Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10199F02.5 |
| Conread position: | 1-300 |
| Cow position: | chr16:9457517-9457807 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 282, 44 |
| Conread position: | 1-376 |
| Cow position: | chr16:14669284-14669661 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 72 |
| Conread position: | 1-394 |
| Cow position: | chr16:1430216-1430611 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 189, 36 |
| Conread position: | 1-482 |
| Cow position: | chr16:25440603-25441090 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 310 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 29, 81 |
| Conread position: | 1-482 |
| Cow position: | chr16:25458486-25457999 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 313 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 39, 29 |
| Conread position: | 1-557 |
| Cow position: | chr16:25340960-25341517 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 372 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 190, 36 |
| Conread position: | 1-577 |
| Cow position: | chr16:8817116-8816531 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 378 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 189, 36 |
| Conread position: | 1-578 |
| Cow position: | chr16:23982300-23982884 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 374 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 175, 36 |
| Conread position: | 1-599 |
| Cow position: | chr16:29046009-29046619 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 380 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 77, 42 |
| Conread position: | 2-187 |
| Cow position: | chr16:25293591-25293776 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 37, 72 |
| Conread position: | 2-303 |
| Cow position: | chr16:7905633-7905941 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 33, 45 |
| Conread position: | 2-382 |
| Cow position: | chr16:29676315-29675934 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 260 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 33, 44 |
| Conread position: | 2-482 |
| Cow position: | chr16:2239740-2239260 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 303 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 192, 35 |
| Conread position: | 2-482 |
| Cow position: | chr16:6549531-6549052 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 315 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 33, 45 |
| Conread position: | 2-559 |
| Cow position: | chr16:5918475-5919037 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 359 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 185, 20 |
| Conread position: | 2-571 |
| Cow position: | chr16:11052163-11052726 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 368 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 208, 20 |
| Conread position: | 2-578 |
| Cow position: | chr16:6942612-6943205 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 362 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 185, 33 |
| Conread position: | 3-527 |
| Cow position: | chr16:25084612-25085143 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 338 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 48, 35 |
| Conread position: | 4-482 |
| Cow position: | chr16:28171362-28170891 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 316 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 111, 41 |
| Conread position: | 5-546 |
| Cow position: | chr16:25166703-25167204 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 45 |
| Conread position: | 7-610 |
| Cow position: | chr16:42740426-42739817 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 391 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 142, 27 |
| Conread position: | 8-572 |
| Cow position: | chr16:25157220-25156656 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 363 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 183, 32 |
| Conread position: | 10-558 |
| Cow position: | chr16:41559678-41560204 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 362 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 203, 24 |
| Conread position: | 10-636 |
| Cow position: | chr16:47562687-47563330 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 406 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 17, 34 |
| Conread position: | 34-571 |
| Cow position: | chr16:36282422-36282963 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 353 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 92, 11 |
| Conread position: | 37-276 |
| Cow position: | chr16:55080328-55080089 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 139, 36 |
| Conread position: | 37-638 |
| Cow position: | chr16:24155407-24154808 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 36 |
| Conread position: | 37-638 |
| Cow position: | chr16:28438758-28438142 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 36 |
| Conread position: | 45-577 |
| Cow position: | chr16:43898237-43897698 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 345 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 69, 32 |
| Conread position: | 49-557 |
| Cow position: | chr16:23253468-23252955 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 343 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 141, 29 |
| Conread position: | 50-276 |
| Cow position: | chr16:54647363-54647596 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 66, 28 |
| Conread position: | 50-553 |
| Cow position: | chr16:1568413-1567907 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 336 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 66, 24 |
| Conread position: | 50-571 |
| Cow position: | chr16:25187678-25188208 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 323 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 137, 24 |
| Conread position: | 50-577 |
| Cow position: | chr16:20255274-20254738 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 347 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 126, 28 |
| Conread position: | 51-578 |
| Cow position: | chr16:5660898-5661423 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 344 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 139, 23 |
| Conread position: | 53-482 |
| Cow position: | chr16:10808206-10808622 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 287 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 123, 25 |
| Conread position: | 53-519 |
| Cow position: | chr16:56551168-56551637 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 311 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 121, 21 |
| Conread position: | 64-577 |
| Cow position: | chr16:39820688-39821201 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 346 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 123, 50 |
| Conread position: | 70-240 |
| Cow position: | chr16:41758407-41758234 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 120, 48 |
| Conread position: | 88-276 |
| Cow position: | chr16:30047612-30047794 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 88-509 |
| Cow position: | chr16:5651825-5652243 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 292 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 28, 44 |
| Conread position: | 89-372 |
| Cow position: | chr16:29091909-29091621 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 101, 168 |
| Conread position: | 94-480 |
| Cow position: | chr16:11111856-11111472 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 99, 35 |
| Conread position: | 99-611 |
| Cow position: | chr16:335389-335894 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 338 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 78, 14 |
| Conread position: | 108-500 |
| Cow position: | chr16:26650528-26650918 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 265 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 81, 44 |
| Conread position: | 113-572 |
| Cow position: | chr16:51685534-51686002 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 15 |
| Conread position: | 179-570 |
| Cow position: | chr16:25294014-25294395 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 58 |
| Conread position: | 186-619 |
| Cow position: | chr16:16029966-16030401 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 152, 130 |
| Conread position: | 316-638 |
| Cow position: | chr16:41758140-41757814 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 78 |
| Conread position: | 342-612 |
| Cow position: | chr16:13018436-13018706 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 99, 34 |
| Conread position: | 405-575 |
| Cow position: | chr16:48626629-48626802 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
Show alignments to all cow chromosomes.