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Cow genome map

           
Conread name:
           
Ss1.1-Ova1-OVRM10149B09.5
        

               
Conread position:
               
357-652
               

               
Cow position:
               
chr1:82443365-82443651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
153, 43
               

               
Conread position:
               
417-709
               

               
Cow position:
               
chr1:71253511-71253806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
64, 9
               

               
Conread position:
               
424-710
               

               
Cow position:
               
chr1:31548864-31548586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
49, 16
               

               
Conread position:
               
431-693
               

               
Cow position:
               
chr1:51818965-51818706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
13, 26
               

               
Conread position:
               
437-711
               

               
Cow position:
               
chr1:32562255-32562531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
24, 7
               

               
Conread position:
               
443-690
               

               
Cow position:
               
chr1:24728829-24729072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
443-691
               

               
Cow position:
               
chr1:10942084-10942325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
66, 13
               

               
Conread position:
               
443-691
               

               
Cow position:
               
chr1:10964302-10964061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
66, 13
               

               
Conread position:
               
443-707
               

               
Cow position:
               
chr1:635204-634942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
443-707
               

               
Cow position:
               
chr1:96478710-96478446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
63, 33
               

               
Conread position:
               
443-708
               

               
Cow position:
               
chr1:46693644-46693906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
118, 16
               

               
Conread position:
               
443-708
               

               
Cow position:
               
chr1:50679269-50679536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
25, 13
               

               
Conread position:
               
443-710
               

               
Cow position:
               
chr1:666376-666108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
443-710
               

               
Cow position:
               
chr1:25383680-25383407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
8, 16
               

               
Conread position:
               
443-710
               

               
Cow position:
               
chr1:34000921-34000653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
68, 12
               

               
Conread position:
               
443-710
               

               
Cow position:
               
chr1:43380014-43380281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
19, 13
               

               
Conread position:
               
443-710
               

               
Cow position:
               
chr1:61735425-61735691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
110, 13
               

               
Conread position:
               
443-710
               

               
Cow position:
               
chr1:73561637-73561901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
20, 13
               

               
Conread position:
               
443-710
               

               
Cow position:
               
chr1:73584399-73584654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
70, 13
               

               
Conread position:
               
443-710
               

               
Cow position:
               
chr1:79844483-79844217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
31, 10
               

               
Conread position:
               
444-708
               

               
Cow position:
               
chr1:10633063-10632803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
21, 150
               

               
Conread position:
               
444-708
               

               
Cow position:
               
chr1:20205040-20204776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
24, 44
               

               
Conread position:
               
444-710
               

               
Cow position:
               
chr1:40600055-40599800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
19, 158
               

               
Conread position:
               
444-710
               

               
Cow position:
               
chr1:52754126-52754394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
26, 69
               

               
Conread position:
               
444-711
               

               
Cow position:
               
chr1:65390837-65390569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
26, 52
               

               
Conread position:
               
444-711
               

               
Cow position:
               
chr1:99837074-99837339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
15, 22
               

               
Conread position:
               
445-708
               

               
Cow position:
               
chr1:81563748-81563483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
36, 23
               

               
Conread position:
               
445-710
               

               
Cow position:
               
chr1:52329515-52329780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
65, 150
               

               
Conread position:
               
446-707
               

               
Cow position:
               
chr1:22467944-22467681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
40, 24
               

               
Conread position:
               
446-708
               

               
Cow position:
               
chr1:53595329-53595075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
64, 10
               

               
Conread position:
               
446-709
               

               
Cow position:
               
chr1:60707411-60707152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
109, 10
               

               
Conread position:
               
446-710
               

               
Cow position:
               
chr1:21573060-21572791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
17, 10
               

               
Conread position:
               
446-710
               

               
Cow position:
               
chr1:29935376-29935633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
109, 30
               

               
Conread position:
               
446-710
               

               
Cow position:
               
chr1:76222681-76222943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
67, 10
               

               
Conread position:
               
446-712
               

               
Cow position:
               
chr1:11913872-11914131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
109, 10
               

               
Conread position:
               
446-721
               

               
Cow position:
               
chr1:34856621-34856893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
18, 10
               

               
Conread position:
               
447-687
               

               
Cow position:
               
chr1:43358004-43358244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
63, 9
               

               
Conread position:
               
447-710
               

               
Cow position:
               
chr1:52039639-52039385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
62, 19
               

               
Conread position:
               
447-711
               

               
Cow position:
               
chr1:61564800-61564538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
62, 21
               

               
Conread position:
               
447-711
               

               
Cow position:
               
chr1:96712801-96713067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
62, 9
               

               
Conread position:
               
448-710
               

               
Cow position:
               
chr1:54199374-54199632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
63, 8
               

               
Conread position:
               
448-711
               

               
Cow position:
               
chr1:63390762-63391025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
63, 8
               

               
Conread position:
               
449-666
               

               
Cow position:
               
chr1:100393162-100393373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
106, 7
               

               
Conread position:
               
449-690
               

               
Cow position:
               
chr1:95050083-95050332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
14, 7
               

               
Conread position:
               
449-701
               

               
Cow position:
               
chr1:97611656-97611896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
114, 7
               

               
Conread position:
               
449-706
               

               
Cow position:
               
chr1:70538615-70538355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
62, 7
               

               
Conread position:
               
449-706
               

               
Cow position:
               
chr1:95176943-95176687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
14, 7
               

               
Conread position:
               
449-707
               

               
Cow position:
               
chr1:3340942-3340688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
14, 7
               

               
Conread position:
               
449-707
               

               
Cow position:
               
chr1:84255771-84255505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
16, 7
               

               
Conread position:
               
449-708
               

               
Cow position:
               
chr1:13414035-13413777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
61, 11
               

               
Conread position:
               
449-708
               

               
Cow position:
               
chr1:46218580-46218333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
39, 9
               

               
Conread position:
               
449-708
               

               
Cow position:
               
chr1:53308385-53308642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
14, 7
               

               
Conread position:
               
449-708
               

               
Cow position:
               
chr1:69264814-69264572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
106, 7
               

               
Conread position:
               
449-708
               

               
Cow position:
               
chr1:82337772-82338035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
14, 9
               

               
Conread position:
               
449-709
               

               
Cow position:
               
chr1:43505533-43505272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
25, 7
               

               
Conread position:
               
449-710
               

               
Cow position:
               
chr1:4374333-4374590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
45, 7
               

               
Conread position:
               
449-710
               

               
Cow position:
               
chr1:12595897-12596153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
21, 36
               

               
Conread position:
               
449-710
               

               
Cow position:
               
chr1:41004356-41004619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
449-710
               

               
Cow position:
               
chr1:54258571-54258315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
44, 7
               

               
Conread position:
               
449-710
               

               
Cow position:
               
chr1:56658037-56657789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
62, 7
               

               
Conread position:
               
449-710
               

               
Cow position:
               
chr1:88652635-88652379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
62, 7
               

               
Conread position:
               
449-710
               

               
Cow position:
               
chr1:90868437-90868688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
62, 7
               

               
Conread position:
               
449-710
               

               
Cow position:
               
chr1:98551724-98551465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
60, 7
               

               
Conread position:
               
449-711
               

               
Cow position:
               
chr1:1991414-1991681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
62, 7
               

               
Conread position:
               
449-716
               

               
Cow position:
               
chr1:76019689-76019936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
62, 7
               

               
Conread position:
               
449-717
               

               
Cow position:
               
chr1:37321994-37322265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
40, 19
               

               
Conread position:
               
449-717
               

               
Cow position:
               
chr1:39068952-39069210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
54, 7
               

               
Conread position:
               
451-709
               

               
Cow position:
               
chr1:47233475-47233726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
51, 36
               

               
Conread position:
               
453-708
               

               
Cow position:
               
chr1:11021031-11020785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
100, 59
               

               
Conread position:
               
455-657
               

               
Cow position:
               
chr1:81471133-81470929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
56, 10
               

               
Conread position:
               
455-710
               

               
Cow position:
               
chr1:82504976-82504715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
58, 13
               

               
Conread position:
               
455-714
               

               
Cow position:
               
chr1:3456869-3456616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
56, 33
               

               
Conread position:
               
455-716
               

               
Cow position:
               
chr1:44125643-44125895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
20, 139
               

               
Conread position:
               
456-698
               

               
Cow position:
               
chr1:94404212-94403976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
53, 36
               

               
Conread position:
               
456-706
               

               
Cow position:
               
chr1:52995022-52994776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
82, 59
               

               
Conread position:
               
456-708
               

               
Cow position:
               
chr1:80900118-80899858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
12, 35
               

               
Conread position:
               
456-710
               

               
Cow position:
               
chr1:81569030-81569288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
456-717
               

               
Cow position:
               
chr1:197007-197261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
7, 15
               

               
Conread position:
               
457-717
               

               
Cow position:
               
chr1:83747940-83747684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
6, 28
               

               
Conread position:
               
457-720
               

               
Cow position:
               
chr1:56477589-56477333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
28, 102
               

               
Conread position:
               
458-694
               

               
Cow position:
               
chr1:102784954-102784724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
97, 29
               

               
Conread position:
               
458-712
               

               
Cow position:
               
chr1:85162551-85162801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
8, 13
               

               
Conread position:
               
459-710
               

               
Cow position:
               
chr1:14379538-14379782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
16, 30
               

               
Conread position:
               
459-710
               

               
Cow position:
               
chr1:48105436-48105686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
50, 36
               

               
Conread position:
               
459-721
               

               
Cow position:
               
chr1:95765090-95765353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
17, 90
               

               
Conread position:
               
460-704
               

               
Cow position:
               
chr1:84811946-84812183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
53, 24
               

               
Conread position:
               
461-708
               

               
Cow position:
               
chr1:33717222-33716971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
461-710
               

               
Cow position:
               
chr1:57305830-57305580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
39, 144
               

               
Conread position:
               
464-697
               

               
Cow position:
               
chr1:26929975-26930213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
16, 230
               

               
Conread position:
               
464-699
               

               
Cow position:
               
chr1:20288110-20287876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
47, 18
               

               
Conread position:
               
464-710
               

               
Cow position:
               
chr1:51628507-51628754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
47, 19
               

               
Conread position:
               
464-714
               

               
Cow position:
               
chr1:78857327-78857577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
28, 81
               

               
Conread position:
               
465-710
               

               
Cow position:
               
chr1:71748013-71748259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
25, 102
               

               
Conread position:
               
465-710
               

               
Cow position:
               
chr1:83982373-83982629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
25, 160
               

               
Conread position:
               
465-711
               

               
Cow position:
               
chr1:92370362-92370612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
25, 83
               

               
Conread position:
               
466-698
               

               
Cow position:
               
chr1:41697050-41696817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
45, 219
               

               
Conread position:
               
467-686
               

               
Cow position:
               
chr1:79278456-79278670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
44, 130
               

               
Conread position:
               
467-707
               

               
Cow position:
               
chr1:68716989-68717232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
5, 18
               

               
Conread position:
               
467-710
               

               
Cow position:
               
chr1:86113413-86113665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
29, 149
               

               
Conread position:
               
467-716
               

               
Cow position:
               
chr1:54478315-54478064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
46, 137
               

               
Conread position:
               
468-701
               

               
Cow position:
               
chr1:20002245-20002479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
26, 134
               

               
Conread position:
               
468-705
               

               
Cow position:
               
chr1:3244836-3244603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
43, 22
               

               
Conread position:
               
468-706
               

               
Cow position:
               
chr1:102349765-102350006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
43, 24
               

               
Conread position:
               
468-710
               

               
Cow position:
               
chr1:3323856-3323606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
18, 48
               

               
Conread position:
               
468-710
               

               
Cow position:
               
chr1:52753179-52753418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
88, 47
               

               
Conread position:
               
468-710
               

               
Cow position:
               
chr1:99095352-99095111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
40, 141
               

               
Conread position:
               
468-721
               

               
Cow position:
               
chr1:74084207-74084453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
43, 13
               

               
Conread position:
               
469-658
               

               
Cow position:
               
chr1:15333873-15333677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
42, 120
               

               
Conread position:
               
469-689
               

               
Cow position:
               
chr1:31348452-31348672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
42, 33
               

               
Conread position:
               
469-693
               

               
Cow position:
               
chr1:85596929-85596708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
42, 13
               

               
Conread position:
               
469-698
               

               
Cow position:
               
chr1:44506956-44506728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
40, 15
               

               
Conread position:
               
469-701
               

               
Cow position:
               
chr1:20799872-20799629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
42, 18
               

               
Conread position:
               
469-702
               

               
Cow position:
               
chr1:56635084-56634852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
42, 89
               

               
Conread position:
               
469-707
               

               
Cow position:
               
chr1:92963384-92963149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
37, 88
               

               
Conread position:
               
469-708
               

               
Cow position:
               
chr1:81228353-81228581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
86, 48
               

               
Conread position:
               
469-709
               

               
Cow position:
               
chr1:43352669-43352900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
42, 90
               

               
Conread position:
               
469-710
               

               
Cow position:
               
chr1:22448596-22448836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
25, 137
               

               
Conread position:
               
469-710
               

               
Cow position:
               
chr1:81355720-81355955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
39, 82
               

               
Conread position:
               
469-711
               

               
Cow position:
               
chr1:55163904-55163669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
469-711
               

               
Cow position:
               
chr1:77462349-77462111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
42, 130
               

               
Conread position:
               
469-711
               

               
Cow position:
               
chr1:98563151-98562907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
40, 72
               

               
Conread position:
               
469-712
               

               
Cow position:
               
chr1:57637360-57637118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
26, 51
               

               
Conread position:
               
469-714
               

               
Cow position:
               
chr1:37706985-37707225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
86, 46
               

               
Conread position:
               
470-695
               

               
Cow position:
               
chr1:100512588-100512359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
21, 139
               

               
Conread position:
               
470-704
               

               
Cow position:
               
chr1:83582946-83583186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
24, 89
               

               
Conread position:
               
470-709
               

               
Cow position:
               
chr1:90641018-90640774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
41, 14
               

               
Conread position:
               
471-657
               

               
Cow position:
               
chr1:24542596-24542781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
34, 11
               

               
Conread position:
               
471-662
               

               
Cow position:
               
chr1:43872344-43872539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
471-710
               

               
Cow position:
               
chr1:45019823-45020055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
82, 11
               

               
Conread position:
               
471-710
               

               
Cow position:
               
chr1:91816787-91817026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
40, 18
               

               
Conread position:
               
472-656
               

               
Cow position:
               
chr1:51654397-51654212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
39, 134
               

               
Conread position:
               
472-698
               

               
Cow position:
               
chr1:71078971-71079193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
19, 87
               

               
Conread position:
               
472-704
               

               
Cow position:
               
chr1:4294041-4293818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
33, 110
               

               
Conread position:
               
472-704
               

               
Cow position:
               
chr1:26159444-26159678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
18, 143
               

               
Conread position:
               
472-706
               

               
Cow position:
               
chr1:21954245-21954466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
16, 75
               

               
Conread position:
               
472-708
               

               
Cow position:
               
chr1:71045739-71045505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
39, 12
               

               
Conread position:
               
472-709
               

               
Cow position:
               
chr1:4291146-4290907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
38, 142
               

               
Conread position:
               
472-710
               

               
Cow position:
               
chr1:1802125-1801892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
14, 59
               

               
Conread position:
               
472-710
               

               
Cow position:
               
chr1:5872987-5873223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
34, 10
               

               
Conread position:
               
472-710
               

               
Cow position:
               
chr1:60907361-60907109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
472-710
               

               
Cow position:
               
chr1:78783532-78783294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
23, 15
               

               
Conread position:
               
472-711
               

               
Cow position:
               
chr1:94226570-94226801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
90, 15
               

               
Conread position:
               
472-716
               

               
Cow position:
               
chr1:21787316-21787068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
472-717
               

               
Cow position:
               
chr1:45535691-45535443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
39, 86
               

               
Conread position:
               
472-717
               

               
Cow position:
               
chr1:57635446-57635208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
39, 20
               

               
Conread position:
               
472-717
               

               
Cow position:
               
chr1:57698461-57698715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
9, 74
               

               
Conread position:
               
472-747
               

               
Cow position:
               
chr1:34686174-34685909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
36, 15
               

               
Conread position:
               
473-704
               

               
Cow position:
               
chr1:18936850-18937080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
82, 39
               

               
Conread position:
               
473-710
               

               
Cow position:
               
chr1:33702103-33701868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
38, 131
               

               
Conread position:
               
473-711
               

               
Cow position:
               
chr1:77620529-77620297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
38, 75
               

               
Conread position:
               
473-711
               

               
Cow position:
               
chr1:99136445-99136683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
22, 132
               

               
Conread position:
               
474-693
               

               
Cow position:
               
chr1:55357303-55357521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
37, 8
               

               
Conread position:
               
474-708
               

               
Cow position:
               
chr1:74822429-74822201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
81, 8
               

               
Conread position:
               
474-712
               

               
Cow position:
               
chr1:11770309-11770547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
35, 18
               

               
Conread position:
               
475-707
               

               
Cow position:
               
chr1:55135815-55135587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
27, 73
               

               
Conread position:
               
475-711
               

               
Cow position:
               
chr1:23633928-23634153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
80, 46
               

               
Conread position:
               
475-717
               

               
Cow position:
               
chr1:11772088-11772340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
476-702
               

               
Cow position:
               
chr1:10655465-10655233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
34, 14
               

               
Conread position:
               
476-708
               

               
Cow position:
               
chr1:5409632-5409865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
35, 113
               

               
Conread position:
               
476-710
               

               
Cow position:
               
chr1:4027849-4027609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
32, 45
               

               
Conread position:
               
476-710
               

               
Cow position:
               
chr1:15308015-15307782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
61, 40
               

               
Conread position:
               
476-710
               

               
Cow position:
               
chr1:47658329-47658103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
15, 111
               

               
Conread position:
               
476-711
               

               
Cow position:
               
chr1:33811909-33811681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
35, 126
               

               
Conread position:
               
476-716
               

               
Cow position:
               
chr1:55146783-55146543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
35, 16
               

               
Conread position:
               
477-677
               

               
Cow position:
               
chr1:49433280-49433484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
31, 67
               

               
Conread position:
               
477-698
               

               
Cow position:
               
chr1:95057034-95056815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
40, 133
               

               
Conread position:
               
477-708
               

               
Cow position:
               
chr1:45288891-45289123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
34, 103
               

               
Conread position:
               
477-709
               

               
Cow position:
               
chr1:28176989-28176749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
34, 13
               

               
Conread position:
               
477-710
               

               
Cow position:
               
chr1:12222623-12222857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
34, 128
               

               
Conread position:
               
477-710
               

               
Cow position:
               
chr1:53374413-53374183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
12, 109
               

               
Conread position:
               
477-710
               

               
Cow position:
               
chr1:81613369-81613133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
477-711
               

               
Cow position:
               
chr1:1956353-1956582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
78, 38
               

               
Conread position:
               
478-711
               

               
Cow position:
               
chr1:68845507-68845733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
31, 51
               

               
Conread position:
               
479-708
               

               
Cow position:
               
chr1:79165106-79165342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
482-709
               

               
Cow position:
               
chr1:89395577-89395340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
483-676
               

               
Cow position:
               
chr1:6304888-6305087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
483-699
               

               
Cow position:
               
chr1:31234956-31235175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
72, 29
               

               
Conread position:
               
483-710
               

               
Cow position:
               
chr1:66430272-66430049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
25, 46
               

               
Conread position:
               
484-660
               

               
Cow position:
               
chr1:28563599-28563771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
71, 31
               

               
Conread position:
               
484-673
               

               
Cow position:
               
chr1:74956047-74956239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
22, 132
               

               
Conread position:
               
484-676
               

               
Cow position:
               
chr1:69415739-69415936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
484-688
               

               
Cow position:
               
chr1:64804131-64804339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
71, 102
               

               
Conread position:
               
484-689
               

               
Cow position:
               
chr1:78809854-78809652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
27, 112
               

               
Conread position:
               
484-696
               

               
Cow position:
               
chr1:51770062-51769847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
27, 159
               

               
Conread position:
               
484-697
               

               
Cow position:
               
chr1:26729690-26729489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
484-701
               

               
Cow position:
               
chr1:3962722-3962927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
26, 65
               

               
Conread position:
               
484-702
               

               
Cow position:
               
chr1:56643616-56643833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
20, 64
               

               
Conread position:
               
484-703
               

               
Cow position:
               
chr1:71119490-71119266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
27, 64
               

               
Conread position:
               
484-703
               

               
Cow position:
               
chr1:84239139-84239352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
25, 111
               

               
Conread position:
               
484-706
               

               
Cow position:
               
chr1:34159809-34159584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
25, 133
               

               
Conread position:
               
484-706
               

               
Cow position:
               
chr1:57395957-57396177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
27, 11
               

               
Conread position:
               
484-706
               

               
Cow position:
               
chr1:93528673-93528442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
13, 152
               

               
Conread position:
               
484-707
               

               
Cow position:
               
chr1:25793461-25793689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
27, 60
               

               
Conread position:
               
484-707
               

               
Cow position:
               
chr1:49839479-49839257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
27, 74
               

               
Conread position:
               
484-708
               

               
Cow position:
               
chr1:3751965-3752193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
21, 47
               

               
Conread position:
               
484-708
               

               
Cow position:
               
chr1:39418147-39418368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
24, 121
               

               
Conread position:
               
484-708
               

               
Cow position:
               
chr1:91142182-91142404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
25, 111
               

               
Conread position:
               
484-709
               

               
Cow position:
               
chr1:19998068-19998286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
27, 16
               

               
Conread position:
               
484-709
               

               
Cow position:
               
chr1:49131142-49131373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
27, 64
               

               
Conread position:
               
484-709
               

               
Cow position:
               
chr1:63434832-63435054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
27, 92
               

               
Conread position:
               
484-710
               

               
Cow position:
               
chr1:15547445-15547217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
24, 123
               

               
Conread position:
               
484-710
               

               
Cow position:
               
chr1:35170308-35170085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
60, 34
               

               
Conread position:
               
484-710
               

               
Cow position:
               
chr1:79663695-79663918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
484-710
               

               
Cow position:
               
chr1:91066179-91066400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
27, 120
               

               
Conread position:
               
484-711
               

               
Cow position:
               
chr1:44165056-44164826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
27, 202
               

               
Conread position:
               
484-711
               

               
Cow position:
               
chr1:94212204-94211981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
75, 33
               

               
Conread position:
               
484-711
               

               
Cow position:
               
chr1:102825844-102826066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
27, 42
               

               
Conread position:
               
484-712
               

               
Cow position:
               
chr1:3776644-3776868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
71, 21
               

               
Conread position:
               
484-712
               

               
Cow position:
               
chr1:35162383-35162150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
25, 197
               

               
Conread position:
               
484-714
               

               
Cow position:
               
chr1:53423657-53423423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
27, 232
               

               
Conread position:
               
484-717
               

               
Cow position:
               
chr1:57575787-57576022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
16, 143
               

               
Conread position:
               
484-721
               

               
Cow position:
               
chr1:6941437-6941202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
27, 85
               

               
Conread position:
               
484-721
               

               
Cow position:
               
chr1:6958850-6958615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
27, 85
               

               
Conread position:
               
484-721
               

               
Cow position:
               
chr1:57247406-57247172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
60, 31
               

               
Conread position:
               
484-722
               

               
Cow position:
               
chr1:12871039-12871272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
71, 105
               

               
Conread position:
               
484-722
               

               
Cow position:
               
chr1:37309544-37309769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
67, 28
               

               
Conread position:
               
484-722
               

               
Cow position:
               
chr1:45007438-45007202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
83, 31
               

               
Conread position:
               
484-781
               

               
Cow position:
               
chr1:68826931-68827230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
27, 74
               

               
Conread position:
               
487-646
               

               
Cow position:
               
chr1:33206905-33207063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
68, 26
               

               
Conread position:
               
487-658
               

               
Cow position:
               
chr1:95654743-95654916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
24, 44
               

               
Conread position:
               
487-677
               

               
Cow position:
               
chr1:11729152-11728958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
487-699
               

               
Cow position:
               
chr1:36874984-36874774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
24, 116
               

               
Conread position:
               
487-701
               

               
Cow position:
               
chr1:82406582-82406796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
26, 56
               

               
Conread position:
               
487-706
               

               
Cow position:
               
chr1:15311840-15311620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
24, 57
               

               
Conread position:
               
487-706
               

               
Cow position:
               
chr1:68951598-68951384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
24, 117
               

               
Conread position:
               
487-707
               

               
Cow position:
               
chr1:89509953-89510181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
18, 204
               

               
Conread position:
               
487-708
               

               
Cow position:
               
chr1:1981144-1981360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
24, 54
               

               
Conread position:
               
487-708
               

               
Cow position:
               
chr1:42138827-42138615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
67, 27
               

               
Conread position:
               
487-709
               

               
Cow position:
               
chr1:85361831-85361604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
24, 44
               

               
Conread position:
               
487-710
               

               
Cow position:
               
chr1:731971-732177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
68, 26
               

               
Conread position:
               
487-710
               

               
Cow position:
               
chr1:1878000-1877775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
24, 47
               

               
Conread position:
               
487-710
               

               
Cow position:
               
chr1:41056649-41056432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
7, 30
               

               
Conread position:
               
487-710
               

               
Cow position:
               
chr1:61005588-61005818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
487-710
               

               
Cow position:
               
chr1:61741999-61742220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
22, 47
               

               
Conread position:
               
487-710
               

               
Cow position:
               
chr1:62964246-62964027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
25, 50
               

               
Conread position:
               
487-710
               

               
Cow position:
               
chr1:79591078-79590848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
487-710
               

               
Cow position:
               
chr1:84240863-84240648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
21, 105
               

               
Conread position:
               
487-710
               

               
Cow position:
               
chr1:95215210-95215438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
487-711
               

               
Cow position:
               
chr1:10778536-10778321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
23, 104
               

               
Conread position:
               
487-711
               

               
Cow position:
               
chr1:22729022-22728794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
487-711
               

               
Cow position:
               
chr1:49795971-49795747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
196, 33
               

               
Conread position:
               
487-711
               

               
Cow position:
               
chr1:60032627-60032851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
24, 118
               

               
Conread position:
               
487-711
               

               
Cow position:
               
chr1:100421803-100421590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
24, 82
               

               
Conread position:
               
487-712
               

               
Cow position:
               
chr1:36932128-36931905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
23, 125
               

               
Conread position:
               
487-712
               

               
Cow position:
               
chr1:50931006-50931223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
24, 41
               

               
Conread position:
               
487-717
               

               
Cow position:
               
chr1:51394388-51394160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
11, 30
               

               
Conread position:
               
487-717
               

               
Cow position:
               
chr1:85774425-85774200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
67, 31
               

               
Conread position:
               
487-718
               

               
Cow position:
               
chr1:95100928-95100703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
25, 54
               

               
Conread position:
               
487-718
               

               
Cow position:
               
chr1:101822531-101822756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
24, 111
               

               
Conread position:
               
487-721
               

               
Cow position:
               
chr1:68817828-68818060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
22, 117
               

               
Conread position:
               
487-721
               

               
Cow position:
               
chr1:70533970-70534198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
57, 23
               

               
Conread position:
               
488-704
               

               
Cow position:
               
chr1:20384651-20384867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
23, 46
               

               
Conread position:
               
488-710
               

               
Cow position:
               
chr1:84283044-84282809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
488-711
               

               
Cow position:
               
chr1:78689906-78689680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
14, 30
               

               
Conread position:
               
488-712
               

               
Cow position:
               
chr1:8532243-8532466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
10, 112
               

               
Conread position:
               
488-722
               

               
Cow position:
               
chr1:100537779-100537547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
23, 39
               

               
Conread position:
               
489-702
               

               
Cow position:
               
chr1:88618564-88618348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
22, 34
               

               
Conread position:
               
489-706
               

               
Cow position:
               
chr1:41252438-41252651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
118, 26
               

               
Conread position:
               
489-709
               

               
Cow position:
               
chr1:16767114-16767336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
22, 69
               

               
Conread position:
               
489-709
               

               
Cow position:
               
chr1:75967400-75967185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
22, 115
               

               
Conread position:
               
489-710
               

               
Cow position:
               
chr1:24235550-24235770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
20, 195
               

               
Conread position:
               
489-710
               

               
Cow position:
               
chr1:29626943-29627167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
22, 109
               

               
Conread position:
               
489-710
               

               
Cow position:
               
chr1:34300581-34300800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
22, 95
               

               
Conread position:
               
489-717
               

               
Cow position:
               
chr1:102647303-102647528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
22, 39
               

               
Conread position:
               
490-678
               

               
Cow position:
               
chr1:98311036-98310840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
490-681
               

               
Cow position:
               
chr1:96472413-96472206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
490-704
               

               
Cow position:
               
chr1:48581100-48580884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
5, 113
               

               
Conread position:
               
490-707
               

               
Cow position:
               
chr1:11853717-11853939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
490-707
               

               
Cow position:
               
chr1:31934480-31934264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
21, 109
               

               
Conread position:
               
490-707
               

               
Cow position:
               
chr1:87888368-87888153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
21, 94
               

               
Conread position:
               
490-707
               

               
Cow position:
               
chr1:99637811-99638029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
21, 67
               

               
Conread position:
               
490-708
               

               
Cow position:
               
chr1:24655929-24655710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
19, 121
               

               
Conread position:
               
490-708
               

               
Cow position:
               
chr1:78030506-78030733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
22, 72
               

               
Conread position:
               
490-709
               

               
Cow position:
               
chr1:21835911-21835697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
21, 66
               

               
Conread position:
               
490-709
               

               
Cow position:
               
chr1:33720086-33719863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
21, 197
               

               
Conread position:
               
490-709
               

               
Cow position:
               
chr1:101634670-101634450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
21, 131
               

               
Conread position:
               
490-710
               

               
Cow position:
               
chr1:8584-8370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
65, 25
               

               
Conread position:
               
490-710
               

               
Cow position:
               
chr1:11873394-11873607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
19, 67
               

               
Conread position:
               
490-710
               

               
Cow position:
               
chr1:22745592-22745375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
21, 95
               

               
Conread position:
               
490-710
               

               
Cow position:
               
chr1:31341081-31341306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
490-710
               

               
Cow position:
               
chr1:81913187-81913404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
490-710
               

               
Cow position:
               
chr1:82884422-82884637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
21, 114
               

               
Conread position:
               
490-710
               

               
Cow position:
               
chr1:93499591-93499370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
19, 40
               

               
Conread position:
               
490-711
               

               
Cow position:
               
chr1:45555332-45555109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
21, 108
               

               
Conread position:
               
490-711
               

               
Cow position:
               
chr1:46939891-46940115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
21, 41
               

               
Conread position:
               
490-711
               

               
Cow position:
               
chr1:48730860-48731081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
21, 39
               

               
Conread position:
               
490-711
               

               
Cow position:
               
chr1:61724054-61724278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
17, 98
               

               
Conread position:
               
490-721
               

               
Cow position:
               
chr1:3137897-3137668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
21, 116
               

               
Conread position:
               
490-721
               

               
Cow position:
               
chr1:57264028-57264250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
21, 106
               

               
Conread position:
               
491-638
               

               
Cow position:
               
chr1:68763717-68763862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
19, 66
               

               
Conread position:
               
491-702
               

               
Cow position:
               
chr1:51445846-51445635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
28, 113
               

               
Conread position:
               
491-709
               

               
Cow position:
               
chr1:99642399-99642621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
20, 100
               

               
Conread position:
               
491-710
               

               
Cow position:
               
chr1:23969071-23969289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
19, 106
               

               
Conread position:
               
491-710
               

               
Cow position:
               
chr1:42053366-42053577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
64, 28
               

               
Conread position:
               
491-711
               

               
Cow position:
               
chr1:56711652-56711871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
20, 126
               

               
Conread position:
               
491-711
               

               
Cow position:
               
chr1:95327184-95327406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
20, 40
               

               
Conread position:
               
492-710
               

               
Cow position:
               
chr1:64251088-64251301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
19, 104
               

               
Conread position:
               
492-710
               

               
Cow position:
               
chr1:97806754-97806540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
18, 117
               

               
Conread position:
               
492-717
               

               
Cow position:
               
chr1:63905506-63905733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
19, 101
               

               
Conread position:
               
493-709
               

               
Cow position:
               
chr1:10115830-10116047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
18, 37
               

               
Conread position:
               
493-717
               

               
Cow position:
               
chr1:5162084-5162312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
18, 144
               

               
Conread position:
               
494-685
               

               
Cow position:
               
chr1:26201183-26200993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
17, 79
               

               
Conread position:
               
494-707
               

               
Cow position:
               
chr1:13548020-13548239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
17, 47
               

               
Conread position:
               
494-709
               

               
Cow position:
               
chr1:1185701-1185488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
61, 21
               

               
Conread position:
               
494-709
               

               
Cow position:
               
chr1:11226281-11226496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
17, 38
               

               
Conread position:
               
494-710
               

               
Cow position:
               
chr1:90864329-90864552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
494-717
               

               
Cow position:
               
chr1:80988309-80988087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
16, 53
               

               
Conread position:
               
495-700
               

               
Cow position:
               
chr1:55229947-55229742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
13, 41
               

               
Conread position:
               
495-708
               

               
Cow position:
               
chr1:42968352-42968566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
15, 50
               

               
Conread position:
               
495-710
               

               
Cow position:
               
chr1:67821248-67821462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
16, 91
               

               
Conread position:
               
495-711
               

               
Cow position:
               
chr1:26895864-26896078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
15, 108
               

               
Conread position:
               
495-717
               

               
Cow position:
               
chr1:89937394-89937622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 70
               

               
Conread position:
               
497-695
               

               
Cow position:
               
chr1:86484926-86484717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
498-685
               

               
Cow position:
               
chr1:53540349-53540163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
57, 17
               

               
Conread position:
               
498-710
               

               
Cow position:
               
chr1:63596096-63596312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
13, 80
               

               
Conread position:
               
498-710
               

               
Cow position:
               
chr1:68217404-68217612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
12, 33
               

               
Conread position:
               
498-710
               

               
Cow position:
               
chr1:71325288-71325499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
12, 107
               

               
Conread position:
               
500-709
               

               
Cow position:
               
chr1:81674022-81673813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
11, 115
               

               
Conread position:
               
500-717
               

               
Cow position:
               
chr1:57572056-57571834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
501-696
               

               
Cow position:
               
chr1:59192685-59192883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
501-702
               

               
Cow position:
               
chr1:4573474-4573275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
54, 16
               

               
Conread position:
               
506-710
               

               
Cow position:
               
chr1:72034976-72035181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
49, 152
               

               
Conread position:
               
506-711
               

               
Cow position:
               
chr1:91733834-91733628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
57, 11
               

               
Conread position:
               
506-711
               

               
Cow position:
               
chr1:98984968-98985176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
57, 11
               

               
Conread position:
               
507-703
               

               
Cow position:
               
chr1:874598-874398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
45, 73
               

               
Conread position:
               
507-710
               

               
Cow position:
               
chr1:7350490-7350286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
507-710
               

               
Cow position:
               
chr1:20125561-20125358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
48, 85
               

               
Conread position:
               
507-716
               

               
Cow position:
               
chr1:72141511-72141306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
46, 97
               

               
Conread position:
               
507-721
               

               
Cow position:
               
chr1:81180026-81180244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
508-665
               

               
Cow position:
               
chr1:43340665-43340830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
508-667
               

               
Cow position:
               
chr1:75382941-75382782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
508-690
               

               
Cow position:
               
chr1:43389104-43389280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
47, 17
               

               
Conread position:
               
508-702
               

               
Cow position:
               
chr1:30504418-30504227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
47, 81
               

               
Conread position:
               
508-704
               

               
Cow position:
               
chr1:58419884-58419686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
508-706
               

               
Cow position:
               
chr1:29671575-29671772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
47, 20
               

               
Conread position:
               
508-706
               

               
Cow position:
               
chr1:31414014-31414206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
47, 86
               

               
Conread position:
               
508-707
               

               
Cow position:
               
chr1:43839475-43839278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
46, 59
               

               
Conread position:
               
508-707
               

               
Cow position:
               
chr1:44136519-44136711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
48, 82
               

               
Conread position:
               
508-707
               

               
Cow position:
               
chr1:53520859-53520657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
25, 93
               

               
Conread position:
               
508-707
               

               
Cow position:
               
chr1:75093446-75093245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
508-708
               

               
Cow position:
               
chr1:61176132-61175933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
47, 34
               

               
Conread position:
               
508-708
               

               
Cow position:
               
chr1:101972996-101973198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
55, 89
               

               
Conread position:
               
508-709
               

               
Cow position:
               
chr1:21093039-21092840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
47, 87
               

               
Conread position:
               
508-709
               

               
Cow position:
               
chr1:57900793-57900992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
47, 30
               

               
Conread position:
               
508-709
               

               
Cow position:
               
chr1:68282748-68282543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
47, 9
               

               
Conread position:
               
508-710
               

               
Cow position:
               
chr1:4027139-4026933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
47, 160
               

               
Conread position:
               
508-710
               

               
Cow position:
               
chr1:4589527-4589733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
46, 78
               

               
Conread position:
               
508-710
               

               
Cow position:
               
chr1:10070895-10071099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
508-710
               

               
Cow position:
               
chr1:22628691-22628891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
47, 94
               

               
Conread position:
               
508-710
               

               
Cow position:
               
chr1:23488560-23488765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
508-710
               

               
Cow position:
               
chr1:31765440-31765647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
47, 181
               

               
Conread position:
               
508-710
               

               
Cow position:
               
chr1:36613328-36613527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
47, 93
               

               
Conread position:
               
508-710
               

               
Cow position:
               
chr1:42256556-42256762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
508-710
               

               
Cow position:
               
chr1:50671028-50670824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
20, 25
               

               
Conread position:
               
508-710
               

               
Cow position:
               
chr1:55260484-55260682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
47, 20
               

               
Conread position:
               
508-710
               

               
Cow position:
               
chr1:57119398-57119594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
53, 32
               

               
Conread position:
               
508-710
               

               
Cow position:
               
chr1:64160287-64160089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
47, 90
               

               
Conread position:
               
508-710
               

               
Cow position:
               
chr1:66491789-66491585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
508-710
               

               
Cow position:
               
chr1:72286110-72286301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
47, 77
               

               
Conread position:
               
508-710
               

               
Cow position:
               
chr1:80336298-80336502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
48, 20
               

               
Conread position:
               
508-710
               

               
Cow position:
               
chr1:82861728-82861521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
508-710
               

               
Cow position:
               
chr1:88971004-88970811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
47, 20
               

               
Conread position:
               
508-710
               

               
Cow position:
               
chr1:89742049-89742264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
508-710
               

               
Cow position:
               
chr1:90604632-90604836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
20, 26
               

               
Conread position:
               
508-710
               

               
Cow position:
               
chr1:92437049-92437243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
46, 20
               

               
Conread position:
               
508-711
               

               
Cow position:
               
chr1:2169572-2169773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
51, 19
               

               
Conread position:
               
508-711
               

               
Cow position:
               
chr1:6200521-6200316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
508-711
               

               
Cow position:
               
chr1:18196808-18196603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
19, 24
               

               
Conread position:
               
508-711
               

               
Cow position:
               
chr1:25177792-25177997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
508-711
               

               
Cow position:
               
chr1:26514403-26514604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
47, 95
               

               
Conread position:
               
508-711
               

               
Cow position:
               
chr1:30530824-30531027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
47, 105
               

               
Conread position:
               
508-711
               

               
Cow position:
               
chr1:47543619-47543418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
46, 105
               

               
Conread position:
               
508-711
               

               
Cow position:
               
chr1:50634454-50634659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
44, 37
               

               
Conread position:
               
508-711
               

               
Cow position:
               
chr1:52354463-52354668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
508-711
               

               
Cow position:
               
chr1:60665444-60665240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
46, 37
               

               
Conread position:
               
508-711
               

               
Cow position:
               
chr1:80870062-80869853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
508-711
               

               
Cow position:
               
chr1:98380625-98380830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
22, 48
               

               
Conread position:
               
508-712
               

               
Cow position:
               
chr1:95035411-95035608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
47, 20
               

               
Conread position:
               
508-715
               

               
Cow position:
               
chr1:33996971-33997169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
508-716
               

               
Cow position:
               
chr1:75744807-75744602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
47, 93
               

               
Conread position:
               
508-717
               

               
Cow position:
               
chr1:61725165-61725372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
508-717
               

               
Cow position:
               
chr1:96964267-96964060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
54, 47
               

               
Conread position:
               
508-736
               

               
Cow position:
               
chr1:97820634-97820406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
54, 20
               

               
Conread position:
               
509-708
               

               
Cow position:
               
chr1:99609314-99609116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
46, 101
               

               
Conread position:
               
509-710
               

               
Cow position:
               
chr1:71257532-71257735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
45, 73
               

               
Conread position:
               
509-710
               

               
Cow position:
               
chr1:84786721-84786519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
50, 175
               

               
Conread position:
               
509-716
               

               
Cow position:
               
chr1:19545153-19545353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
45, 97
               

               
Conread position:
               
509-716
               

               
Cow position:
               
chr1:57639576-57639778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
46, 59
               

               
Conread position:
               
510-710
               

               
Cow position:
               
chr1:56229196-56229002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
45, 83
               

               
Conread position:
               
511-689
               

               
Cow position:
               
chr1:7186739-7186556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
511-702
               

               
Cow position:
               
chr1:3035049-3035237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
45, 90
               

               
Conread position:
               
511-709
               

               
Cow position:
               
chr1:99118333-99118134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
33, 18
               

               
Conread position:
               
511-711
               

               
Cow position:
               
chr1:90095545-90095747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
17, 23
               

               
Conread position:
               
514-688
               

               
Cow position:
               
chr1:92010259-92010083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
514-709
               

               
Cow position:
               
chr1:22827108-22826918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
41, 87
               

               
Conread position:
               
514-709
               

               
Cow position:
               
chr1:23905943-23905744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
32, 21
               

               
Conread position:
               
514-709
               

               
Cow position:
               
chr1:68276354-68276156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
40, 165
               

               
Conread position:
               
514-710
               

               
Cow position:
               
chr1:81363925-81363742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
41, 80
               

               
Conread position:
               
514-711
               

               
Cow position:
               
chr1:27358891-27358690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
515-707
               

               
Cow position:
               
chr1:92197405-92197211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
14, 118
               

               
Conread position:
               
516-686
               

               
Cow position:
               
chr1:55705311-55705482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
516-704
               

               
Cow position:
               
chr1:42887328-42887509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
40, 12
               

               
Conread position:
               
516-704
               

               
Cow position:
               
chr1:51531706-51531527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
39, 79
               

               
Conread position:
               
516-706
               

               
Cow position:
               
chr1:96078307-96078121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
38, 74
               

               
Conread position:
               
516-709
               

               
Cow position:
               
chr1:29429807-29429612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
516-710
               

               
Cow position:
               
chr1:24133120-24133307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
42, 22
               

               
Conread position:
               
516-710
               

               
Cow position:
               
chr1:47008970-47008775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
39, 79
               

               
Conread position:
               
516-710
               

               
Cow position:
               
chr1:55686278-55686471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
39, 155
               

               
Conread position:
               
516-710
               

               
Cow position:
               
chr1:83943407-83943602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
38, 92
               

               
Conread position:
               
516-710
               

               
Cow position:
               
chr1:100800295-100800105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
39, 69
               

               
Conread position:
               
516-711
               

               
Cow position:
               
chr1:13250343-13250540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
12, 17
               

               
Conread position:
               
516-711
               

               
Cow position:
               
chr1:22295494-22295691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
516-711
               

               
Cow position:
               
chr1:36880218-36880025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
46, 39
               

               
Conread position:
               
516-711
               

               
Cow position:
               
chr1:65529960-65530157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
12, 17
               

               
Conread position:
               
516-711
               

               
Cow position:
               
chr1:90914028-90913831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
517-699
               

               
Cow position:
               
chr1:70434941-70434751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
517-708
               

               
Cow position:
               
chr1:13614777-13614969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
38, 11
               

               
Conread position:
               
517-709
               

               
Cow position:
               
chr1:60910289-60910094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
37, 130
               

               
Conread position:
               
517-710
               

               
Cow position:
               
chr1:29519919-29520114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
24, 14
               

               
Conread position:
               
517-710
               

               
Cow position:
               
chr1:52488023-52488210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
37, 86
               

               
Conread position:
               
517-721
               

               
Cow position:
               
chr1:56748532-56748326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
37, 167
               

               
Conread position:
               
518-693
               

               
Cow position:
               
chr1:25886141-25886310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
518-695
               

               
Cow position:
               
chr1:32631404-32631229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
37, 85
               

               
Conread position:
               
518-707
               

               
Cow position:
               
chr1:74013322-74013516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
519-708
               

               
Cow position:
               
chr1:38278098-38278295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
36, 165
               

               
Conread position:
               
519-710
               

               
Cow position:
               
chr1:3757892-3757700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
35, 88
               

               
Conread position:
               
519-710
               

               
Cow position:
               
chr1:70380210-70380398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
36, 82
               

               
Conread position:
               
521-707
               

               
Cow position:
               
chr1:82936652-82936831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
34, 80
               

               
Conread position:
               
521-708
               

               
Cow position:
               
chr1:56073526-56073712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
35, 24
               

               
Conread position:
               
521-709
               

               
Cow position:
               
chr1:69678389-69678573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
34, 20
               

               
Conread position:
               
521-710
               

               
Cow position:
               
chr1:19482145-19482326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
34, 17
               

               
Conread position:
               
521-710
               

               
Cow position:
               
chr1:42874013-42874199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
34, 80
               

               
Conread position:
               
522-702
               

               
Cow position:
               
chr1:98577409-98577231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
33, 11
               

               
Conread position:
               
525-710
               

               
Cow position:
               
chr1:61351083-61350895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
525-717
               

               
Cow position:
               
chr1:96192933-96193133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
77, 152
               

               
Conread position:
               
528-707
               

               
Cow position:
               
chr1:87216388-87216212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
28, 73
               

               
Conread position:
               
528-710
               

               
Cow position:
               
chr1:40062379-40062196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
528-710
               

               
Cow position:
               
chr1:64678628-64678445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
528-712
               

               
Cow position:
               
chr1:1916308-1916490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
28, 81
               

               
Conread position:
               
530-708
               

               
Cow position:
               
chr1:53207761-53207945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
26, 90
               

               
Conread position:
               
530-710
               

               
Cow position:
               
chr1:71691742-71691562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
24, 37
               

               
Conread position:
               
531-710
               

               
Cow position:
               
chr1:81859298-81859479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
35, 148
               

               
Conread position:
               
531-711
               

               
Cow position:
               
chr1:101551388-101551204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
531-735
               

               
Cow position:
               
chr1:99792739-99792532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
532-707
               

               
Cow position:
               
chr1:4618940-4619118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
22, 94
               

               
Conread position:
               
535-696
               

               
Cow position:
               
chr1:62996414-62996257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
11, 5
               

               
Conread position:
               
535-700
               

               
Cow position:
               
chr1:25281756-25281918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
20, 74
               

               
Conread position:
               
535-708
               

               
Cow position:
               
chr1:95071904-95071736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
19, 32
               

               
Conread position:
               
537-711
               

               
Cow position:
               
chr1:635901-636077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
545-708
               

               
Cow position:
               
chr1:54484979-54484818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
10, 35
               

               
Conread position:
               
545-710
               

               
Cow position:
               
chr1:1760359-1760192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
9, 32
               

               
Conread position:
               
546-710
               

               
Cow position:
               
chr1:46886008-46885842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
547-710
               

               
Cow position:
               
chr1:3076489-3076643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
8, 54
               

               
Conread position:
               
547-711
               

               
Cow position:
               
chr1:98494334-98494174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
8, 21
               

               
Conread position:
               
547-720
               

               
Cow position:
               
chr1:3872759-3872589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
8, 54
               

               
Conread position:
               
552-696
               

               
Cow position:
               
chr1:65638111-65637966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
552-702
               

               
Cow position:
               
chr1:99104982-99105126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
552-710
               

               
Cow position:
               
chr1:61304582-61304429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
552-717
               

               
Cow position:
               
chr1:30882415-30882574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
552-721
               

               
Cow position:
               
chr1:52510341-52510507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
167, 56
               

               
Conread position:
               
553-710
               

               
Cow position:
               
chr1:54294756-54294914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
553-710
               

               
Cow position:
               
chr1:81579667-81579511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
136, 70
               

               
Conread position:
               
555-710
               

               
Cow position:
               
chr1:52774622-52774773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
555-717
               

               
Cow position:
               
chr1:56408515-56408354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
557-710
               

               
Cow position:
               
chr1:50765256-50765105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
557-711
               

               
Cow position:
               
chr1:88338596-88338444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
559-705
               

               
Cow position:
               
chr1:91051767-91051914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
560-710
               

               
Cow position:
               
chr1:57956964-57957110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
561-709
               

               
Cow position:
               
chr1:49181951-49181803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
37, 32
               

               
Conread position:
               
561-711
               

               
Cow position:
               
chr1:71666281-71666431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
561-717
               

               
Cow position:
               
chr1:51981124-51980968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
562-710
               

               
Cow position:
               
chr1:100132760-100132616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
563-717
               

               
Cow position:
               
chr1:80183846-80183998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
566-686
               

               
Cow position:
               
chr1:81515131-81515011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
566-710
               

               
Cow position:
               
chr1:2317750-2317891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
74, 125
               

               
Conread position:
               
566-710
               

               
Cow position:
               
chr1:42360159-42360014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
567-710
               

               
Cow position:
               
chr1:72813298-72813163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
568-711
               

               
Cow position:
               
chr1:40292076-40292217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
20, 31
               

               
Conread position:
               
581-707
               

               
Cow position:
               
chr1:37886910-37887036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
588-711
               

               
Cow position:
               
chr1:43822246-43822124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
592-710
               

               
Cow position:
               
chr1:50032510-50032392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
594-710
               

               
Cow position:
               
chr1:20950559-20950443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
594-717
               

               
Cow position:
               
chr1:76938135-76938256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
598-708
               

               
Cow position:
               
chr1:39427121-39427231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
7, 85
               

               
Conread position:
               
603-710
               

               
Cow position:
               
chr1:61149678-61149785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
603-710
               

               
Cow position:
               
chr1:92976787-92976893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
616-710
               

               
Cow position:
               
chr1:37726533-37726627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
95
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
758-924
               

               
Cow position:
               
chr1:61005639-61005805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
28, 23
               

               
Conread position:
               
764-904
               

               
Cow position:
               
chr1:93499543-93499403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
764-913
               

               
Cow position:
               
chr1:49795921-49795776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
764-920
               

               
Cow position:
               
chr1:99095279-99095128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
29, 64
               

               
Conread position:
               
764-922
               

               
Cow position:
               
chr1:29671602-29671761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
17, 58
               

               
Conread position:
               
764-923
               

               
Cow position:
               
chr1:41004446-41004605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
16, 21
               

               
Conread position:
               
764-923
               

               
Cow position:
               
chr1:81913232-81913390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
764-924
               

               
Cow position:
               
chr1:1956411-1956568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
127, 63
               

               
Conread position:
               
764-924
               

               
Cow position:
               
chr1:22728968-22728808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
17, 30
               

               
Conread position:
               
764-924
               

               
Cow position:
               
chr1:22827084-22826930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
17, 30
               

               
Conread position:
               
764-924
               

               
Cow position:
               
chr1:42874030-42874186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
17, 30
               

               
Conread position:
               
764-924
               

               
Cow position:
               
chr1:43505441-43505284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
764-924
               

               
Cow position:
               
chr1:61564713-61564552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
764-924
               

               
Cow position:
               
chr1:70538524-70538364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
17, 30
               

               
Conread position:
               
764-924
               

               
Cow position:
               
chr1:71253636-71253794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
16, 30
               

               
Conread position:
               
764-924
               

               
Cow position:
               
chr1:75744777-75744621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
17, 30
               

               
Conread position:
               
764-924
               

               
Cow position:
               
chr1:78857404-78857561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
15, 21
               

               
Conread position:
               
764-924
               

               
Cow position:
               
chr1:79844381-79844230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
764-924
               

               
Cow position:
               
chr1:101634621-101634462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
17, 23
               

               
Conread position:
               
765-924
               

               
Cow position:
               
chr1:61391873-61392030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
21, 16
               

               
Conread position:
               
766-918
               

               
Cow position:
               
chr1:97611738-97611886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
150, 61
               

               
Conread position:
               
766-924
               

               
Cow position:
               
chr1:20204943-20204787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
15, 63
               

               
Conread position:
               
766-924
               

               
Cow position:
               
chr1:55686302-55686458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
15, 28
               

               
Conread position:
               
766-924
               

               
Cow position:
               
chr1:61351067-61350908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
766-924
               

               
Cow position:
               
chr1:71257563-71257722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
767-900
               

               
Cow position:
               
chr1:74956107-74956239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
14, 69
               

               
Conread position:
               
767-913
               

               
Cow position:
               
chr1:42138781-42138638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
13, 37
               

               
Conread position:
               
767-914
               

               
Cow position:
               
chr1:19545185-19545329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
24, 11
               

               
Conread position:
               
767-915
               

               
Cow position:
               
chr1:64804188-64804339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
767-917
               

               
Cow position:
               
chr1:49433346-49433497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
23, 57
               

               
Conread position:
               
767-920
               

               
Cow position:
               
chr1:31235013-31235169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
767-920
               

               
Cow position:
               
chr1:49839420-49839271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
5, 15
               

               
Conread position:
               
767-920
               

               
Cow position:
               
chr1:55229899-55229749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
12, 61
               

               
Conread position:
               
767-920
               

               
Cow position:
               
chr1:69678408-69678561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
23, 14
               

               
Conread position:
               
767-921
               

               
Cow position:
               
chr1:4027781-4027625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
767-922
               

               
Cow position:
               
chr1:10655398-10655240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
767-922
               

               
Cow position:
               
chr1:32631381-32631229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 62
               

               
Conread position:
               
767-922
               

               
Cow position:
               
chr1:36874927-36874778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
767-922
               

               
Cow position:
               
chr1:51445794-51445642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
14, 61
               

               
Conread position:
               
767-922
               

               
Cow position:
               
chr1:71818544-71818699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
14, 27
               

               
Conread position:
               
767-922
               

               
Cow position:
               
chr1:79165171-79165329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
767-923
               

               
Cow position:
               
chr1:51531681-51531535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
14, 57
               

               
Conread position:
               
767-923
               

               
Cow position:
               
chr1:56748508-56748352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
13, 140
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:8536-8383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
14, 56
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:1991507-1991667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
14, 27
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:3340855-3340698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
24, 14
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:3776698-3776853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 56
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:6941377-6941227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:6958790-6958640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:11226327-11226484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
13, 139
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:11770376-11770532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
12, 77
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:11913963-11914116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
14, 61
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:13413943-13413788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:15547384-15547230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
14, 62
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:18936915-18937073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:20288032-20287878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:23633990-23634139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
14, 53
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:24655877-24655721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
14, 77
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:25281762-25281915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
14, 27
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:26159514-26159671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:33720033-33719875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
14, 144
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:35162323-35162165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 141
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:39069041-39069190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
14, 27
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:45007384-45007227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
14, 76
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:45288958-45289112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
14, 36
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:45535619-45535463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
21, 14
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:48730911-48731067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
14, 39
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:63596140-63596299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
14, 36
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:68282716-68282555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:69264730-69264583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
18, 14
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:79591021-79590861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:81180060-81180219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:82504888-82504728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
20, 143
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:88618510-88618353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
15, 54
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:90640945-90640786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
14, 142
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:90864379-90864539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
20, 14
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:93528612-93528451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:94212148-94211995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
14, 61
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:95071898-95071747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:95176853-95176696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:95215267-95215425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:97806702-97806553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
27, 14
               

               
Conread position:
               
767-924
               

               
Cow position:
               
chr1:99609282-99609127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
14, 69
               

               
Conread position:
               
768-924
               

               
Cow position:
               
chr1:21835858-21835709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
20, 13
               

               
Conread position:
               
769-924
               

               
Cow position:
               
chr1:41696970-41696818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
21, 12
               

               
Conread position:
               
770-921
               

               
Cow position:
               
chr1:102784874-102784724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
11, 24
               

               
Conread position:
               
771-917
               

               
Cow position:
               
chr1:24728924-24729072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
8, 42
               

               
Conread position:
               
771-917
               

               
Cow position:
               
chr1:81569121-81569267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
9, 23
               

               
Conread position:
               
771-922
               

               
Cow position:
               
chr1:54484979-54484831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
17, 10
               

               
Conread position:
               
771-922
               

               
Cow position:
               
chr1:68276323-68276170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
9, 139
               

               
Conread position:
               
771-923
               

               
Cow position:
               
chr1:61735522-61735677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
771-923
               

               
Cow position:
               
chr1:62996404-62996257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
10, 23
               

               
Conread position:
               
771-923
               

               
Cow position:
               
chr1:85361772-85361617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
771-923
               

               
Cow position:
               
chr1:95035442-95035592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
10, 62
               

               
Conread position:
               
771-924
               

               
Cow position:
               
chr1:635104-634952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
10, 59
               

               
Conread position:
               
771-924
               

               
Cow position:
               
chr1:4618953-4619108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
771-924
               

               
Cow position:
               
chr1:7350452-7350299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
771-924
               

               
Cow position:
               
chr1:10115878-10116035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
771-924
               

               
Cow position:
               
chr1:22467842-22467691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
10, 58
               

               
Conread position:
               
771-924
               

               
Cow position:
               
chr1:37707054-37707208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
19, 10
               

               
Conread position:
               
771-924
               

               
Cow position:
               
chr1:48105524-48105673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
9, 23
               

               
Conread position:
               
771-924
               

               
Cow position:
               
chr1:51628585-51628741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
771-924
               

               
Cow position:
               
chr1:51981144-51980988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
771-924
               

               
Cow position:
               
chr1:57637285-57637133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
10, 59
               

               
Conread position:
               
771-924
               

               
Cow position:
               
chr1:63905562-63905713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
17, 10
               

               
Conread position:
               
771-924
               

               
Cow position:
               
chr1:68619023-68619176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
10, 113
               

               
Conread position:
               
771-924
               

               
Cow position:
               
chr1:81613299-81613146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
10, 23
               

               
Conread position:
               
771-924
               

               
Cow position:
               
chr1:88652540-88652392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
10, 23
               

               
Conread position:
               
771-924
               

               
Cow position:
               
chr1:91816858-91817013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
771-924
               

               
Cow position:
               
chr1:98380663-98380816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
10, 45
               

               
Conread position:
               
771-924
               

               
Cow position:
               
chr1:98563073-98562921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
124, 108
               

               
Conread position:
               
772-921
               

               
Cow position:
               
chr1:42968402-42968554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
772-924
               

               
Cow position:
               
chr1:27358859-27358704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
9, 137
               

               
Conread position:
               
772-924
               

               
Cow position:
               
chr1:44506877-44506729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 56
               

               
Conread position:
               
772-924
               

               
Cow position:
               
chr1:46886008-46885855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
772-924
               

               
Cow position:
               
chr1:61176098-61175944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
9, 63
               

               
Conread position:
               
772-924
               

               
Cow position:
               
chr1:71748095-71748246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
9, 76
               

               
Conread position:
               
773-894
               

               
Cow position:
               
chr1:99792723-99792602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
7, 21
               

               
Conread position:
               
773-924
               

               
Cow position:
               
chr1:30504379-30504232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
773-924
               

               
Cow position:
               
chr1:33717136-33716982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
773-924
               

               
Cow position:
               
chr1:57900831-57900980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
8, 21
               

               
Conread position:
               
773-924
               

               
Cow position:
               
chr1:61742060-61742207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
13, 8
               

               
Conread position:
               
773-924
               

               
Cow position:
               
chr1:84786683-84786532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
13, 130
               

               
Conread position:
               
774-924
               

               
Cow position:
               
chr1:52039543-52039398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
5, 20
               

               
Conread position:
               
774-924
               

               
Cow position:
               
chr1:99118296-99118146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
16, 7
               

               
Conread position:
               
775-924
               

               
Cow position:
               
chr1:34159743-34159593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
5, 56
               

               
Conread position:
               
778-922
               

               
Cow position:
               
chr1:86484862-86484717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
778-923
               

               
Cow position:
               
chr1:65638111-65637966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
783-924
               

               
Cow position:
               
chr1:61725211-61725352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
784-924
               

               
Cow position:
               
chr1:81579663-81579524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
132, 66
               

               
Conread position:
               
786-924
               

               
Cow position:
               
chr1:874540-874404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
786-924
               

               
Cow position:
               
chr1:21954323-21954457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
786-924
               

               
Cow position:
               
chr1:31765498-31765634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
786-924
               

               
Cow position:
               
chr1:53520802-53520667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
786-924
               

               
Cow position:
               
chr1:55146699-55146562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
786-924
               

               
Cow position:
               
chr1:56643692-56643828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
786-924
               

               
Cow position:
               
chr1:79663767-79663905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
787-920
               

               
Cow position:
               
chr1:25886180-25886310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
787-921
               

               
Cow position:
               
chr1:54294763-54294898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
787-922
               

               
Cow position:
               
chr1:36932051-36931922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
787-922
               

               
Cow position:
               
chr1:52994921-52994787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
787-923
               

               
Cow position:
               
chr1:31871318-31871182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
787-924
               

               
Cow position:
               
chr1:31414067-31414197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
787-924
               

               
Cow position:
               
chr1:88338593-88338458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
788-924
               

               
Cow position:
               
chr1:52753273-52753405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
788-924
               

               
Cow position:
               
chr1:71666281-71666417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
788-924
               

               
Cow position:
               
chr1:71691711-71691575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
788-924
               

               
Cow position:
               
chr1:82861671-82861534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
788-924
               

               
Cow position:
               
chr1:89395489-89395352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
789-924
               

               
Cow position:
               
chr1:64678593-64678458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
789-924
               

               
Cow position:
               
chr1:69539589-69539460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
789-924
               

               
Cow position:
               
chr1:100537708-100537571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
790-923
               

               
Cow position:
               
chr1:84812042-84812175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
791-922
               

               
Cow position:
               
chr1:80336353-80336485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
791-924
               

               
Cow position:
               
chr1:29935488-29935620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
791-924
               

               
Cow position:
               
chr1:55163815-55163683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
791-924
               

               
Cow position:
               
chr1:57698560-57698695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
793-923
               

               
Cow position:
               
chr1:86113523-86113651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
795-924
               

               
Cow position:
               
chr1:3323747-3323619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
799-920
               

               
Cow position:
               
chr1:26934655-26934776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.