Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10199F02.5 |
| Conread position: | 1-410 |
| Cow position: | chr15:324278-324697 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 267 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 19, 81 |
| Conread position: | 1-577 |
| Cow position: | chr15:42490540-42491124 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 363 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 34, 44 |
| Conread position: | 1-599 |
| Cow position: | chr15:4921483-4922094 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 386 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 189, 21 |
| Conread position: | 2-275 |
| Cow position: | chr15:44069129-44069408 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 112, 35 |
| Conread position: | 2-481 |
| Cow position: | chr15:36648250-36648726 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 314 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 87, 33 |
| Conread position: | 2-482 |
| Cow position: | chr15:2648319-2647836 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 308 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 185, 21 |
| Conread position: | 2-482 |
| Cow position: | chr15:4733205-4733678 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 24 |
| Conread position: | 2-497 |
| Cow position: | chr15:2676962-2676473 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 341 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 84, 34 |
| Conread position: | 2-519 |
| Cow position: | chr15:4630572-4630055 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 319 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 9, 36 |
| Conread position: | 2-567 |
| Cow position: | chr15:1771838-1772408 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 363 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 185, 33 |
| Conread position: | 2-571 |
| Cow position: | chr15:1763428-1764003 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 367 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 185, 40 |
| Conread position: | 2-571 |
| Cow position: | chr15:50124597-50124028 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 365 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 192, 19 |
| Conread position: | 2-577 |
| Cow position: | chr15:21960854-21961428 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 19 |
| Conread position: | 2-577 |
| Cow position: | chr15:23157489-23156922 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 43 |
| Conread position: | 2-578 |
| Cow position: | chr15:1519807-1519229 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 368 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 185, 33 |
| Conread position: | 2-578 |
| Cow position: | chr15:20748753-20749336 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 370 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 185, 21 |
| Conread position: | 3-571 |
| Cow position: | chr15:36970266-36970838 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 361 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 184, 34 |
| Conread position: | 4-268 |
| Cow position: | chr15:50144844-50145110 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 186, 31 |
| Conread position: | 4-584 |
| Cow position: | chr15:2006884-2007459 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 384 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 189, 26 |
| Conread position: | 8-432 |
| Cow position: | chr15:10479350-10478927 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 284 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 164, 23 |
| Conread position: | 8-530 |
| Cow position: | chr15:35734803-35735331 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 344 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 193, 27 |
| Conread position: | 8-578 |
| Cow position: | chr15:1781598-1782175 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 374 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 177, 27 |
| Conread position: | 9-275 |
| Cow position: | chr15:7933321-7933583 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 181, 33 |
| Conread position: | 9-482 |
| Cow position: | chr15:24294434-24294911 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 306 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 181, 28 |
| Conread position: | 10-578 |
| Cow position: | chr15:443958-444529 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 362 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 181, 35 |
| Conread position: | 11-167 |
| Cow position: | chr15:32672022-32672174 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 130, 10 |
| Conread position: | 11-622 |
| Cow position: | chr15:4384620-4385226 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 389 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 179, 26 |
| Conread position: | 23-609 |
| Cow position: | chr15:36641988-36642567 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 396 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 11, 18 |
| Conread position: | 23-634 |
| Cow position: | chr15:6621683-6622317 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 416 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 170, 96 |
| Conread position: | 35-367 |
| Cow position: | chr15:496437-496773 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 240 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 95, 10 |
| Conread position: | 37-276 |
| Cow position: | chr15:32286638-32286882 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 37 |
| Conread position: | 42-442 |
| Cow position: | chr15:1253689-1254076 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 285 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 33, 47 |
| Conread position: | 42-482 |
| Cow position: | chr15:22920501-22920945 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 290 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 71, 32 |
| Conread position: | 42-578 |
| Cow position: | chr15:4195838-4196384 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 342 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 145, 32 |
| Conread position: | 50-452 |
| Cow position: | chr15:32680162-32679765 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 140, 34 |
| Conread position: | 50-482 |
| Cow position: | chr15:21666363-21665927 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 276 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 114, 24 |
| Conread position: | 50-482 |
| Cow position: | chr15:51215977-51216408 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 288 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 63, 28 |
| Conread position: | 50-571 |
| Cow position: | chr15:6472527-6472003 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 326 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 66, 28 |
| Conread position: | 50-571 |
| Cow position: | chr15:7233695-7234216 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 339 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 66, 23 |
| Conread position: | 50-577 |
| Cow position: | chr15:4764596-4765125 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 335 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 73, 28 |
| Conread position: | 50-577 |
| Cow position: | chr15:7544263-7544802 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 338 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 137, 23 |
| Conread position: | 50-577 |
| Cow position: | chr15:8749816-8750346 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 339 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 138, 28 |
| Conread position: | 50-577 |
| Cow position: | chr15:15347737-15347199 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 350 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 58, 28 |
| Conread position: | 50-577 |
| Cow position: | chr15:18333444-18332908 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 340 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 140, 28 |
| Conread position: | 50-578 |
| Cow position: | chr15:2011468-2012002 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 344 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 66, 27 |
| Conread position: | 50-578 |
| Cow position: | chr15:18268604-18268066 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 322 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 144, 25 |
| Conread position: | 50-609 |
| Cow position: | chr15:15266271-15265706 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 388 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 67, 23 |
| Conread position: | 51-482 |
| Cow position: | chr15:7788979-7788551 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 23 |
| Conread position: | 51-578 |
| Cow position: | chr15:6078119-6078662 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 354 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 76, 27 |
| Conread position: | 51-610 |
| Cow position: | chr15:40104855-40105417 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 382 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 105, 27 |
| Conread position: | 52-482 |
| Cow position: | chr15:3038135-3037694 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 289 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 63, 26 |
| Conread position: | 53-482 |
| Cow position: | chr15:4170305-4169879 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 138, 21 |
| Conread position: | 60-615 |
| Cow position: | chr15:18023383-18022815 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 17 |
| Conread position: | 70-623 |
| Cow position: | chr15:20357858-20357319 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 408, 58 |
| Conread position: | 88-388 |
| Cow position: | chr15:49676448-49676743 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 102, 52 |
| Conread position: | 88-576 |
| Cow position: | chr15:8407983-8408473 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 329 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 102, 136 |
| Conread position: | 92-571 |
| Cow position: | chr15:29009267-29009753 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 303 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 95, 183 |
| Conread position: | 92-601 |
| Cow position: | chr15:17787733-17787223 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 155 |
| Conread position: | 93-575 |
| Cow position: | chr15:11624345-11624825 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 15 |
| Conread position: | 99-616 |
| Cow position: | chr15:12614497-12615020 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 339 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 23, 200 |
| Conread position: | 103-571 |
| Cow position: | chr15:17219433-17218964 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 323 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 90, 27 |
| Conread position: | 156-637 |
| Cow position: | chr15:32672363-32672869 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 255 |
| Conread position: | 175-614 |
| Cow position: | chr15:11299275-11298862 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 296 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 294, 8 |
| Conread position: | 195-579 |
| Cow position: | chr15:25789433-25789049 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 260 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 85, 123 |
| Conread position: | 208-577 |
| Cow position: | chr15:7922093-7921722 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 90, 103 |
| Conread position: | 237-576 |
| Cow position: | chr15:24715807-24716137 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 226 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 100, 45 |
| Conread position: | 325-577 |
| Cow position: | chr15:10787465-10787208 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 66 |
| Conread position: | 365-623 |
| Cow position: | chr15:30810336-30810593 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 19 |
| Conread position: | 391-622 |
| Cow position: | chr15:498116-498353 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 91, 54 |
| Conread position: | 407-610 |
| Cow position: | chr15:12453161-12453366 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 65, 22 |
Show alignments to all cow chromosomes.