Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10199F02.5 |
| Conread position: | 1-577 |
| Cow position: | chr14:28994521-28993935 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 375 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 115, 42 |
| Conread position: | 1-577 |
| Cow position: | chr14:45712641-45712074 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 382 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 36, 46 |
| Conread position: | 1-602 |
| Cow position: | chr14:37223236-37223839 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 402 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 115, 36 |
| Conread position: | 2-482 |
| Cow position: | chr14:44421893-44422372 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 33 |
| Conread position: | 2-482 |
| Cow position: | chr14:45767344-45767820 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 316 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 185, 19 |
| Conread position: | 2-575 |
| Cow position: | chr14:40339045-40339599 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 372 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 188, 33 |
| Conread position: | 2-577 |
| Cow position: | chr14:11154813-11154247 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 390 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 168, 32 |
| Conread position: | 2-577 |
| Cow position: | chr14:23690886-23690310 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 382 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 18, 25 |
| Conread position: | 2-577 |
| Cow position: | chr14:36967598-36968172 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 376 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 147, 24 |
| Conread position: | 2-577 |
| Cow position: | chr14:44856090-44855510 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 372 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 32, 45 |
| Conread position: | 2-578 |
| Cow position: | chr14:9044900-9045485 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 360 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 188, 33 |
| Conread position: | 2-578 |
| Cow position: | chr14:23256696-23257278 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 380 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 192, 33 |
| Conread position: | 2-578 |
| Cow position: | chr14:45850563-45851140 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 383 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 33, 45 |
| Conread position: | 2-610 |
| Cow position: | chr14:22018742-22019343 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 392 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 111, 41 |
| Conread position: | 3-557 |
| Cow position: | chr14:17684732-17685295 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 364 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 187, 34 |
| Conread position: | 3-571 |
| Cow position: | chr14:44225751-44226309 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 361 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 32, 41 |
| Conread position: | 3-614 |
| Cow position: | chr14:35928518-35929125 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 397 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 86, 18 |
| Conread position: | 4-578 |
| Cow position: | chr14:29048556-29047984 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 364 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 187, 41 |
| Conread position: | 5-482 |
| Cow position: | chr14:16273957-16273477 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 316 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 111, 35 |
| Conread position: | 9-388 |
| Cow position: | chr14:11467941-11468314 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 215, 26 |
| Conread position: | 9-578 |
| Cow position: | chr14:45672703-45672126 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 364 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 178, 26 |
| Conread position: | 12-599 |
| Cow position: | chr14:19328925-19328325 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 383 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 23, 69 |
| Conread position: | 34-577 |
| Cow position: | chr14:13660618-13660067 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 359 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 156, 11 |
| Conread position: | 36-609 |
| Cow position: | chr14:48406298-48405736 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 41 |
| Conread position: | 37-638 |
| Cow position: | chr14:30707303-30706704 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 258 |
| Conread position: | 42-578 |
| Cow position: | chr14:33394402-33393857 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 339 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 148, 32 |
| Conread position: | 43-438 |
| Cow position: | chr14:13272637-13273026 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 133, 31 |
| Conread position: | 49-188 |
| Cow position: | chr14:39722495-39722351 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 49-602 |
| Cow position: | chr14:40170293-40169761 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 362 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 158, 25 |
| Conread position: | 50-482 |
| Cow position: | chr14:7471758-7472192 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 66, 28 |
| Conread position: | 50-482 |
| Cow position: | chr14:16920300-16919872 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 278 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 140, 28 |
| Conread position: | 50-577 |
| Cow position: | chr14:20781838-20782375 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 346 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 140, 28 |
| Conread position: | 50-577 |
| Cow position: | chr14:42151706-42152243 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 346 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 126, 28 |
| Conread position: | 50-577 |
| Cow position: | chr14:47623951-47624472 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 347 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 126, 28 |
| Conread position: | 50-578 |
| Cow position: | chr14:749951-750489 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 332 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 137, 24 |
| Conread position: | 50-578 |
| Cow position: | chr14:14309682-14309156 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 356 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 77, 28 |
| Conread position: | 50-578 |
| Cow position: | chr14:17492075-17491537 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 334 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 140, 28 |
| Conread position: | 51-572 |
| Cow position: | chr14:47654134-47654653 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 22 |
| Conread position: | 52-575 |
| Cow position: | chr14:43552804-43553337 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 26 |
| Conread position: | 74-571 |
| Cow position: | chr14:27992895-27992403 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 344 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 12, 58 |
| Conread position: | 77-639 |
| Cow position: | chr14:38816789-38816223 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 46 |
| Conread position: | 78-314 |
| Cow position: | chr14:33235412-33235648 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 115, 31 |
| Conread position: | 85-188 |
| Cow position: | chr14:9516979-9516876 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 87 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 89-579 |
| Cow position: | chr14:23901381-23900879 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 310 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 98, 186 |
| Conread position: | 89-580 |
| Cow position: | chr14:47589293-47589788 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 337 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 25, 217 |
| Conread position: | 92-614 |
| Cow position: | chr14:43034454-43033941 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 25 |
| Conread position: | 94-482 |
| Cow position: | chr14:2283764-2284157 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 82, 152 |
| Conread position: | 122-617 |
| Cow position: | chr14:13326673-13326187 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 118 |
| Conread position: | 175-565 |
| Cow position: | chr14:42123671-42123293 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 75 |
| Conread position: | 209-575 |
| Cow position: | chr14:37414341-37413972 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 128, 185 |
| Conread position: | 318-482 |
| Cow position: | chr14:13480079-13479916 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 18, 73 |
| Conread position: | 336-575 |
| Cow position: | chr14:38146260-38146491 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 143, 54 |
| Conread position: | 337-615 |
| Cow position: | chr14:32534068-32533807 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 403-575 |
| Cow position: | chr14:9516419-9516248 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 146, 109 |
| Conread position: | 418-636 |
| Cow position: | chr14:34044257-34044053 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 155, 26 |
Show alignments to all cow chromosomes.