

               Cow position:
               chr11:79748923-79749085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               69-236
               

               Cow position:
               chr11:61847774-61847941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               135
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               70-231
               

               Cow position:
               chr11:8246123-8245962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               128
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               71-227
               

               Cow position:
               chr11:20494149-20494302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               114
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               125, 0
               

               Conread position:
               73-231
               

               Cow position:
               chr11:39599907-39600065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               85-218
               

               Cow position:
               chr11:81338453-81338586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               102
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               88-231
               

               Cow position:
               chr11:72313388-72313245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               110
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               91-231
               

               Cow position:
               chr11:81067686-81067546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               113
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               96-231
               

               Cow position:
               chr11:2534531-2534396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               108
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               96-231
               

               Cow position:
               chr11:45102557-45102692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               109
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               97-231
               

               Cow position:
               chr11:77236503-77236370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               103
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               111-231
               

               Cow position:
               chr11:53285311-53285431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               121
               

               Alignm identity:
               97
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               0, 0
               
Show alignments to all cow chromosomes.
Conread position:	1-164
Cow position:	chr11:45155721-45155883 (view UCSC Genome Browser custom track)
Alignm length:	164
Alignm identity:	118
Alignm E-value:	1e-23
Alignm gaps (pig, cow):	5, 0
Conread position:	1-175
Cow position:	chr11:70030445-70030274 (view UCSC Genome Browser custom track)
Alignm length:	175
Alignm identity:	125
Alignm E-value:	1e-23
Alignm gaps (pig, cow):	5, 0
Conread position:	1-193
Cow position:	chr11:12010104-12009915 (view UCSC Genome Browser custom track)
Alignm length:	194
Alignm identity:	136
Alignm E-value:	1e-22
Alignm gaps (pig, cow):	24, 5
Conread position:	1-194
Cow position:	chr11:30700520-30700328 (view UCSC Genome Browser custom track)
Alignm length:	194
Alignm identity:	142
Alignm E-value:	3e-32
Alignm gaps (pig, cow):	5, 0
Conread position:	1-198
Cow position:	chr11:44875503-44875308 (view UCSC Genome Browser custom track)
Alignm length:	198
Alignm identity:	149
Alignm E-value:	5e-36
Alignm gaps (pig, cow):	5, 0
Conread position:	1-199
Cow position:	chr11:8366586-8366389 (view UCSC Genome Browser custom track)
Alignm length:	199
Alignm identity:	150
Alignm E-value:	2e-37
Alignm gaps (pig, cow):	5, 0
Conread position:	1-205
Cow position:	chr11:23883373-23883170 (view UCSC Genome Browser custom track)
Alignm length:	205
Alignm identity:	149
Alignm E-value:	1e-33
Alignm gaps (pig, cow):	5, 0
Conread position:	1-206
Cow position:	chr11:9870526-9870329 (view UCSC Genome Browser custom track)
Alignm length:	207
Alignm identity:	143
Alignm E-value:	1e-21
Alignm gaps (pig, cow):	137, 5
Conread position:	1-218
Cow position:	chr11:2069371-2069159 (view UCSC Genome Browser custom track)
Alignm length:	218
Alignm identity:	151
Alignm E-value:	5e-26
Alignm gaps (pig, cow):	5, 0
Conread position:	1-219
Cow position:	chr11:7229386-7229170 (view UCSC Genome Browser custom track)
Alignm length:	219
Alignm identity:	152
Alignm E-value:	7e-29
Alignm gaps (pig, cow):	5, 0
Conread position:	1-221
Cow position:	chr11:46781043-46781261 (view UCSC Genome Browser custom track)
Alignm length:	221
Alignm identity:	162
Alignm E-value:	2e-37
Alignm gaps (pig, cow):	5, 0
Conread position:	1-226
Cow position:	chr11:42358226-42358006 (view UCSC Genome Browser custom track)
Alignm length:	226
Alignm identity:	174
Alignm E-value:	4.06377e-44
Alignm gaps (pig, cow):	5, 0
Conread position:	1-227
Cow position:	chr11:5273548-5273773 (view UCSC Genome Browser custom track)
Alignm length:	227
Alignm identity:	164
Alignm E-value:	2e-37
Alignm gaps (pig, cow):	5, 0
Conread position:	1-228
Cow position:	chr11:27833729-27833957 (view UCSC Genome Browser custom track)
Alignm length:	230
Alignm identity:	167
Alignm E-value:	2e-37
Alignm gaps (pig, cow):	134, 5
Conread position:	1-229
Cow position:	chr11:3796261-3796037 (view UCSC Genome Browser custom track)
Alignm length:	229
Alignm identity:	162
Alignm E-value:	9e-32
Alignm gaps (pig, cow):	5, 0
Conread position:	1-231
Cow position:	chr11:12317044-12317273 (view UCSC Genome Browser custom track)
Alignm length:	231
Alignm identity:	173
Alignm E-value:	4.06377e-44
Alignm gaps (pig, cow):	5, 0
Conread position:	1-236
Cow position:	chr11:3496070-3495835 (view UCSC Genome Browser custom track)
Alignm length:	236
Alignm identity:	177
Alignm E-value:	0
Alignm gaps (pig, cow):	0, 0
Conread position:	2-145
Cow position:	chr11:56227955-56227812 (view UCSC Genome Browser custom track)
Alignm length:	144
Alignm identity:	113
Alignm E-value:	2e-29
Alignm gaps (pig, cow):	0, 0
Conread position:	2-184
Cow position:	chr11:56652217-56652395 (view UCSC Genome Browser custom track)
Alignm length:	183
Alignm identity:	133
Alignm E-value:	2e-26
Alignm gaps (pig, cow):	40, 0
Conread position:	2-218
Cow position:	chr11:58211368-58211576 (view UCSC Genome Browser custom track)
Alignm length:	217
Alignm identity:	152
Alignm E-value:	2e-26
Alignm gaps (pig, cow):	47, 0