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Cow genome map

           
Conread name:
           
Ss1.1-Ova1-OVRM10161A11.5
        

               
Conread position:
               
1-152
               

               
Cow position:
               
chr6:61608466-61608622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
1-166
               

               
Cow position:
               
chr6:899335-899169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
1-191
               

               
Cow position:
               
chr6:53651997-53652189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
41, 84
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr6:58597549-58597329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
42, 14
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr6:48112153-48112382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
42, 70
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr6:57571433-57571679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
1-239
               

               
Cow position:
               
chr6:31078917-31078666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
41, 48
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr6:61269265-61269514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr6:26915285-26915538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
40, 119
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr6:46465778-46466041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
51, 112
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr6:65870985-65871254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
41, 153
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr6:22985903-22985638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 25
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr6:63720150-63720416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
46, 162
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr6:4383441-4383699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
207, 46
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr6:2584896-2585167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
15, 25
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr6:9302760-9302497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
55, 116
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr6:15242787-15243065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr6:38853701-38853430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
9, 57
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr6:60118105-60118368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
49, 176
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr6:143414-143151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
42, 20
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr6:46860213-46859943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
42, 66
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr6:68816121-68816397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
39, 87
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr6:13687858-13687575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
42, 26
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr6:16700220-16700495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
68, 46
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr6:47574861-47575131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
42, 213
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr6:8966046-8966330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
41, 202
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr6:54490780-54490503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
42, 132
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr6:18118097-18117804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
42, 112
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr6:33206696-33206974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
22, 57
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr6:55282332-55282037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
145, 47
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chr6:2078865-2078562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chr6:11192512-11192229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
42, 139
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chr6:38640186-38640486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
42, 96
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chr6:60144244-60143948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chr6:94235-93942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
178, 43
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chr6:19292754-19293049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
44, 20
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chr6:51581298-51581004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
42, 21
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chr6:67643736-67643435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
1-291
               

               
Cow position:
               
chr6:7190164-7189877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
40, 192
               

               
Conread position:
               
1-291
               

               
Cow position:
               
chr6:19264541-19264248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
21, 27
               

               
Conread position:
               
1-291
               

               
Cow position:
               
chr6:23695949-23696250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
42, 255
               

               
Conread position:
               
1-291
               

               
Cow position:
               
chr6:29210452-29210731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
42, 61
               

               
Conread position:
               
1-291
               

               
Cow position:
               
chr6:52478459-52478152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr6:60274057-60273752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
17, 34
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr6:60468192-60468486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
42, 128
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr6:62669824-62670132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
53, 24
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr6:8637230-8637533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr6:694192-693884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
55, 15
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr6:54365375-54365066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
42, 190
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr6:24468436-24468138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
104, 68
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr6:26728569-26728270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
42, 14
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr6:59603256-59602938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
42, 197
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr6:32287593-32287911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
42, 147
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr6:23402035-23401713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
42, 127
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr6:31535616-31535283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
23, 19
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr6:60739971-60740303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
42, 310
               

               
Conread position:
               
1-335
               

               
Cow position:
               
chr6:6400906-6401244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
50, 121
               

               
Conread position:
               
2-261
               

               
Cow position:
               
chr6:15305531-15305795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
56, 46
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr6:5609490-5609216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
55, 100
               

               
Conread position:
               
2-289
               

               
Cow position:
               
chr6:7119664-7119381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
40, 192
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr6:21231481-21231764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
41, 59
               

               
Conread position:
               
2-297
               

               
Cow position:
               
chr6:36202778-36203081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
34, 13
               

               
Conread position:
               
3-180
               

               
Cow position:
               
chr6:66375373-66375195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
3-196
               

               
Cow position:
               
chr6:28977087-28976886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
54, 45
               

               
Conread position:
               
3-263
               

               
Cow position:
               
chr6:7128449-7128178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
40, 180
               

               
Conread position:
               
3-263
               

               
Cow position:
               
chr6:49398657-49398403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
3-278
               

               
Cow position:
               
chr6:120202-120481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
40, 108
               

               
Conread position:
               
3-284
               

               
Cow position:
               
chr6:17068692-17068408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
40, 248
               

               
Conread position:
               
3-291
               

               
Cow position:
               
chr6:17414492-17414194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
47, 234
               

               
Conread position:
               
3-291
               

               
Cow position:
               
chr6:53460615-53460320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
40, 272
               

               
Conread position:
               
3-297
               

               
Cow position:
               
chr6:50577481-50577771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
40, 98
               

               
Conread position:
               
3-322
               

               
Cow position:
               
chr6:5330367-5330701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
39, 156
               

               
Conread position:
               
4-291
               

               
Cow position:
               
chr6:67451415-67451118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
39, 252
               

               
Conread position:
               
5-209
               

               
Cow position:
               
chr6:60516786-60516992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
38, 23
               

               
Conread position:
               
5-280
               

               
Cow position:
               
chr6:44078476-44078759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
38, 106
               

               
Conread position:
               
5-289
               

               
Cow position:
               
chr6:47520009-47520306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
7-253
               

               
Cow position:
               
chr6:36921013-36920759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
36, 11
               

               
Conread position:
               
7-288
               

               
Cow position:
               
chr6:44194585-44194305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
48, 20
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr6:35319168-35318882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
43, 26
               

               
Conread position:
               
16-289
               

               
Cow position:
               
chr6:47305306-47305596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
14, 140
               

               
Conread position:
               
17-180
               

               
Cow position:
               
chr6:32853157-32853325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
26, 106
               

               
Conread position:
               
18-279
               

               
Cow position:
               
chr6:66570409-66570665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
36, 182
               

               
Conread position:
               
19-289
               

               
Cow position:
               
chr6:53546010-53546280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
24, 7
               

               
Conread position:
               
23-189
               

               
Cow position:
               
chr6:50976025-50976195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
23-261
               

               
Cow position:
               
chr6:32867237-32866997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
24, 47
               

               
Conread position:
               
23-263
               

               
Cow position:
               
chr6:30023870-30024103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
23-263
               

               
Cow position:
               
chr6:39358371-39358117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
30, 98
               

               
Conread position:
               
23-280
               

               
Cow position:
               
chr6:53024829-53024568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
20, 168
               

               
Conread position:
               
23-283
               

               
Cow position:
               
chr6:34119378-34119119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 100
               

               
Conread position:
               
23-291
               

               
Cow position:
               
chr6:15300849-15300588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
20, 95
               

               
Conread position:
               
23-291
               

               
Cow position:
               
chr6:22850273-22849997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
130, 35
               

               
Conread position:
               
23-291
               

               
Cow position:
               
chr6:48097625-48097348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
31, 233
               

               
Conread position:
               
23-293
               

               
Cow position:
               
chr6:26155128-26155406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
23-294
               

               
Cow position:
               
chr6:61524230-61523946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
19, 251
               

               
Conread position:
               
23-299
               

               
Cow position:
               
chr6:50504430-50504718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
20, 147
               

               
Conread position:
               
23-307
               

               
Cow position:
               
chr6:10106004-10105714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
20, 232
               

               
Conread position:
               
23-317
               

               
Cow position:
               
chr6:32121882-32122174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
20, 146
               

               
Conread position:
               
24-283
               

               
Cow position:
               
chr6:29485064-29485329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
25-262
               

               
Cow position:
               
chr6:45690624-45690393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
25-316
               

               
Cow position:
               
chr6:21293518-21293220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
18, 130
               

               
Conread position:
               
29-263
               

               
Cow position:
               
chr6:58725358-58725593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
168, 19
               

               
Conread position:
               
33-263
               

               
Cow position:
               
chr6:67069827-67069589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
16, 55
               

               
Conread position:
               
40-289
               

               
Cow position:
               
chr6:59438449-59438209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
64, 11
               

               
Conread position:
               
44-288
               

               
Cow position:
               
chr6:63065829-63066090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
90, 12
               

               
Conread position:
               
44-289
               

               
Cow position:
               
chr6:3351031-3351279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
137, 13
               

               
Conread position:
               
44-316
               

               
Cow position:
               
chr6:29775624-29775896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
135, 108
               

               
Conread position:
               
45-180
               

               
Cow position:
               
chr6:20097956-20097821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
45-263
               

               
Cow position:
               
chr6:24031382-24031589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
45-302
               

               
Cow position:
               
chr6:58459724-58459983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
147, 124
               

               
Conread position:
               
45-335
               

               
Cow position:
               
chr6:21470427-21470129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
45-350
               

               
Cow position:
               
chr6:42034774-42035085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
6, 85
               

               
Conread position:
               
47-278
               

               
Cow position:
               
chr6:37395396-37395162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
131, 114
               

               
Conread position:
               
47-288
               

               
Cow position:
               
chr6:60850707-60850949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
146, 9
               

               
Conread position:
               
48-300
               

               
Cow position:
               
chr6:46558065-46558317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
115, 10
               

               
Conread position:
               
48-316
               

               
Cow position:
               
chr6:25615089-25614811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
86, 227
               

               
Conread position:
               
51-263
               

               
Cow position:
               
chr6:1941823-1941608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
30, 18
               

               
Conread position:
               
52-263
               

               
Cow position:
               
chr6:61109797-61110008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
144, 93
               

               
Conread position:
               
52-280
               

               
Cow position:
               
chr6:54127803-54127577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
211, 93
               

               
Conread position:
               
55-298
               

               
Cow position:
               
chr6:2547268-2547522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
56-259
               

               
Cow position:
               
chr6:1871184-1870975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
58-314
               

               
Cow position:
               
chr6:1866748-1867002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
129, 24
               

               
Conread position:
               
73-287
               

               
Cow position:
               
chr6:23938091-23938300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
73-289
               

               
Cow position:
               
chr6:16090934-16091152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
196, 115
               

               
Conread position:
               
75-298
               

               
Cow position:
               
chr6:12761312-12761542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
107, 70
               

               
Conread position:
               
80-261
               

               
Cow position:
               
chr6:21083503-21083317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
88-259
               

               
Cow position:
               
chr6:36537315-36537141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
90-298
               

               
Cow position:
               
chr6:35726142-35726351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
73, 69
               

               
Conread position:
               
93-295
               

               
Cow position:
               
chr6:63168713-63168505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
83, 22
               

               
Conread position:
               
104-263
               

               
Cow position:
               
chr6:54406742-54406577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
12, 152
               

               
Conread position:
               
109-276
               

               
Cow position:
               
chr6:58173416-58173581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
109-301
               

               
Cow position:
               
chr6:37994275-37994467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
22, 104
               

               
Conread position:
               
110-285
               

               
Cow position:
               
chr6:43540182-43540014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
117-295
               

               
Cow position:
               
chr6:4699782-4699964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
117-324
               

               
Cow position:
               
chr6:7291390-7291594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
81, 166
               

               
Conread position:
               
452-887
               

               
Cow position:
               
chr6:25360137-25360582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
17, 76
               

               
Conread position:
               
461-886
               

               
Cow position:
               
chr6:47042109-47041669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
123, 13
               

               
Conread position:
               
466-805
               

               
Cow position:
               
chr6:11273792-11273456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
161, 67
               

               
Conread position:
               
466-886
               

               
Cow position:
               
chr6:51715637-51716073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
154, 43
               

               
Conread position:
               
467-693
               

               
Cow position:
               
chr6:60931797-60932020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
146, 75
               

               
Conread position:
               
467-736
               

               
Cow position:
               
chr6:17244302-17244040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
162, 76
               

               
Conread position:
               
467-738
               

               
Cow position:
               
chr6:9264199-9264481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
117, 76
               

               
Conread position:
               
467-751
               

               
Cow position:
               
chr6:46573888-46574183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
123, 140
               

               
Conread position:
               
467-766
               

               
Cow position:
               
chr6:29312612-29312924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
137, 76
               

               
Conread position:
               
467-767
               

               
Cow position:
               
chr6:13105171-13105482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
78, 103
               

               
Conread position:
               
467-799
               

               
Cow position:
               
chr6:3784878-3785223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
119, 92
               

               
Conread position:
               
467-829
               

               
Cow position:
               
chr6:50646073-50645696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
119, 92
               

               
Conread position:
               
467-859
               

               
Cow position:
               
chr6:17047164-17047573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
112, 285
               

               
Conread position:
               
467-859
               

               
Cow position:
               
chr6:46603135-46602729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
117, 92
               

               
Conread position:
               
467-871
               

               
Cow position:
               
chr6:2375798-2376205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 92
               

               
Conread position:
               
467-880
               

               
Cow position:
               
chr6:1821502-1821092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 93
               

               
Conread position:
               
467-882
               

               
Cow position:
               
chr6:330354-329927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
148, 61
               

               
Conread position:
               
467-882
               

               
Cow position:
               
chr6:2877576-2877147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
123, 140
               

               
Conread position:
               
467-882
               

               
Cow position:
               
chr6:3150374-3150771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
305, 124
               

               
Conread position:
               
467-882
               

               
Cow position:
               
chr6:7140232-7139804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
121, 111
               

               
Conread position:
               
467-882
               

               
Cow position:
               
chr6:13945020-13945449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
98, 122
               

               
Conread position:
               
467-882
               

               
Cow position:
               
chr6:28187712-28187283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 92
               

               
Conread position:
               
467-882
               

               
Cow position:
               
chr6:39910445-39910869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
131, 76
               

               
Conread position:
               
467-882
               

               
Cow position:
               
chr6:40276197-40276619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 64
               

               
Conread position:
               
467-882
               

               
Cow position:
               
chr6:40379523-40379094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 92
               

               
Conread position:
               
467-882
               

               
Cow position:
               
chr6:43618832-43619260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
148, 139
               

               
Conread position:
               
467-882
               

               
Cow position:
               
chr6:44149446-44149012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
119, 62
               

               
Conread position:
               
467-882
               

               
Cow position:
               
chr6:65820862-65820434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
165, 92
               

               
Conread position:
               
467-886
               

               
Cow position:
               
chr6:1535465-1535038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
43, 52
               

               
Conread position:
               
467-886
               

               
Cow position:
               
chr6:10250496-10250067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
17, 94
               

               
Conread position:
               
467-886
               

               
Cow position:
               
chr6:15140066-15139633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 118
               

               
Conread position:
               
467-886
               

               
Cow position:
               
chr6:20559992-20559569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
154, 98
               

               
Conread position:
               
467-886
               

               
Cow position:
               
chr6:25215315-25215758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
93, 117
               

               
Conread position:
               
467-886
               

               
Cow position:
               
chr6:25792647-25792216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 34
               

               
Conread position:
               
467-886
               

               
Cow position:
               
chr6:39333758-39333332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 76
               

               
Conread position:
               
467-886
               

               
Cow position:
               
chr6:40553463-40553040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 222
               

               
Conread position:
               
467-886
               

               
Cow position:
               
chr6:40866213-40865780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 93
               

               
Conread position:
               
467-886
               

               
Cow position:
               
chr6:55542153-55541715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 105
               

               
Conread position:
               
467-888
               

               
Cow position:
               
chr6:1382209-1381797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
149, 76
               

               
Conread position:
               
467-888
               

               
Cow position:
               
chr6:7178178-7177757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 55
               

               
Conread position:
               
467-888
               

               
Cow position:
               
chr6:12665207-12664778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
20, 28
               

               
Conread position:
               
467-888
               

               
Cow position:
               
chr6:15478284-15478713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
25, 302
               

               
Conread position:
               
467-888
               

               
Cow position:
               
chr6:28104749-28104320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
157, 90
               

               
Conread position:
               
467-888
               

               
Cow position:
               
chr6:28170012-28170450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
93, 119
               

               
Conread position:
               
467-888
               

               
Cow position:
               
chr6:34891013-34890584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 99
               

               
Conread position:
               
467-888
               

               
Cow position:
               
chr6:44262366-44261937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
162, 61
               

               
Conread position:
               
467-888
               

               
Cow position:
               
chr6:68028026-68028468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 132
               

               
Conread position:
               
469-865
               

               
Cow position:
               
chr6:7834629-7835003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
202, 83
               

               
Conread position:
               
469-888
               

               
Cow position:
               
chr6:66546600-66547018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 105
               

               
Conread position:
               
470-886
               

               
Cow position:
               
chr6:703328-703752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 111
               

               
Conread position:
               
470-886
               

               
Cow position:
               
chr6:51731194-51731621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 72
               

               
Conread position:
               
473-833
               

               
Cow position:
               
chr6:66193396-66193037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
183, 70
               

               
Conread position:
               
473-886
               

               
Cow position:
               
chr6:66232925-66233340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
138, 70
               

               
Conread position:
               
473-888
               

               
Cow position:
               
chr6:58065854-58066260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
152, 70
               

               
Conread position:
               
475-696
               

               
Cow position:
               
chr6:31636301-31636091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
165, 82
               

               
Conread position:
               
475-888
               

               
Cow position:
               
chr6:8203296-8203732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
70, 108
               

               
Conread position:
               
476-664
               

               
Cow position:
               
chr6:36527421-36527615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
142, 83
               

               
Conread position:
               
476-715
               

               
Cow position:
               
chr6:15278694-15278449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
145, 44
               

               
Conread position:
               
476-737
               

               
Cow position:
               
chr6:13316351-13316077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
154, 45
               

               
Conread position:
               
476-802
               

               
Cow position:
               
chr6:27471699-27472033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
81, 108
               

               
Conread position:
               
476-833
               

               
Cow position:
               
chr6:3276252-3275879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
476-842
               

               
Cow position:
               
chr6:58027794-58028165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
144, 89
               

               
Conread position:
               
476-857
               

               
Cow position:
               
chr6:64717142-64717530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
145, 89
               

               
Conread position:
               
476-864
               

               
Cow position:
               
chr6:51087061-51087458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
154, 33
               

               
Conread position:
               
476-865
               

               
Cow position:
               
chr6:66745116-66745513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
114, 45
               

               
Conread position:
               
476-865
               

               
Cow position:
               
chr6:67265007-67265404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
114, 45
               

               
Conread position:
               
476-874
               

               
Cow position:
               
chr6:65842735-65843146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 33
               

               
Conread position:
               
476-876
               

               
Cow position:
               
chr6:27528877-27528487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
153, 18
               

               
Conread position:
               
476-880
               

               
Cow position:
               
chr6:5948663-5948247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 67
               

               
Conread position:
               
476-880
               

               
Cow position:
               
chr6:21973790-21974205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 89
               

               
Conread position:
               
476-881
               

               
Cow position:
               
chr6:16053227-16053646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
158, 387
               

               
Conread position:
               
476-882
               

               
Cow position:
               
chr6:11871526-11871118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
173, 84
               

               
Conread position:
               
476-882
               

               
Cow position:
               
chr6:13310237-13309842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 76
               

               
Conread position:
               
476-882
               

               
Cow position:
               
chr6:26669744-26669326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
89, 20
               

               
Conread position:
               
476-882
               

               
Cow position:
               
chr6:45587068-45587484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
110, 83
               

               
Conread position:
               
476-885
               

               
Cow position:
               
chr6:10609993-10610393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
147, 84
               

               
Conread position:
               
476-886
               

               
Cow position:
               
chr6:50486-50065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
108, 83
               

               
Conread position:
               
476-886
               

               
Cow position:
               
chr6:3888386-3887975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 79
               

               
Conread position:
               
476-886
               

               
Cow position:
               
chr6:8760175-8759757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
89, 119
               

               
Conread position:
               
476-886
               

               
Cow position:
               
chr6:30273775-30273353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 84
               

               
Conread position:
               
476-886
               

               
Cow position:
               
chr6:35875592-35875170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 107
               

               
Conread position:
               
476-886
               

               
Cow position:
               
chr6:41228565-41228984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 15
               

               
Conread position:
               
476-888
               

               
Cow position:
               
chr6:43792452-43792026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 81
               

               
Conread position:
               
477-839
               

               
Cow position:
               
chr6:15926446-15926078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 98
               

               
Conread position:
               
477-880
               

               
Cow position:
               
chr6:33108336-33107920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
61, 205
               

               
Conread position:
               
477-886
               

               
Cow position:
               
chr6:52694142-52694567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
107, 96
               

               
Conread position:
               
477-887
               

               
Cow position:
               
chr6:10644857-10645261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
209, 66
               

               
Conread position:
               
478-737
               

               
Cow position:
               
chr6:54415493-54415741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
159, 76
               

               
Conread position:
               
478-880
               

               
Cow position:
               
chr6:17597186-17596761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
67, 101
               

               
Conread position:
               
478-886
               

               
Cow position:
               
chr6:58601604-58602020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 74
               

               
Conread position:
               
482-886
               

               
Cow position:
               
chr6:914759-915171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
136, 61
               

               
Conread position:
               
489-876
               

               
Cow position:
               
chr6:28134045-28134435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
95, 53
               

               
Conread position:
               
489-886
               

               
Cow position:
               
chr6:59617243-59617633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
141, 47
               

               
Conread position:
               
495-886
               

               
Cow position:
               
chr6:3487289-3486883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
134, 65
               

               
Conread position:
               
497-722
               

               
Cow position:
               
chr6:87783-88014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
117, 45
               

               
Conread position:
               
502-882
               

               
Cow position:
               
chr6:47048038-47047644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
130, 40
               

               
Conread position:
               
541-888
               

               
Cow position:
               
chr6:47625247-47625604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
141, 31
               

               
Conread position:
               
549-888
               

               
Cow position:
               
chr6:10632732-10633085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 35
               

               
Conread position:
               
550-871
               

               
Cow position:
               
chr6:28766857-28766514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
36, 41
               

               
Conread position:
               
550-882
               

               
Cow position:
               
chr6:28703528-28703173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
36, 41
               

               
Conread position:
               
550-886
               

               
Cow position:
               
chr6:11723989-11723658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
115, 83
               

               
Conread position:
               
550-886
               

               
Cow position:
               
chr6:21835988-21835656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
62, 137
               

               
Conread position:
               
569-882
               

               
Cow position:
               
chr6:44001876-44002208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
52, 274
               

               
Conread position:
               
576-886
               

               
Cow position:
               
chr6:476754-477079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
50, 288
               

               
Conread position:
               
581-888
               

               
Cow position:
               
chr6:12626918-12627245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
17, 288
               

               
Conread position:
               
594-875
               

               
Cow position:
               
chr6:16591215-16591491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
93, 11
               

               
Conread position:
               
605-870
               

               
Cow position:
               
chr6:24262565-24262828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
628-886
               

               
Cow position:
               
chr6:3571871-3572135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
40, 20
               

               
Conread position:
               
637-882
               

               
Cow position:
               
chr6:5749214-5749461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
143, 35
               

               
Conread position:
               
652-880
               

               
Cow position:
               
chr6:13848374-13848603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
38, 192
               

               
Conread position:
               
655-886
               

               
Cow position:
               
chr6:184233-184002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
118, 16
               

               
Conread position:
               
658-808
               

               
Cow position:
               
chr6:16995711-16995862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
122, 24
               

               
Conread position:
               
658-869
               

               
Cow position:
               
chr6:1404005-1403792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
122, 21
               

               
Conread position:
               
658-882
               

               
Cow position:
               
chr6:1410071-1409845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
122, 21
               

               
Conread position:
               
663-880
               

               
Cow position:
               
chr6:24240722-24240939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
109, 137
               

               
Conread position:
               
681-874
               

               
Cow position:
               
chr6:38272903-38273097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
102, 9
               

               
Conread position:
               
692-842
               

               
Cow position:
               
chr6:6659135-6659284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
91, 0
               
Show alignments to all cow chromosomes.