Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10199F02.5 |
| Conread position: | 1-557 |
| Cow position: | chr10:22100995-22101548 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 348 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 229, 36 |
| Conread position: | 1-575 |
| Cow position: | chr10:38847133-38847677 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 375 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 192, 31 |
| Conread position: | 1-599 |
| Cow position: | chr10:37769576-37770184 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 388 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 189, 36 |
| Conread position: | 2-262 |
| Cow position: | chr10:64303217-64302949 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 150, 75 |
| Conread position: | 2-468 |
| Cow position: | chr10:276353-276813 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 315 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 174, 28 |
| Conread position: | 2-482 |
| Cow position: | chr10:10478386-10477903 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 317 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 188, 43 |
| Conread position: | 2-482 |
| Cow position: | chr10:34685651-34686131 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 323 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 33, 44 |
| Conread position: | 2-571 |
| Cow position: | chr10:62778102-62778680 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 24 |
| Conread position: | 2-578 |
| Cow position: | chr10:21400912-21400332 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 371 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 192, 43 |
| Conread position: | 2-578 |
| Cow position: | chr10:32578058-32578627 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 362 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 192, 33 |
| Conread position: | 2-578 |
| Cow position: | chr10:41157211-41157786 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 360 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 192, 28 |
| Conread position: | 2-578 |
| Cow position: | chr10:41566863-41567441 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 376 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 41, 73 |
| Conread position: | 2-578 |
| Cow position: | chr10:41876672-41877257 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 370 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 2-578 |
| Cow position: | chr10:47906535-47907117 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 371 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 192, 33 |
| Conread position: | 2-602 |
| Cow position: | chr10:21076118-21076716 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 71 |
| Conread position: | 2-623 |
| Cow position: | chr10:24978374-24977755 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 19 |
| Conread position: | 3-578 |
| Cow position: | chr10:21740988-21740413 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 365 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 188, 34 |
| Conread position: | 4-482 |
| Cow position: | chr10:19496520-19496048 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 299 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 227, 31 |
| Conread position: | 4-482 |
| Cow position: | chr10:29633102-29632625 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 315 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 96, 31 |
| Conread position: | 8-602 |
| Cow position: | chr10:24299090-24298493 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 380 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 193, 26 |
| Conread position: | 10-578 |
| Cow position: | chr10:14803597-14804175 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 358 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 184, 25 |
| Conread position: | 18-269 |
| Cow position: | chr10:20383768-20383517 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 157, 15 |
| Conread position: | 23-524 |
| Cow position: | chr10:24314051-24313551 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 51 |
| Conread position: | 23-577 |
| Cow position: | chr10:29696014-29696568 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 364 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 15, 59 |
| Conread position: | 37-382 |
| Cow position: | chr10:39881481-39881117 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 150, 36 |
| Conread position: | 40-277 |
| Cow position: | chr10:20396565-20396788 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 42-609 |
| Cow position: | chr10:53363781-53364333 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 31 |
| Conread position: | 50-482 |
| Cow position: | chr10:1375338-1375769 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 290 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 140, 24 |
| Conread position: | 50-482 |
| Cow position: | chr10:19143537-19143100 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 288 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 66, 23 |
| Conread position: | 50-482 |
| Cow position: | chr10:38538692-38538259 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 287 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 158, 24 |
| Conread position: | 50-519 |
| Cow position: | chr10:62216408-62216889 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 318 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 141, 24 |
| Conread position: | 50-557 |
| Cow position: | chr10:19511409-19511924 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 339 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 140, 37 |
| Conread position: | 50-572 |
| Cow position: | chr10:11685862-11685338 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 338 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 144, 28 |
| Conread position: | 50-578 |
| Cow position: | chr10:25565444-25564919 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 335 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 141, 24 |
| Conread position: | 50-578 |
| Cow position: | chr10:32650534-32651073 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 351 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 141, 30 |
| Conread position: | 50-578 |
| Cow position: | chr10:39179585-39180122 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 335 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 144, 24 |
| Conread position: | 50-618 |
| Cow position: | chr10:62409050-62408483 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 24 |
| Conread position: | 51-519 |
| Cow position: | chr10:13366050-13365587 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 314 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 74, 27 |
| Conread position: | 52-437 |
| Cow position: | chr10:32063957-32064342 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 263 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 141, 24 |
| Conread position: | 53-557 |
| Cow position: | chr10:7282878-7282369 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 338 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 137, 21 |
| Conread position: | 54-482 |
| Cow position: | chr10:38345557-38345124 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 274 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 62, 20 |
| Conread position: | 56-557 |
| Cow position: | chr10:8289791-8290296 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 320 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 75, 18 |
| Conread position: | 57-247 |
| Cow position: | chr10:6260955-6260759 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 133, 18 |
| Conread position: | 71-497 |
| Cow position: | chr10:41351932-41351506 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 294 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 42, 60 |
| Conread position: | 78-440 |
| Cow position: | chr10:28116594-28116240 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 255 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 112, 33 |
| Conread position: | 86-572 |
| Cow position: | chr10:184102-184607 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 326 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 104, 27 |
| Conread position: | 198-623 |
| Cow position: | chr10:11820287-11820718 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 122 |
| Conread position: | 280-609 |
| Cow position: | chr10:23431847-23432183 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 244 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 58, 14 |
| Conread position: | 305-623 |
| Cow position: | chr10:6260736-6260412 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 93 |
| Conread position: | 371-608 |
| Cow position: | chr10:20396847-20397079 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 57, 25 |
| Conread position: | 373-643 |
| Cow position: | chr10:39880916-39880635 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 56, 15 |
| Conread position: | 496-615 |
| Cow position: | chr10:24312713-24312589 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 496-623 |
| Cow position: | chr10:64302883-64302756 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 71, 16 |
Show alignments to all cow chromosomes.