Cow genome map


           Conread name:
           Ss1.1-Ova1-OVRM10161A11.5
        

               Conread position:
               1-167
               

               Cow position:
               chr28:26922446-26922278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               119
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               1-199
               

               Cow position:
               chr28:7549139-7548936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               115
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               1-209
               

               Cow position:
               chr28:27161407-27161195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               42, 61
               

               Conread position:
               1-210
               

               Cow position:
               chr28:12070156-12070368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               155
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               42, 23
               

               Conread position:
               1-263
               

               Cow position:
               chr28:3914632-3914896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               194
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               50, 121
               

               Conread position:
               1-263
               

               Cow position:
               chr28:5139076-5138808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               189
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               50, 162
               

               Conread position:
               1-263
               

               Cow position:
               chr28:9285453-9285186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               42, 63
               

               Conread position:
               1-263
               

               Cow position:
               chr28:12933810-12933545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               175
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               40, 56
               

               Conread position:
               1-263
               

               Cow position:
               chr28:21868376-21868648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               49, 126
               

               Conread position:
               1-265
               

               Cow position:
               chr28:26743544-26743824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               21, 174
               

               Conread position:
               1-273
               

               Cow position:
               chr28:12430528-12430808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               42, 35
               

               Conread position:
               1-278
               

               Cow position:
               chr28:3011352-3011061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               198
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               45, 133
               

               Conread position:
               1-278
               

               Cow position:
               chr28:26982816-26982530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               189
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               42, 220
               

               Conread position:
               1-279
               

               Cow position:
               chr28:29416794-29416517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               200
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               43, 15
               

               Conread position:
               1-280
               

               Cow position:
               chr28:4834921-4834635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               200
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               42, 20
               

               Conread position:
               1-280
               

               Cow position:
               chr28:13474221-13474507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               197
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               1-285
               

               Cow position:
               chr28:8787460-8787751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               208
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               42, 74
               

               Conread position:
               1-286
               

               Cow position:
               chr28:10053412-10053114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               202
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               42, 179
               

               Conread position:
               1-288
               

               Cow position:
               chr28:11426621-11426329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               42, 185
               

               Conread position:
               1-289
               

               Cow position:
               chr28:1099739-1099462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               42, 15
               

               Conread position:
               1-289
               

               Cow position:
               chr28:20124704-20125000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               47, 217
               

               Conread position:
               1-291
               

               Cow position:
               chr28:4158879-4159185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               216
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               42, 14
               

               Conread position:
               1-291
               

               Cow position:
               chr28:7350578-7350869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               206
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               196, 248
               

               Conread position:
               1-291
               

               Cow position:
               chr28:22345940-22346241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               48, 19
               

               Conread position:
               1-293
               

               Cow position:
               chr28:11585284-11584989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               204
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               42, 198
               

               Conread position:
               1-294
               

               Cow position:
               chr28:3492864-3492562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               55, 104
               

               Conread position:
               1-294
               

               Cow position:
               chr28:4090127-4089841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               204
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               196, 43
               

               Conread position:
               1-296
               

               Cow position:
               chr28:8347652-8347956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               42, 161
               

               Conread position:
               1-300
               

               Cow position:
               chr28:11422895-11422593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               209
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               40, 115
               

               Conread position:
               1-300
               

               Cow position:
               chr28:11884599-11884301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               205
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               68, 223
               

               Conread position:
               1-304
               

               Cow position:
               chr28:5204113-5204419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               47, 247
               

               Conread position:
               1-312
               

               Cow position:
               chr28:22332456-22332770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               217
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               60, 24
               

               Conread position:
               2-277
               

               Cow position:
               chr28:10863865-10863591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               44, 100
               

               Conread position:
               2-278
               

               Cow position:
               chr28:7009055-7008775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               186
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               2-289
               

               Cow position:
               chr28:11829022-11828742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               190, 19
               

               Conread position:
               3-263
               

               Cow position:
               chr28:4181926-4182192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               192
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               57, 44
               

               Conread position:
               3-280
               

               Cow position:
               chr28:19564307-19564027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               39, 12
               

               Conread position:
               3-285
               

               Cow position:
               chr28:24082185-24082483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               203
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               3-288
               

               Cow position:
               chr28:5074587-5074305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               199
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               40, 100
               

               Conread position:
               3-289
               

               Cow position:
               chr28:11866743-11866451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               40, 27
               

               Conread position:
               3-291
               

               Cow position:
               chr28:9099857-9100153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               202
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               40, 117
               

               Conread position:
               3-307
               

               Cow position:
               chr28:24966307-24966626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               219
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               48, 97
               

               Conread position:
               4-187
               

               Cow position:
               chr28:5128808-5128618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               133
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               4-286
               

               Cow position:
               chr28:3740804-3741078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               191
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               4-292
               

               Cow position:
               chr28:10589100-10588816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               39, 170
               

               Conread position:
               4-299
               

               Cow position:
               chr28:16919242-16918946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               201
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               54, 40
               

               Conread position:
               7-209
               

               Cow position:
               chr28:2132000-2131790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               146
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               7-288
               

               Cow position:
               chr28:21844882-21845172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               201
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               36, 81
               

               Conread position:
               7-299
               

               Cow position:
               chr28:5437159-5436857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               209
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               36, 8
               

               Conread position:
               9-280
               

               Cow position:
               chr28:4016461-4016731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               49, 234
               

               Conread position:
               9-291
               

               Cow position:
               chr28:4884335-4884034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               200
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               9-303
               

               Cow position:
               chr28:22813189-22813476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               200
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               33, 26
               

               Conread position:
               11-300
               

               Cow position:
               chr28:7619222-7618932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               31, 221
               

               Conread position:
               17-263
               

               Cow position:
               chr28:25056903-25057147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               181
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               34, 147
               

               Conread position:
               17-277
               

               Cow position:
               chr28:14998001-14998269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               174
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               34, 210
               

               Conread position:
               17-288
               

               Cow position:
               chr28:4643831-4643555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               179
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               42, 258
               

               Conread position:
               18-288
               

               Cow position:
               chr28:7132138-7131875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               180, 26
               

               Conread position:
               21-260
               

               Cow position:
               chr28:5684646-5684888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               34, 27
               

               Conread position:
               22-263
               

               Cow position:
               chr28:16346591-16346347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               20, 113
               

               Conread position:
               23-278
               

               Cow position:
               chr28:3411049-3410783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               184
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               20, 179
               

               Conread position:
               23-280
               

               Cow position:
               chr28:16370137-16369882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               187
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               169, 205
               

               Conread position:
               23-282
               

               Cow position:
               chr28:4013029-4013295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               194
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               23-288
               

               Cow position:
               chr28:3445540-3445260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               20, 52
               

               Conread position:
               23-296
               

               Cow position:
               chr28:4070912-4071179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               25, 102
               

               Conread position:
               24-278
               

               Cow position:
               chr28:33884344-33884607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               19, 143
               

               Conread position:
               24-291
               

               Cow position:
               chr28:9636509-9636238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               183
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               169, 32
               

               Conread position:
               25-279
               

               Cow position:
               chr28:11346539-11346282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               168
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               26, 20
               

               Conread position:
               26-263
               

               Cow position:
               chr28:9684387-9684146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               25, 81
               

               Conread position:
               26-287
               

               Cow position:
               chr28:7557777-7557512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               135, 22
               

               Conread position:
               28-263
               

               Cow position:
               chr28:3746151-3746388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               171
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               80, 20
               

               Conread position:
               37-297
               

               Cow position:
               chr28:10615986-10615727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               182
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               9, 21
               

               Conread position:
               40-291
               

               Cow position:
               chr28:777639-777895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               66, 8
               

               Conread position:
               42-286
               

               Cow position:
               chr28:17739790-17740039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               117, 65
               

               Conread position:
               43-263
               

               Cow position:
               chr28:4045816-4046035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               154, 13
               

               Conread position:
               43-280
               

               Cow position:
               chr28:30937701-30937475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               171
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               43-289
               

               Cow position:
               chr28:11816701-11816467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               15, 151
               

               Conread position:
               45-286
               

               Cow position:
               chr28:12991104-12991347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               174
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               57, 154
               

               Conread position:
               46-263
               

               Cow position:
               chr28:6975210-6975425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               107, 119
               

               Conread position:
               48-198
               

               Cow position:
               chr28:16246093-16245945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               110
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               48-291
               

               Cow position:
               chr28:5254846-5255092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               144, 9
               

               Conread position:
               49-288
               

               Cow position:
               chr28:2279617-2279384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               5, 14
               

               Conread position:
               49-295
               

               Cow position:
               chr28:19216793-19217035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               14, 72
               

               Conread position:
               53-291
               

               Cow position:
               chr28:9705629-9705876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               140, 40
               

               Conread position:
               56-263
               

               Cow position:
               chr28:24646572-24646774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               136, 54
               

               Conread position:
               56-302
               

               Cow position:
               chr28:8304226-8304473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               43, 60
               

               Conread position:
               58-263
               

               Cow position:
               chr28:11016389-11016595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               68, 27
               

               Conread position:
               58-297
               

               Cow position:
               chr28:4101501-4101739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               52, 144
               

               Conread position:
               61-263
               

               Cow position:
               chr28:16879557-16879759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               62-293
               

               Cow position:
               chr28:29850830-29850600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               228, 131
               

               Conread position:
               68-303
               

               Cow position:
               chr28:19039028-19038788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               113, 229
               

               Conread position:
               69-285
               

               Cow position:
               chr28:8396327-8396543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               179, 159
               

               Conread position:
               73-350
               

               Cow position:
               chr28:30902122-30902397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               260, 191
               

               Conread position:
               84-263
               

               Cow position:
               chr28:10890728-10890551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               111, 0
               

               Conread position:
               85-288
               

               Cow position:
               chr28:9109224-9109425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               112, 91
               

               Conread position:
               89-290
               

               Cow position:
               chr28:4876455-4876661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               104, 36
               

               Conread position:
               91-278
               

               Cow position:
               chr28:2777544-2777736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               134
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               99-292
               

               Cow position:
               chr28:8936172-8936369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               101-297
               

               Cow position:
               chr28:3678386-3678584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               139
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               109-263
               

               Cow position:
               chr28:26868119-26867963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               121
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               117-309
               

               Cow position:
               chr28:26960869-26960677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               135
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               70, 149
               

               Conread position:
               122-289
               

               Cow position:
               chr28:4866528-4866360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               120
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               52, 46
               

               Conread position:
               127-263
               

               Cow position:
               chr28:24238427-24238293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               106
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               130-283
               

               Cow position:
               chr28:4588371-4588526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               118
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               67, 131
               

               Conread position:
               130-303
               

               Cow position:
               chr28:9069941-9070116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               20, 164
               

               Conread position:
               451-791
               

               Cow position:
               chr28:12648514-12648158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               258
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               22, 78
               

               Conread position:
               456-880
               

               Cow position:
               chr28:13461156-13461582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               292
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               173, 18
               

               Conread position:
               465-886
               

               Cow position:
               chr28:17389590-17390018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 9
               

               Conread position:
               467-752
               

               Cow position:
               chr28:10496344-10496063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               198
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               150, 67
               

               Conread position:
               467-868
               

               Cow position:
               chr28:10460421-10460017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               269
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               177, 117
               

               Conread position:
               467-880
               

               Cow position:
               chr28:783845-784268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 117
               

               Conread position:
               467-880
               

               Cow position:
               chr28:5799481-5799903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               283
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               173, 85
               

               Conread position:
               467-882
               

               Cow position:
               chr28:484407-483981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 92
               

               Conread position:
               467-882
               

               Cow position:
               chr28:1954542-1954968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 76
               

               Conread position:
               467-882
               

               Cow position:
               chr28:5803227-5803633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 92
               

               Conread position:
               467-882
               

               Cow position:
               chr28:7827175-7827594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               301
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               119, 15
               

               Conread position:
               467-882
               

               Cow position:
               chr28:22042099-22041672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               293
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               119, 98
               

               Conread position:
               467-885
               

               Cow position:
               chr28:21566648-21567058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               286
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               171, 111
               

               Conread position:
               467-885
               

               Cow position:
               chr28:24668798-24669214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               277
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               154, 70
               

               Conread position:
               467-886
               

               Cow position:
               chr28:1386209-1385793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 45
               

               Conread position:
               467-886
               

               Cow position:
               chr28:7741630-7742050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 76
               

               Conread position:
               467-886
               

               Cow position:
               chr28:12151495-12151942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               304
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               93, 342
               

               Conread position:
               467-886
               

               Cow position:
               chr28:14704199-14703766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 76
               

               Conread position:
               467-886
               

               Cow position:
               chr28:15034935-15034494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 404
               

               Conread position:
               467-886
               

               Cow position:
               chr28:33253494-33253931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 76
               

               Conread position:
               467-888
               

               Cow position:
               chr28:18146548-18146126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               296
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               161, 6
               

               Conread position:
               469-882
               

               Cow position:
               chr28:9179803-9180223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               281
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               119, 108
               

               Conread position:
               469-882
               

               Cow position:
               chr28:24590047-24590470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 111
               

               Conread position:
               469-886
               

               Cow position:
               chr28:26425064-26424645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 114
               

               Conread position:
               470-875
               

               Cow position:
               chr28:5765923-5766338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               275
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               120, 88
               

               Conread position:
               470-888
               

               Cow position:
               chr28:21360683-21361112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               292
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               147, 63
               

               Conread position:
               473-666
               

               Cow position:
               chr28:25760698-25760884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               156, 18
               

               Conread position:
               476-871
               

               Cow position:
               chr28:32791184-32790794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 79
               

               Conread position:
               476-876
               

               Cow position:
               chr28:22232081-22231681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               277
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               144, 78
               

               Conread position:
               476-882
               

               Cow position:
               chr28:6778744-6778328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               271
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               110, 132
               

               Conread position:
               476-886
               

               Cow position:
               chr28:1166682-1166276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               291
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               148, 57
               

               Conread position:
               476-886
               

               Cow position:
               chr28:1506064-1506483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 79
               

               Conread position:
               476-886
               

               Cow position:
               chr28:3191058-3190635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 89
               

               Conread position:
               476-886
               

               Cow position:
               chr28:5567334-5567741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 67
               

               Conread position:
               476-886
               

               Cow position:
               chr28:5750510-5750086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               286
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               82, 107
               

               Conread position:
               476-886
               

               Cow position:
               chr28:7003194-7003613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               293
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               145, 19
               

               Conread position:
               476-886
               

               Cow position:
               chr28:12409038-12408610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               298
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               84, 41
               

               Conread position:
               476-886
               

               Cow position:
               chr28:17666109-17665690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 84
               

               Conread position:
               476-886
               

               Cow position:
               chr28:18519254-18518830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 64
               

               Conread position:
               476-886
               

               Cow position:
               chr28:22259954-22259537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               293
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               139, 89
               

               Conread position:
               476-886
               

               Cow position:
               chr28:29821193-29821603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               292
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               145, 67
               

               Conread position:
               476-888
               

               Cow position:
               chr28:5938681-5939107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 89
               

               Conread position:
               477-886
               

               Cow position:
               chr28:2085657-2086082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               289
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               83, 107
               

               Conread position:
               479-886
               

               Cow position:
               chr28:5112943-5112507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 399
               

               Conread position:
               482-886
               

               Cow position:
               chr28:1216633-1216218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               274
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               124, 97
               

               Conread position:
               484-753
               

               Cow position:
               chr28:28750186-28750456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               189
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               135, 68
               

               Conread position:
               500-875
               

               Cow position:
               chr28:8719739-8719350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               274
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               117, 52
               

               Conread position:
               516-886
               

               Cow position:
               chr28:10580644-10580257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               268
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               59, 49
               

               Conread position:
               542-888
               

               Cow position:
               chr28:10615735-10615383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               44, 24
               

               Conread position:
               551-886
               

               Cow position:
               chr28:13604020-13604376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 283
               

               Conread position:
               552-866
               

               Cow position:
               chr28:2117244-2117573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               227
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               32, 39
               

               Conread position:
               555-888
               

               Cow position:
               chr28:18100218-18099880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               242
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               560-886
               

               Cow position:
               chr28:34595503-34595849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               235
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               73, 21
               

               Conread position:
               569-882
               

               Cow position:
               chr28:1459373-1459708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               232
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               17, 22
               

               Conread position:
               590-886
               

               Cow position:
               chr28:8380348-8380654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               219
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               45, 26
               

               Conread position:
               591-886
               

               Cow position:
               chr28:1813606-1813316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               177, 57
               

               Conread position:
               594-887
               

               Cow position:
               chr28:8784627-8784930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               222
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               34, 114
               

               Conread position:
               630-886
               

               Cow position:
               chr28:33637902-33638161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               178
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               138, 51
               

               Conread position:
               633-886
               

               Cow position:
               chr28:10471018-10471273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               57, 155
               

               Conread position:
               663-868
               

               Cow position:
               chr28:14752175-14752384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               150
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               22, 190
               

               Conread position:
               683-875
               

               Cow position:
               chr28:6537399-6537204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               97, 165
               

               Conread position:
               726-888
               

               Cow position:
               chr28:11489421-11489258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               107, 52
               
Show alignments to all cow chromosomes.