Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10199F02.5 |
| Conread position: | 1-275 |
| Cow position: | chr2:45214036-45213756 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 34, 44 |
| Conread position: | 1-300 |
| Cow position: | chr2:54649577-54649273 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 124, 21 |
| Conread position: | 1-441 |
| Cow position: | chr2:19009454-19009895 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 278 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 115, 36 |
| Conread position: | 1-455 |
| Cow position: | chr2:32458787-32458332 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 34 |
| Conread position: | 1-480 |
| Cow position: | chr2:283473-282990 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 310 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 115, 36 |
| Conread position: | 1-497 |
| Cow position: | chr2:65939227-65938727 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 316 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 189, 36 |
| Conread position: | 1-602 |
| Cow position: | chr2:53328971-53329577 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 399 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 175, 36 |
| Conread position: | 2-385 |
| Cow position: | chr2:5871108-5870728 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 188, 71 |
| Conread position: | 2-480 |
| Cow position: | chr2:52152631-52152161 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 319 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 33, 45 |
| Conread position: | 2-482 |
| Cow position: | chr2:57334425-57334901 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 302 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 192, 33 |
| Conread position: | 2-519 |
| Cow position: | chr2:85356546-85356029 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 343 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 186, 40 |
| Conread position: | 2-521 |
| Cow position: | chr2:52655699-52656217 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 351 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 183, 14 |
| Conread position: | 2-571 |
| Cow position: | chr2:52615692-52616270 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 371 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 113, 33 |
| Conread position: | 2-577 |
| Cow position: | chr2:6772941-6772369 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 45 |
| Conread position: | 2-577 |
| Cow position: | chr2:72922608-72922026 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 378 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 189, 33 |
| Conread position: | 2-578 |
| Cow position: | chr2:51991309-51990725 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 367 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 113, 33 |
| Conread position: | 2-579 |
| Cow position: | chr2:57142466-57141879 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 362 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 185, 33 |
| Conread position: | 2-599 |
| Cow position: | chr2:50984002-50983400 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 388 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 185, 35 |
| Conread position: | 2-615 |
| Cow position: | chr2:41685734-41686357 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 382 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 192, 33 |
| Conread position: | 3-482 |
| Cow position: | chr2:44345937-44346420 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 44 |
| Conread position: | 3-571 |
| Cow position: | chr2:2185030-2184458 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 363 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 112, 42 |
| Conread position: | 4-482 |
| Cow position: | chr2:176308-175824 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 310 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 30, 45 |
| Conread position: | 5-482 |
| Cow position: | chr2:78741363-78741835 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 306 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 186, 21 |
| Conread position: | 5-564 |
| Cow position: | chr2:14560421-14560971 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 361 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 145, 32 |
| Conread position: | 8-571 |
| Cow position: | chr2:49471474-49472045 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 361 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 179, 15 |
| Conread position: | 8-577 |
| Cow position: | chr2:50076832-50077401 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 364 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 27, 36 |
| Conread position: | 8-578 |
| Cow position: | chr2:59414455-59413875 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 366 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 17, 71 |
| Conread position: | 9-482 |
| Cow position: | chr2:41171918-41172382 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 314 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 38, 23 |
| Conread position: | 11-519 |
| Cow position: | chr2:202421-201916 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 320 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 176, 24 |
| Conread position: | 12-610 |
| Cow position: | chr2:1673416-1672832 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 392 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 189, 23 |
| Conread position: | 16-482 |
| Cow position: | chr2:9907148-9907617 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 299 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 175, 19 |
| Conread position: | 23-577 |
| Cow position: | chr2:11969518-11968964 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 370 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 153, 19 |
| Conread position: | 23-578 |
| Cow position: | chr2:25031237-25030671 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 354 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 20, 53 |
| Conread position: | 27-609 |
| Cow position: | chr2:11691449-11692014 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 48 |
| Conread position: | 34-482 |
| Cow position: | chr2:10712176-10711732 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 11 |
| Conread position: | 34-615 |
| Cow position: | chr2:50402527-50403107 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 27 |
| Conread position: | 36-623 |
| Cow position: | chr2:45921993-45921409 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 84 |
| Conread position: | 37-480 |
| Cow position: | chr2:52174060-52173624 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 36 |
| Conread position: | 37-609 |
| Cow position: | chr2:34475625-34475081 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 37 |
| Conread position: | 37-638 |
| Cow position: | chr2:15580725-15580116 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 31 |
| Conread position: | 40-609 |
| Cow position: | chr2:77207924-77208481 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 40 |
| Conread position: | 43-609 |
| Cow position: | chr2:36991150-36991723 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 33 |
| Conread position: | 47-610 |
| Cow position: | chr2:28746747-28747296 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 377 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 129, 31 |
| Conread position: | 50-312 |
| Cow position: | chr2:3439659-3439929 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 139, 23 |
| Conread position: | 50-480 |
| Cow position: | chr2:67430334-67430746 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 296 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 96, 24 |
| Conread position: | 50-481 |
| Cow position: | chr2:34565659-34565226 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 289 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 24, 38 |
| Conread position: | 50-557 |
| Cow position: | chr2:10186954-10186449 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 333 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 137, 24 |
| Conread position: | 50-560 |
| Cow position: | chr2:4405080-4404561 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 322 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 144, 28 |
| Conread position: | 50-562 |
| Cow position: | chr2:42334000-42333501 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 332 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 46, 28 |
| Conread position: | 50-571 |
| Cow position: | chr2:2413529-2412998 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 344 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 140, 24 |
| Conread position: | 50-577 |
| Cow position: | chr2:46945940-46946472 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 349 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 126, 24 |
| Conread position: | 50-578 |
| Cow position: | chr2:44090567-44091106 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 343 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 140, 24 |
| Conread position: | 50-578 |
| Cow position: | chr2:47039141-47038609 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 356 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 144, 24 |
| Conread position: | 50-599 |
| Cow position: | chr2:47810283-47810841 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 356 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 151, 28 |
| Conread position: | 52-275 |
| Cow position: | chr2:8117522-8117750 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 138, 26 |
| Conread position: | 52-419 |
| Cow position: | chr2:38589454-38589797 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 253 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 118, 21 |
| Conread position: | 52-524 |
| Cow position: | chr2:4235446-4235908 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 26 |
| Conread position: | 52-609 |
| Cow position: | chr2:7901553-7902118 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 356 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 139, 28 |
| Conread position: | 52-614 |
| Cow position: | chr2:3749179-3749755 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 26 |
| Conread position: | 53-433 |
| Cow position: | chr2:20921510-20921132 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 270 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 134, 20 |
| Conread position: | 53-577 |
| Cow position: | chr2:26868547-26869072 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 355 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 114, 21 |
| Conread position: | 54-616 |
| Cow position: | chr2:63293301-63292722 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 368 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 68, 34 |
| Conread position: | 55-468 |
| Cow position: | chr2:20876341-20875949 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 285 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 133, 23 |
| Conread position: | 55-575 |
| Cow position: | chr2:20874879-20874378 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 23 |
| Conread position: | 57-276 |
| Cow position: | chr2:46465935-46465711 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 61, 16 |
| Conread position: | 60-425 |
| Cow position: | chr2:10294406-10294774 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 15, 39 |
| Conread position: | 60-633 |
| Cow position: | chr2:7210983-7211558 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 389 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 110, 13 |
| Conread position: | 63-587 |
| Cow position: | chr2:43958902-43959404 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 336 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 21, 46 |
| Conread position: | 78-584 |
| Cow position: | chr2:72109217-72108735 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 260, 108 |
| Conread position: | 88-387 |
| Cow position: | chr2:38372147-38372444 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 25, 48 |
| Conread position: | 88-480 |
| Cow position: | chr2:53552480-53552870 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 260 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 71, 62 |
| Conread position: | 88-482 |
| Cow position: | chr2:2102160-2101766 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 270 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 88, 25 |
| Conread position: | 99-572 |
| Cow position: | chr2:769069-768589 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 311 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 94, 16 |
| Conread position: | 111-578 |
| Cow position: | chr2:212890-212416 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 301 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 83, 20 |
| Conread position: | 186-460 |
| Cow position: | chr2:29029522-29029784 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 94, 47 |
| Conread position: | 196-637 |
| Cow position: | chr2:45968909-45968487 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 63 |
| Conread position: | 198-482 |
| Cow position: | chr2:39621716-39621993 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 138, 72 |
| Conread position: | 386-621 |
| Cow position: | chr2:63977524-63977762 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 95, 58 |
| Conread position: | 421-609 |
| Cow position: | chr2:11727617-11727801 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 56, 83 |
Show alignments to all cow chromosomes.