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Cow genome map

           
Conread name:
           
Ss1.1-Ova1-OVRM10161A11.5
        

               
Conread position:
               
1-157
               

               
Cow position:
               
chr1:61560805-61560642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chr1:89349884-89350069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr1:81613311-81613515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr1:85550156-85549950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
42, 131
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:85647860-85647649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
14, 24
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chr1:45553322-45553111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
42, 126
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chr1:67688658-67688451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
23, 133
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr1:47233557-47233345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
42, 113
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr1:80841574-80841777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr1:84255685-84255900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr1:98551638-98551854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
42, 182
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr1:50991856-50992068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
42, 33
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr1:71253631-71253420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
8, 14
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr1:90976163-90975948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
168, 0
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr1:7023042-7023280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
54, 20
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr1:69695070-69694831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
52, 103
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr1:73960627-73960860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
42, 111
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr1:33409703-33409435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
50, 72
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr1:62964199-62964456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
197, 21
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr1:64302326-64302062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
21, 27
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr1:89448819-89449088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
42, 229
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr1:100761997-100762264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
47, 68
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr1:43389128-43388863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
42, 10
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr1:69551564-69551288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr1:82880566-82880822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
42, 115
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr1:6941385-6941658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
42, 56
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr1:22525797-22526066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
42, 134
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr1:24581504-24581758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
61, 21
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr1:52467223-52467477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
78, 47
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr1:56477509-56477777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
42, 211
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr1:58754874-58754606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
42, 128
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr1:72011887-72011630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr1:79640369-79640097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr1:81290429-81290696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
42, 14
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr1:82884468-82884184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr1:90621586-90621314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
42, 31
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:71079036-71078765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr1:89381196-89381473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
61, 273
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr1:89510001-89509722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
50, 33
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr1:25383585-25383876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
48, 93
               

               
Conread position:
               
1-279
               

               
Cow position:
               
chr1:54478246-54478524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
42, 211
               

               
Conread position:
               
1-279
               

               
Cow position:
               
chr1:55705328-55705041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
42, 110
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr1:1981193-1980901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
50, 259
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr1:57575837-57575555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
190, 33
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr1:78066618-78066335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
10, 75
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr1:78810961-78811246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
50, 20
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr1:79165163-79164874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
56, 136
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr1:101860567-101860278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
33, 20
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr1:49433339-49433051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
42, 58
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr1:33331166-33330889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
50, 75
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr1:75744782-75745071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
42, 256
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr1:24133137-24132849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
60, 33
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr1:41138210-41137935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
197, 47
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr1:54156810-54156519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
42, 21
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr1:34159759-34160044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
43, 196
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chr1:41696980-41697269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
52, 104
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chr1:68817877-68817586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
58, 47
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chr1:19482157-19481884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
17, 21
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chr1:31934434-31934720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
162, 45
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chr1:40599965-40600246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
40, 173
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chr1:41181767-41182054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
41, 59
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chr1:54258486-54258787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
42, 14
               

               
Conread position:
               
1-291
               

               
Cow position:
               
chr1:8129049-8128760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
56, 166
               

               
Conread position:
               
1-291
               

               
Cow position:
               
chr1:56618729-56618436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
42, 144
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr1:43505446-43505743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
42, 276
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr1:90904832-90904532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
49, 70
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr1:101632417-101632123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
42, 214
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr1:56225388-56225690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
50, 258
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr1:70538529-70538832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr1:78857400-78857099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
180, 44
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr1:20667820-20667524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
55, 129
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr1:86110809-86110520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
197, 46
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr1:42398272-42397964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
42, 172
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr1:78794303-78794010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
285, 47
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr1:22728973-22729278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
41, 266
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr1:98583679-98583976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
106, 62
               

               
Conread position:
               
1-301
               

               
Cow position:
               
chr1:84812022-84811711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
5, 285
               

               
Conread position:
               
1-301
               

               
Cow position:
               
chr1:88913240-88913550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
50, 137
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr1:65028453-65028747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
42, 187
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr1:86682640-86682339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
47, 167
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr1:72068917-72068594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
42, 293
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr1:20104190-20104519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
55, 166
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr1:102306222-102305901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
7, 105
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr1:42175646-42175982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
54, 82
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr1:91023546-91023218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
41, 113
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chr1:78838720-78839144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
42, 15
               

               
Conread position:
               
2-208
               

               
Cow position:
               
chr1:62036726-62036937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
41, 20
               

               
Conread position:
               
2-253
               

               
Cow position:
               
chr1:53397908-53398155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
190, 45
               

               
Conread position:
               
2-260
               

               
Cow position:
               
chr1:93528621-93528883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
14, 24
               

               
Conread position:
               
2-262
               

               
Cow position:
               
chr1:85028875-85029127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
58, 196
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr1:26934344-26934076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
40, 63
               

               
Conread position:
               
2-280
               

               
Cow position:
               
chr1:68855085-68855375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
2-280
               

               
Cow position:
               
chr1:83072360-83072648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
52, 275
               

               
Conread position:
               
2-280
               

               
Cow position:
               
chr1:97954542-97954275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
52, 61
               

               
Conread position:
               
2-289
               

               
Cow position:
               
chr1:72304454-72304181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
260, 42
               

               
Conread position:
               
2-289
               

               
Cow position:
               
chr1:78096847-78097143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
41, 278
               

               
Conread position:
               
2-289
               

               
Cow position:
               
chr1:82936669-82936387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
2-292
               

               
Cow position:
               
chr1:53622883-53623178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
41, 23
               

               
Conread position:
               
2-292
               

               
Cow position:
               
chr1:64678618-64678899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
50, 183
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chr1:89388260-89388568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr1:74822373-74822578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
3-241
               

               
Cow position:
               
chr1:25281737-25281496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
39, 199
               

               
Conread position:
               
3-248
               

               
Cow position:
               
chr1:13637741-13637488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
40, 165
               

               
Conread position:
               
3-260
               

               
Cow position:
               
chr1:37322078-37321821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
40, 119
               

               
Conread position:
               
3-262
               

               
Cow position:
               
chr1:17196706-17196434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
40, 103
               

               
Conread position:
               
3-262
               

               
Cow position:
               
chr1:97090249-97090508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
25, 12
               

               
Conread position:
               
3-263
               

               
Cow position:
               
chr1:12464742-12464473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
3-263
               

               
Cow position:
               
chr1:82513432-82513160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
39, 182
               

               
Conread position:
               
3-280
               

               
Cow position:
               
chr1:3923871-3923596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
185, 33
               

               
Conread position:
               
3-289
               

               
Cow position:
               
chr1:53452466-53452742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
24, 40
               

               
Conread position:
               
3-289
               

               
Cow position:
               
chr1:64572437-64572730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
40, 203
               

               
Conread position:
               
3-291
               

               
Cow position:
               
chr1:69678405-69678104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
47, 286
               

               
Conread position:
               
3-291
               

               
Cow position:
               
chr1:77232650-77232354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
150, 48
               

               
Conread position:
               
3-291
               

               
Cow position:
               
chr1:102753776-102754071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
40, 223
               

               
Conread position:
               
3-303
               

               
Cow position:
               
chr1:56225711-56226010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
33, 266
               

               
Conread position:
               
3-305
               

               
Cow position:
               
chr1:65318500-65318812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
47, 152
               

               
Conread position:
               
3-308
               

               
Cow position:
               
chr1:55429037-55428716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
3-313
               

               
Cow position:
               
chr1:61884837-61885154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
40, 19
               

               
Conread position:
               
3-396
               

               
Cow position:
               
chr1:42887343-42886948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
192, 45
               

               
Conread position:
               
4-288
               

               
Cow position:
               
chr1:35671466-35671752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
20, 64
               

               
Conread position:
               
5-276
               

               
Cow position:
               
chr1:10632974-10633245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
33, 189
               

               
Conread position:
               
5-280
               

               
Cow position:
               
chr1:93499550-93499828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
63, 20
               

               
Conread position:
               
9-259
               

               
Cow position:
               
chr1:89158200-89157942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
10-263
               

               
Cow position:
               
chr1:45223510-45223768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
11-289
               

               
Cow position:
               
chr1:101507291-101507567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
25, 10
               

               
Conread position:
               
11-299
               

               
Cow position:
               
chr1:48618307-48618019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
32, 7
               

               
Conread position:
               
16-262
               

               
Cow position:
               
chr1:79003910-79004167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
27, 120
               

               
Conread position:
               
17-231
               

               
Cow position:
               
chr1:52039570-52039793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
25, 114
               

               
Conread position:
               
17-234
               

               
Cow position:
               
chr1:3965777-3965999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
175, 79
               

               
Conread position:
               
17-262
               

               
Cow position:
               
chr1:49317558-49317310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
24, 113
               

               
Conread position:
               
17-264
               

               
Cow position:
               
chr1:48206598-48206347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
48, 30
               

               
Conread position:
               
17-295
               

               
Cow position:
               
chr1:100852656-100852924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
175, 39
               

               
Conread position:
               
18-282
               

               
Cow position:
               
chr1:5597271-5597001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
24, 80
               

               
Conread position:
               
18-289
               

               
Cow position:
               
chr1:80584369-80584648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
22-261
               

               
Cow position:
               
chr1:79146879-79146624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
11, 120
               

               
Conread position:
               
22-274
               

               
Cow position:
               
chr1:64113852-64113597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
20, 179
               

               
Conread position:
               
22-297
               

               
Cow position:
               
chr1:73545965-73545684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
38, 22
               

               
Conread position:
               
23-251
               

               
Cow position:
               
chr1:87197759-87198000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
23-263
               

               
Cow position:
               
chr1:101714057-101714308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
19, 99
               

               
Conread position:
               
23-279
               

               
Cow position:
               
chr1:41056620-41056886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
28, 248
               

               
Conread position:
               
23-287
               

               
Cow position:
               
chr1:52139689-52139412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
28, 224
               

               
Conread position:
               
23-297
               

               
Cow position:
               
chr1:3942267-3941985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
173, 25
               

               
Conread position:
               
23-303
               

               
Cow position:
               
chr1:54267990-54267708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
27, 21
               

               
Conread position:
               
23-318
               

               
Cow position:
               
chr1:29935443-29935145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
19, 67
               

               
Conread position:
               
25-263
               

               
Cow position:
               
chr1:95072275-95072535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
25-263
               

               
Cow position:
               
chr1:97303299-97303061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
98, 19
               

               
Conread position:
               
25-289
               

               
Cow position:
               
chr1:70175596-70175323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
25-295
               

               
Cow position:
               
chr1:46143517-46143242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
18, 102
               

               
Conread position:
               
25-298
               

               
Cow position:
               
chr1:96964266-96964547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
30, 86
               

               
Conread position:
               
36-261
               

               
Cow position:
               
chr1:98030884-98031105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
36-263
               

               
Cow position:
               
chr1:54206853-54206627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
147, 7
               

               
Conread position:
               
36-263
               

               
Cow position:
               
chr1:101634671-101634891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
21, 48
               

               
Conread position:
               
40-278
               

               
Cow position:
               
chr1:81481418-81481176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
40-285
               

               
Cow position:
               
chr1:98911974-98912225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
140, 8
               

               
Conread position:
               
42-273
               

               
Cow position:
               
chr1:71295331-71295097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
9, 165
               

               
Conread position:
               
42-274
               

               
Cow position:
               
chr1:33775676-33775436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
79, 9
               

               
Conread position:
               
42-288
               

               
Cow position:
               
chr1:89158733-89158487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
27, 10
               

               
Conread position:
               
43-263
               

               
Cow position:
               
chr1:67654352-67654133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
152, 13
               

               
Conread position:
               
45-260
               

               
Cow position:
               
chr1:31256252-31256041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
188, 20
               

               
Conread position:
               
45-291
               

               
Cow position:
               
chr1:85771977-85772226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
6, 136
               

               
Conread position:
               
46-263
               

               
Cow position:
               
chr1:6731151-6731371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
134, 30
               

               
Conread position:
               
46-285
               

               
Cow position:
               
chr1:83025192-83024950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
104, 12
               

               
Conread position:
               
46-309
               

               
Cow position:
               
chr1:197035-196767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
141, 223
               

               
Conread position:
               
47-263
               

               
Cow position:
               
chr1:73721331-73721556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
124, 138
               

               
Conread position:
               
47-269
               

               
Cow position:
               
chr1:62034862-62034637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
10, 100
               

               
Conread position:
               
47-294
               

               
Cow position:
               
chr1:8287660-8287409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
11, 107
               

               
Conread position:
               
47-296
               

               
Cow position:
               
chr1:91066180-91065935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
77, 82
               

               
Conread position:
               
47-312
               

               
Cow position:
               
chr1:72422437-72422164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
116, 93
               

               
Conread position:
               
48-262
               

               
Cow position:
               
chr1:98060026-98060250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
31, 17
               

               
Conread position:
               
48-263
               

               
Cow position:
               
chr1:41027047-41027264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
152, 69
               

               
Conread position:
               
48-291
               

               
Cow position:
               
chr1:500147-500398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
105, 113
               

               
Conread position:
               
48-297
               

               
Cow position:
               
chr1:55229949-55230197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
105, 9
               

               
Conread position:
               
52-289
               

               
Cow position:
               
chr1:96304993-96304751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
54-260
               

               
Cow position:
               
chr1:49980688-49980897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
141, 77
               

               
Conread position:
               
55-288
               

               
Cow position:
               
chr1:24530481-24530716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
141, 29
               

               
Conread position:
               
55-297
               

               
Cow position:
               
chr1:242536-242776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
56-279
               

               
Cow position:
               
chr1:55753235-55753011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
38, 50
               

               
Conread position:
               
56-288
               

               
Cow position:
               
chr1:81569048-81568811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
98, 108
               

               
Conread position:
               
56-289
               

               
Cow position:
               
chr1:93590606-93590373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
141, 193
               

               
Conread position:
               
56-291
               

               
Cow position:
               
chr1:16061024-16060788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
121, 113
               

               
Conread position:
               
58-298
               

               
Cow position:
               
chr1:36998168-36998411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
142, 24
               

               
Conread position:
               
60-279
               

               
Cow position:
               
chr1:45315652-45315423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
63-319
               

               
Cow position:
               
chr1:40212345-40212094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
179, 62
               

               
Conread position:
               
67-278
               

               
Cow position:
               
chr1:102730772-102730550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
68-263
               

               
Cow position:
               
chr1:61011173-61011367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
68-263
               

               
Cow position:
               
chr1:66752637-66752440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
69-290
               

               
Cow position:
               
chr1:68688576-68688798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
69-291
               

               
Cow position:
               
chr1:14567642-14567417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
84, 31
               

               
Conread position:
               
72-287
               

               
Cow position:
               
chr1:43499300-43499094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
76-287
               

               
Cow position:
               
chr1:100573627-100573412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
77-280
               

               
Cow position:
               
chr1:32014199-32014400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
81-263
               

               
Cow position:
               
chr1:71636320-71636136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
29, 90
               

               
Conread position:
               
85-263
               

               
Cow position:
               
chr1:71946075-71945888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
122, 165
               

               
Conread position:
               
85-290
               

               
Cow position:
               
chr1:524817-525025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
85-291
               

               
Cow position:
               
chr1:70483325-70483118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
105, 184
               

               
Conread position:
               
85-327
               

               
Cow position:
               
chr1:55685969-55685725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
106, 185
               

               
Conread position:
               
89-263
               

               
Cow position:
               
chr1:85339400-85339569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
15, 21
               

               
Conread position:
               
90-298
               

               
Cow position:
               
chr1:70416746-70416530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
95-262
               

               
Cow position:
               
chr1:4329881-4329718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
95-291
               

               
Cow position:
               
chr1:62469080-62469278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
105, 27
               

               
Conread position:
               
105-289
               

               
Cow position:
               
chr1:77810730-77810544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
13, 5
               

               
Conread position:
               
109-328
               

               
Cow position:
               
chr1:11708985-11708764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
154, 102
               

               
Conread position:
               
113-291
               

               
Cow position:
               
chr1:80423695-80423510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
115-263
               

               
Cow position:
               
chr1:10470465-10470614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
117-263
               

               
Cow position:
               
chr1:19384415-19384265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
118-268
               

               
Cow position:
               
chr1:91743420-91743266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
36, 43
               

               
Conread position:
               
118-280
               

               
Cow position:
               
chr1:53474198-53474357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
451-882
               

               
Cow position:
               
chr1:56724326-56724763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
133, 122
               

               
Conread position:
               
465-880
               

               
Cow position:
               
chr1:102433849-102433423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
155, 9
               

               
Conread position:
               
466-819
               

               
Cow position:
               
chr1:23052941-23053296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
11, 75
               

               
Conread position:
               
466-844
               

               
Cow position:
               
chr1:82911963-82911572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
166, 51
               

               
Conread position:
               
466-876
               

               
Cow position:
               
chr1:38419864-38420266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 7
               

               
Conread position:
               
466-886
               

               
Cow position:
               
chr1:79635792-79635374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
142, 57
               

               
Conread position:
               
466-888
               

               
Cow position:
               
chr1:38399213-38399603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 86
               

               
Conread position:
               
467-737
               

               
Cow position:
               
chr1:30519789-30520067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
16, 68
               

               
Conread position:
               
467-781
               

               
Cow position:
               
chr1:89430062-89430382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
119, 90
               

               
Conread position:
               
467-800
               

               
Cow position:
               
chr1:41519569-41519236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
147, 29
               

               
Conread position:
               
467-807
               

               
Cow position:
               
chr1:47162436-47162103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
167, 118
               

               
Conread position:
               
467-857
               

               
Cow position:
               
chr1:22905965-22906341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
7, 75
               

               
Conread position:
               
467-859
               

               
Cow position:
               
chr1:57696968-57696574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
49, 86
               

               
Conread position:
               
467-874
               

               
Cow position:
               
chr1:67833939-67833523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
119, 85
               

               
Conread position:
               
467-880
               

               
Cow position:
               
chr1:5503160-5503581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
145, 98
               

               
Conread position:
               
467-882
               

               
Cow position:
               
chr1:4209398-4209827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 92
               

               
Conread position:
               
467-882
               

               
Cow position:
               
chr1:5356318-5356746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
119, 92
               

               
Conread position:
               
467-882
               

               
Cow position:
               
chr1:20525669-20526098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 101
               

               
Conread position:
               
467-882
               

               
Cow position:
               
chr1:20830083-20830514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 102
               

               
Conread position:
               
467-882
               

               
Cow position:
               
chr1:21088623-21089050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
111, 394
               

               
Conread position:
               
467-882
               

               
Cow position:
               
chr1:33852468-33852888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 187
               

               
Conread position:
               
467-882
               

               
Cow position:
               
chr1:39544978-39545406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
162, 92
               

               
Conread position:
               
467-882
               

               
Cow position:
               
chr1:40056296-40056723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
119, 32
               

               
Conread position:
               
467-882
               

               
Cow position:
               
chr1:40683550-40683123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
153, 139
               

               
Conread position:
               
467-882
               

               
Cow position:
               
chr1:53199735-53200164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
123, 112
               

               
Conread position:
               
467-882
               

               
Cow position:
               
chr1:57423642-57423213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 108
               

               
Conread position:
               
467-882
               

               
Cow position:
               
chr1:69767770-69768199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
123, 140
               

               
Conread position:
               
467-882
               

               
Cow position:
               
chr1:81288325-81288754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
117, 112
               

               
Conread position:
               
467-882
               

               
Cow position:
               
chr1:82477166-82477595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
20, 26
               

               
Conread position:
               
467-882
               

               
Cow position:
               
chr1:85792871-85793300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 76
               

               
Conread position:
               
467-882
               

               
Cow position:
               
chr1:86546945-86546518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
121, 111
               

               
Conread position:
               
467-882
               

               
Cow position:
               
chr1:86595302-86594875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
165, 98
               

               
Conread position:
               
467-882
               

               
Cow position:
               
chr1:89495026-89494596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
167, 50
               

               
Conread position:
               
467-882
               

               
Cow position:
               
chr1:91900216-91900641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
123, 133
               

               
Conread position:
               
467-885
               

               
Cow position:
               
chr1:79455762-79455331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 98
               

               
Conread position:
               
467-886
               

               
Cow position:
               
chr1:24652470-24652887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 110
               

               
Conread position:
               
467-886
               

               
Cow position:
               
chr1:25551154-25551587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 98
               

               
Conread position:
               
467-886
               

               
Cow position:
               
chr1:28874269-28874690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 93
               

               
Conread position:
               
467-886
               

               
Cow position:
               
chr1:33552119-33552552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 98
               

               
Conread position:
               
467-886
               

               
Cow position:
               
chr1:33713261-33713694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 85
               

               
Conread position:
               
467-886
               

               
Cow position:
               
chr1:42737638-42738053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 88
               

               
Conread position:
               
467-886
               

               
Cow position:
               
chr1:49972991-49972550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
82, 119
               

               
Conread position:
               
467-886
               

               
Cow position:
               
chr1:52358067-52357636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 222
               

               
Conread position:
               
467-886
               

               
Cow position:
               
chr1:55320888-55320460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
59, 140
               

               
Conread position:
               
467-886
               

               
Cow position:
               
chr1:56143143-56142721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
196, 91
               

               
Conread position:
               
467-886
               

               
Cow position:
               
chr1:63604580-63604148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 111
               

               
Conread position:
               
467-886
               

               
Cow position:
               
chr1:73069874-73069435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
93, 51
               

               
Conread position:
               
467-886
               

               
Cow position:
               
chr1:94660866-94661292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 117
               

               
Conread position:
               
467-886
               

               
Cow position:
               
chr1:98658716-98658298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
147, 9
               

               
Conread position:
               
467-888
               

               
Cow position:
               
chr1:29039233-29039655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
78, 111
               

               
Conread position:
               
467-888
               

               
Cow position:
               
chr1:33897450-33897885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 85
               

               
Conread position:
               
467-888
               

               
Cow position:
               
chr1:46836812-46837249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
150, 57
               

               
Conread position:
               
467-888
               

               
Cow position:
               
chr1:51965468-51965899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 75
               

               
Conread position:
               
467-888
               

               
Cow position:
               
chr1:79111679-79112088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
164, 76
               

               
Conread position:
               
469-696
               

               
Cow position:
               
chr1:44972512-44972729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
133, 7
               

               
Conread position:
               
469-701
               

               
Cow position:
               
chr1:15027546-15027771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
145, 74
               

               
Conread position:
               
469-882
               

               
Cow position:
               
chr1:17011540-17011119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
117, 96
               

               
Conread position:
               
469-882
               

               
Cow position:
               
chr1:80357982-80357551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
163, 96
               

               
Conread position:
               
469-886
               

               
Cow position:
               
chr1:73197830-73197412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 84
               

               
Conread position:
               
469-886
               

               
Cow position:
               
chr1:93855711-93856135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 140
               

               
Conread position:
               
469-887
               

               
Cow position:
               
chr1:99315438-99315836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
8, 45
               

               
Conread position:
               
469-888
               

               
Cow position:
               
chr1:99018815-99018402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 70
               

               
Conread position:
               
472-884
               

               
Cow position:
               
chr1:57135634-57136028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
95, 41
               

               
Conread position:
               
472-888
               

               
Cow position:
               
chr1:72944950-72945358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
5, 186
               

               
Conread position:
               
473-774
               

               
Cow position:
               
chr1:39539759-39539448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
70, 97
               

               
Conread position:
               
473-805
               

               
Cow position:
               
chr1:86611334-86611675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
131, 64
               

               
Conread position:
               
473-888
               

               
Cow position:
               
chr1:38417335-38417754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
40, 49
               

               
Conread position:
               
475-882
               

               
Cow position:
               
chr1:40643436-40643842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
118, 107
               

               
Conread position:
               
475-886
               

               
Cow position:
               
chr1:62243455-62243030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 107
               

               
Conread position:
               
475-888
               

               
Cow position:
               
chr1:13581787-13581369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 90
               

               
Conread position:
               
476-691
               

               
Cow position:
               
chr1:21355244-21355038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
33, 38
               

               
Conread position:
               
476-784
               

               
Cow position:
               
chr1:58177912-58177613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
136, 61
               

               
Conread position:
               
476-813
               

               
Cow position:
               
chr1:3384743-3384412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
145, 43
               

               
Conread position:
               
476-875
               

               
Cow position:
               
chr1:56192963-56192552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
101, 147
               

               
Conread position:
               
476-876
               

               
Cow position:
               
chr1:3934057-3933644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 108
               

               
Conread position:
               
476-880
               

               
Cow position:
               
chr1:8826246-8826671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
75, 99
               

               
Conread position:
               
476-880
               

               
Cow position:
               
chr1:30533820-30533407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 84
               

               
Conread position:
               
476-880
               

               
Cow position:
               
chr1:69404205-69404617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 82
               

               
Conread position:
               
476-880
               

               
Cow position:
               
chr1:72081977-72082374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
145, 67
               

               
Conread position:
               
476-880
               

               
Cow position:
               
chr1:72984682-72985088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 89
               

               
Conread position:
               
476-880
               

               
Cow position:
               
chr1:85779243-85778838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 83
               

               
Conread position:
               
476-882
               

               
Cow position:
               
chr1:29363499-29363914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 102
               

               
Conread position:
               
476-882
               

               
Cow position:
               
chr1:40575411-40575819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
105, 160
               

               
Conread position:
               
476-882
               

               
Cow position:
               
chr1:55275832-55275411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 101
               

               
Conread position:
               
476-882
               

               
Cow position:
               
chr1:57658089-57658513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
108, 102
               

               
Conread position:
               
476-886
               

               
Cow position:
               
chr1:17940573-17940147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
110, 84
               

               
Conread position:
               
476-886
               

               
Cow position:
               
chr1:24443162-24442738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 84
               

               
Conread position:
               
476-886
               

               
Cow position:
               
chr1:26517686-26517266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 84
               

               
Conread position:
               
476-886
               

               
Cow position:
               
chr1:32566724-32566303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
139, 84
               

               
Conread position:
               
476-886
               

               
Cow position:
               
chr1:55777778-55778210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
102, 358
               

               
Conread position:
               
476-886
               

               
Cow position:
               
chr1:62804970-62804552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 89
               

               
Conread position:
               
476-886
               

               
Cow position:
               
chr1:65387521-65387935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 89
               

               
Conread position:
               
476-886
               

               
Cow position:
               
chr1:68606346-68605924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
145, 24
               

               
Conread position:
               
476-886
               

               
Cow position:
               
chr1:72185681-72185257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
154, 64
               

               
Conread position:
               
476-886
               

               
Cow position:
               
chr1:76750766-76750349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 11
               

               
Conread position:
               
476-886
               

               
Cow position:
               
chr1:82922952-82922540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 67
               

               
Conread position:
               
476-886
               

               
Cow position:
               
chr1:88131975-88132399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
154, 84
               

               
Conread position:
               
476-886
               

               
Cow position:
               
chr1:91891920-91891498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
157, 89
               

               
Conread position:
               
476-886
               

               
Cow position:
               
chr1:99914627-99915064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
148, 102
               

               
Conread position:
               
476-888
               

               
Cow position:
               
chr1:31364897-31364478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 108
               

               
Conread position:
               
477-681
               

               
Cow position:
               
chr1:91603696-91603499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
13, 25
               

               
Conread position:
               
477-886
               

               
Cow position:
               
chr1:12061011-12060585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
83, 122
               

               
Conread position:
               
477-888
               

               
Cow position:
               
chr1:30063567-30064003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
87, 54
               

               
Conread position:
               
477-888
               

               
Cow position:
               
chr1:56164750-56165161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
101, 144
               

               
Conread position:
               
477-888
               

               
Cow position:
               
chr1:85532159-85531733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
144, 61
               

               
Conread position:
               
478-882
               

               
Cow position:
               
chr1:40511813-40511402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
156, 22
               

               
Conread position:
               
483-888
               

               
Cow position:
               
chr1:77110857-77110464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
184, 77
               

               
Conread position:
               
488-825
               

               
Cow position:
               
chr1:81777636-81777988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
72, 129
               

               
Conread position:
               
489-833
               

               
Cow position:
               
chr1:18193108-18193468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
141, 53
               

               
Conread position:
               
489-887
               

               
Cow position:
               
chr1:31417291-31416884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
39, 77
               

               
Conread position:
               
489-888
               

               
Cow position:
               
chr1:89733278-89732897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 56
               

               
Conread position:
               
492-882
               

               
Cow position:
               
chr1:77922922-77923327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
92, 85
               

               
Conread position:
               
496-886
               

               
Cow position:
               
chr1:18240997-18240603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
160, 64
               

               
Conread position:
               
496-888
               

               
Cow position:
               
chr1:29412936-29412574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
511-872
               

               
Cow position:
               
chr1:9296152-9295800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
336, 70
               

               
Conread position:
               
515-888
               

               
Cow position:
               
chr1:88387495-88387852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
255, 44
               

               
Conread position:
               
515-888
               

               
Cow position:
               
chr1:93235939-93236316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 37
               

               
Conread position:
               
518-888
               

               
Cow position:
               
chr1:67909786-67910174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
43, 60
               

               
Conread position:
               
542-882
               

               
Cow position:
               
chr1:26584357-26584719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
87, 329
               

               
Conread position:
               
542-888
               

               
Cow position:
               
chr1:34683167-34683518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
30, 102
               

               
Conread position:
               
544-874
               

               
Cow position:
               
chr1:18026491-18026149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
89, 35
               

               
Conread position:
               
545-882
               

               
Cow position:
               
chr1:76703034-76702688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
85, 136
               

               
Conread position:
               
550-875
               

               
Cow position:
               
chr1:76620196-76619867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
83, 213
               

               
Conread position:
               
550-882
               

               
Cow position:
               
chr1:22619387-22619052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
63, 178
               

               
Conread position:
               
550-882
               

               
Cow position:
               
chr1:80445416-80445770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
36, 41
               

               
Conread position:
               
550-888
               

               
Cow position:
               
chr1:7141373-7141017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
84, 77
               

               
Conread position:
               
550-888
               

               
Cow position:
               
chr1:61590915-61590573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 20
               

               
Conread position:
               
552-888
               

               
Cow position:
               
chr1:54407313-54406981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
297, 79
               

               
Conread position:
               
553-880
               

               
Cow position:
               
chr1:53364836-53365154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
76, 63
               

               
Conread position:
               
556-781
               

               
Cow position:
               
chr1:82929140-82928900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
73, 222
               

               
Conread position:
               
557-887
               

               
Cow position:
               
chr1:87969598-87969935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
59, 22
               

               
Conread position:
               
564-876
               

               
Cow position:
               
chr1:67002437-67002768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
22, 27
               

               
Conread position:
               
574-877
               

               
Cow position:
               
chr1:93242790-93243088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
211, 65
               

               
Conread position:
               
581-885
               

               
Cow position:
               
chr1:30074171-30074490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
49, 234
               

               
Conread position:
               
582-886
               

               
Cow position:
               
chr1:74285376-74285056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
39, 204
               

               
Conread position:
               
589-835
               

               
Cow position:
               
chr1:70419077-70418821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
53, 127
               

               
Conread position:
               
599-880
               

               
Cow position:
               
chr1:57365023-57364731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
45, 135
               

               
Conread position:
               
603-880
               

               
Cow position:
               
chr1:81668341-81668063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
20, 103
               

               
Conread position:
               
626-888
               

               
Cow position:
               
chr1:90607528-90607253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
8, 236
               

               
Conread position:
               
628-883
               

               
Cow position:
               
chr1:31193186-31192933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
37, 83
               

               
Conread position:
               
632-794
               

               
Cow position:
               
chr1:91079532-91079364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
632-882
               

               
Cow position:
               
chr1:50210485-50210223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
35, 229
               

               
Conread position:
               
632-882
               

               
Cow position:
               
chr1:59207718-59207460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
16, 225
               

               
Conread position:
               
646-888
               

               
Cow position:
               
chr1:61541673-61541916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
26, 106
               

               
Conread position:
               
657-882
               

               
Cow position:
               
chr1:10723973-10724198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
115, 40
               

               
Conread position:
               
663-882
               

               
Cow position:
               
chr1:9379120-9378899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
109, 188
               

               
Conread position:
               
668-882
               

               
Cow position:
               
chr1:82565515-82565732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
112, 184
               

               
Conread position:
               
675-874
               

               
Cow position:
               
chr1:101013058-101012857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
42, 15
               

               
Conread position:
               
679-888
               

               
Cow position:
               
chr1:33350993-33351194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
106, 71
               

               
Conread position:
               
684-882
               

               
Cow position:
               
chr1:71561327-71561126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
88, 168
               

               
Conread position:
               
689-865
               

               
Cow position:
               
chr1:86508486-86508305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
66, 160
               

               
Conread position:
               
689-886
               

               
Cow position:
               
chr1:89769114-89768918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
83, 69
               

               
Conread position:
               
699-888
               

               
Cow position:
               
chr1:82367209-82367398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
80, 73
               

               
Conread position:
               
704-888
               

               
Cow position:
               
chr1:11859319-11859138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
126, 31
               

               
Conread position:
               
757-888
               

               
Cow position:
               
chr1:27112936-27112807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
29, 0
               
Show alignments to all cow chromosomes.