Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10199F02.5 |
| Conread position: | 1-482 |
| Cow position: | chr11:72110567-72110089 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 314 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 189, 42 |
| Conread position: | 1-575 |
| Cow position: | chr11:29669237-29668656 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 374 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 186, 36 |
| Conread position: | 2-152 |
| Cow position: | chr11:13068182-13068029 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 114, 38 |
| Conread position: | 2-152 |
| Cow position: | chr11:13161815-13161968 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 114, 38 |
| Conread position: | 2-482 |
| Cow position: | chr11:11987517-11987984 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 302 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 25, 37 |
| Conread position: | 2-482 |
| Cow position: | chr11:17108293-17107810 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 312 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 112, 33 |
| Conread position: | 2-482 |
| Cow position: | chr11:44861132-44860653 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 315 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 24, 45 |
| Conread position: | 2-522 |
| Cow position: | chr11:8262301-8261779 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 344 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 174, 46 |
| Conread position: | 2-571 |
| Cow position: | chr11:37492251-37491676 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 378 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 31, 45 |
| Conread position: | 2-577 |
| Cow position: | chr11:8887752-8887181 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 387 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 174, 19 |
| Conread position: | 2-578 |
| Cow position: | chr11:19064857-19064272 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 357 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 188, 33 |
| Conread position: | 2-578 |
| Cow position: | chr11:32450260-32450844 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 360 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 188, 33 |
| Conread position: | 2-578 |
| Cow position: | chr11:57628654-57628069 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 360 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 188, 33 |
| Conread position: | 2-578 |
| Cow position: | chr11:67847174-67846594 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 368 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 192, 33 |
| Conread position: | 3-571 |
| Cow position: | chr11:87127238-87127808 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 361 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 166, 26 |
| Conread position: | 3-578 |
| Cow position: | chr11:37477718-37477142 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 373 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 191, 28 |
| Conread position: | 4-480 |
| Cow position: | chr11:63660182-63659707 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 301 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 190, 26 |
| Conread position: | 4-519 |
| Cow position: | chr11:28063087-28063597 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 333 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 186, 39 |
| Conread position: | 7-578 |
| Cow position: | chr11:67449893-67450475 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 369 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 40, 68 |
| Conread position: | 9-571 |
| Cow position: | chr11:20921346-20920775 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 351 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 178, 26 |
| Conread position: | 10-275 |
| Cow position: | chr11:7687324-7687589 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 13, 26 |
| Conread position: | 10-457 |
| Cow position: | chr11:15998300-15998744 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 295 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 9, 36 |
| Conread position: | 11-425 |
| Cow position: | chr11:17220810-17220399 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 269 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 105, 24 |
| Conread position: | 11-482 |
| Cow position: | chr11:21466478-21466953 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 318 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 15, 36 |
| Conread position: | 27-387 |
| Cow position: | chr11:10218139-10217783 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 69 |
| Conread position: | 29-377 |
| Cow position: | chr11:32071533-32071878 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 158, 44 |
| Conread position: | 37-638 |
| Cow position: | chr11:36761521-36762118 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 36 |
| Conread position: | 41-637 |
| Cow position: | chr11:44230563-44231152 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 32 |
| Conread position: | 50-283 |
| Cow position: | chr11:8896081-8896317 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 77, 27 |
| Conread position: | 50-482 |
| Cow position: | chr11:23876744-23877178 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 285 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 137, 28 |
| Conread position: | 50-482 |
| Cow position: | chr11:30304689-30305107 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 297 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 140, 24 |
| Conread position: | 50-519 |
| Cow position: | chr11:7113041-7113515 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 307 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 140, 24 |
| Conread position: | 50-571 |
| Cow position: | chr11:12351623-12351095 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 342 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 167, 28 |
| Conread position: | 50-577 |
| Cow position: | chr11:10846884-10847419 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 332 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 140, 28 |
| Conread position: | 50-577 |
| Cow position: | chr11:37093622-37093085 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 345 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 140, 28 |
| Conread position: | 50-577 |
| Cow position: | chr11:41171253-41170715 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 351 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 126, 28 |
| Conread position: | 50-578 |
| Cow position: | chr11:3492452-3492988 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 333 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 144, 25 |
| Conread position: | 50-599 |
| Cow position: | chr11:85394369-85393811 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 365 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 67, 24 |
| Conread position: | 50-602 |
| Cow position: | chr11:43515191-43514628 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 367 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 140, 28 |
| Conread position: | 51-188 |
| Cow position: | chr11:9416239-9416114 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-384 |
| Cow position: | chr11:44895575-44895238 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 124, 21 |
| Conread position: | 52-482 |
| Cow position: | chr11:33044675-33044245 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 286 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 138, 28 |
| Conread position: | 52-522 |
| Cow position: | chr11:43731866-43732328 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 327 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 138, 26 |
| Conread position: | 52-614 |
| Cow position: | chr11:29234203-29233655 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 368 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 140, 21 |
| Conread position: | 53-386 |
| Cow position: | chr11:28050339-28050010 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 112, 25 |
| Conread position: | 57-571 |
| Cow position: | chr11:9607128-9606608 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 327 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 58, 23 |
| Conread position: | 71-424 |
| Cow position: | chr11:50029235-50028883 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 42, 61 |
| Conread position: | 78-571 |
| Cow position: | chr11:39833221-39833722 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 29 |
| Conread position: | 79-506 |
| Cow position: | chr11:14730052-14729623 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 282 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 107, 201 |
| Conread position: | 88-617 |
| Cow position: | chr11:42428816-42429353 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 357 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 102, 77 |
| Conread position: | 92-577 |
| Cow position: | chr11:75919902-75920379 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 323 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 98, 23 |
| Conread position: | 122-480 |
| Cow position: | chr11:10049635-10049994 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 71, 57 |
| Conread position: | 143-461 |
| Cow position: | chr11:13067479-13067167 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 47, 157 |
| Conread position: | 143-461 |
| Cow position: | chr11:13162525-13162837 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 47, 157 |
| Conread position: | 171-390 |
| Cow position: | chr11:62216532-62216315 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 16, 128 |
| Conread position: | 183-577 |
| Cow position: | chr11:37065544-37065143 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 97, 209 |
| Conread position: | 195-516 |
| Cow position: | chr11:9415814-9415512 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 235 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 83, 102 |
| Conread position: | 201-508 |
| Cow position: | chr11:32684886-32685186 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 75, 96 |
| Conread position: | 206-600 |
| Cow position: | chr11:30186902-30187287 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 93 |
| Conread position: | 310-609 |
| Cow position: | chr11:48084818-48085117 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 85 |
| Conread position: | 440-622 |
| Cow position: | chr11:30205089-30205270 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 57, 37 |
| Conread position: | 495-636 |
| Cow position: | chr11:13162847-13162983 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 518-623 |
| Cow position: | chr11:9415226-9415118 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 56, 0 |
Show alignments to all cow chromosomes.