Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10199F02.5 |
| Conread position: | 1-409 |
| Cow position: | chr21:33251245-33251657 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 263 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 112, 36 |
| Conread position: | 1-477 |
| Cow position: | chr21:2530272-2529794 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 304 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 34, 45 |
| Conread position: | 1-480 |
| Cow position: | chr21:216167-216624 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 329 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 96, 33 |
| Conread position: | 1-481 |
| Cow position: | chr21:10849933-10850416 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 306 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 108, 36 |
| Conread position: | 1-577 |
| Cow position: | chr21:30561655-30562241 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 381 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 189, 36 |
| Conread position: | 2-482 |
| Cow position: | chr21:3615148-3615650 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 328 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 174, 33 |
| Conread position: | 2-567 |
| Cow position: | chr21:11453799-11453228 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 354 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 185, 33 |
| Conread position: | 2-571 |
| Cow position: | chr21:4076706-4077269 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 372 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 133, 24 |
| Conread position: | 2-571 |
| Cow position: | chr21:4090504-4091081 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 365 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 6, 34 |
| Conread position: | 2-577 |
| Cow position: | chr21:34292873-34293454 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 381 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 31, 45 |
| Conread position: | 4-482 |
| Cow position: | chr21:4222829-4222355 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 319 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 186, 41 |
| Conread position: | 5-610 |
| Cow position: | chr21:23860642-23861252 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 395 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 171, 37 |
| Conread position: | 9-571 |
| Cow position: | chr21:2510516-2511083 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 356 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 185, 26 |
| Conread position: | 10-578 |
| Cow position: | chr21:11505449-11506035 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 372 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 113, 25 |
| Conread position: | 35-482 |
| Cow position: | chr21:37044800-37045248 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 280 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 152, 7 |
| Conread position: | 37-249 |
| Cow position: | chr21:4083538-4083753 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 143, 41 |
| Conread position: | 37-528 |
| Cow position: | chr21:993136-992640 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 38 |
| Conread position: | 37-564 |
| Cow position: | chr21:20744861-20744344 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 36 |
| Conread position: | 50-188 |
| Cow position: | chr21:10762093-10762230 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 108, 23 |
| Conread position: | 50-482 |
| Cow position: | chr21:3426389-3426823 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 286 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 50, 24 |
| Conread position: | 50-482 |
| Cow position: | chr21:48116009-48116439 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 279 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 66, 28 |
| Conread position: | 50-497 |
| Cow position: | chr21:21947900-21947451 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 294 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 141, 28 |
| Conread position: | 50-571 |
| Cow position: | chr21:36714534-36715060 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 346 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 114, 30 |
| Conread position: | 50-577 |
| Cow position: | chr21:2416140-2416657 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 349 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 137, 28 |
| Conread position: | 50-577 |
| Cow position: | chr21:4456731-4457265 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 348 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 67, 17 |
| Conread position: | 50-577 |
| Cow position: | chr21:35596272-35596805 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 350 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 126, 11 |
| Conread position: | 50-578 |
| Cow position: | chr21:26638562-26638026 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 343 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 144, 24 |
| Conread position: | 50-578 |
| Cow position: | chr21:31559754-31559216 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 351 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 63, 24 |
| Conread position: | 52-634 |
| Cow position: | chr21:13124092-13123516 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 392 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 139, 22 |
| Conread position: | 53-610 |
| Cow position: | chr21:358920-359505 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 373 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 53, 25 |
| Conread position: | 55-316 |
| Cow position: | chr21:21517109-21517367 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 135, 18 |
| Conread position: | 58-609 |
| Cow position: | chr21:6699646-6699109 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 16 |
| Conread position: | 88-560 |
| Cow position: | chr21:2789053-2788572 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 319 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 102, 197 |
| Conread position: | 99-572 |
| Cow position: | chr21:21914237-21914717 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 319 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 94, 14 |
| Conread position: | 110-638 |
| Cow position: | chr21:23601158-23601693 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 191 |
| Conread position: | 143-628 |
| Cow position: | chr21:3194389-3194871 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 115 |
| Conread position: | 175-578 |
| Cow position: | chr21:6339599-6340005 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 162, 92 |
| Conread position: | 191-468 |
| Cow position: | chr21:34054690-34054411 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 96, 16 |
| Conread position: | 192-567 |
| Cow position: | chr21:10762456-10762813 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 278 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 86, 99 |
| Conread position: | 196-609 |
| Cow position: | chr21:21926648-21926228 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 95 |
| Conread position: | 244-575 |
| Cow position: | chr21:4086910-4087238 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 36, 54 |
| Conread position: | 346-614 |
| Cow position: | chr21:25799301-25799557 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 132, 36 |
| Conread position: | 434-609 |
| Cow position: | chr21:26094963-26095146 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 53, 89 |
| Conread position: | 461-636 |
| Cow position: | chr21:25974572-25974751 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 21, 118 |
Show alignments to all cow chromosomes.