Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10199F02.5 |
| Conread position: | 1-264 |
| Cow position: | chr28:1168439-1168173 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 189, 36 |
| Conread position: | 1-264 |
| Cow position: | chr28:34593568-34593833 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 121, 36 |
| Conread position: | 1-482 |
| Cow position: | chr28:7001713-7002199 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 317 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 175, 36 |
| Conread position: | 1-552 |
| Cow position: | chr28:17667787-17667229 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 360 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 175, 44 |
| Conread position: | 1-553 |
| Cow position: | chr28:10582260-10581701 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 359 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 190, 36 |
| Conread position: | 1-577 |
| Cow position: | chr28:17388206-17388792 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 374 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 166, 36 |
| Conread position: | 1-578 |
| Cow position: | chr28:1952864-1953440 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 366 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 193, 44 |
| Conread position: | 1-599 |
| Cow position: | chr28:782123-782729 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 379 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 190, 36 |
| Conread position: | 1-599 |
| Cow position: | chr28:1815142-1814533 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 385 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 108, 36 |
| Conread position: | 2-388 |
| Cow position: | chr28:10591645-10591267 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 72 |
| Conread position: | 2-435 |
| Cow position: | chr28:15950707-15951142 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 272 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 185, 33 |
| Conread position: | 2-519 |
| Cow position: | chr28:21358746-21359256 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 342 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 204, 33 |
| Conread position: | 2-571 |
| Cow position: | chr28:13441151-13440573 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 356 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 174, 33 |
| Conread position: | 2-577 |
| Cow position: | chr28:2591647-2592225 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 378 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 33, 47 |
| Conread position: | 2-578 |
| Cow position: | chr28:14750274-14750857 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 369 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 185, 33 |
| Conread position: | 3-557 |
| Cow position: | chr28:13459698-13460259 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 357 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 187, 34 |
| Conread position: | 3-577 |
| Cow position: | chr28:9953862-9954443 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 382 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 32, 44 |
| Conread position: | 4-571 |
| Cow position: | chr28:9155552-9154982 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 377 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 131, 28 |
| Conread position: | 6-620 |
| Cow position: | chr28:34648672-34649292 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 410 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 120, 24 |
| Conread position: | 8-513 |
| Cow position: | chr28:8721715-8721200 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 339 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 18, 74 |
| Conread position: | 9-497 |
| Cow position: | chr28:5565594-5566082 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 314 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 26, 36 |
| Conread position: | 27-482 |
| Cow position: | chr28:4381066-4380635 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 301 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 251, 15 |
| Conread position: | 34-482 |
| Cow position: | chr28:7901114-7901564 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 305 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 159, 11 |
| Conread position: | 37-614 |
| Cow position: | chr28:18102166-18101608 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 36 |
| Conread position: | 50-260 |
| Cow position: | chr28:5752104-5751886 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 140, 24 |
| Conread position: | 50-276 |
| Cow position: | chr28:24652064-24652297 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 140, 28 |
| Conread position: | 50-482 |
| Cow position: | chr28:7822027-7822467 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 289 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 69, 24 |
| Conread position: | 50-482 |
| Cow position: | chr28:22261378-22260941 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 284 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 66, 28 |
| Conread position: | 50-557 |
| Cow position: | chr28:8378340-8378858 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 348 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 141, 24 |
| Conread position: | 50-577 |
| Cow position: | chr28:3193018-3192481 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 345 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 140, 24 |
| Conread position: | 50-577 |
| Cow position: | chr28:32792606-32792070 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 351 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 140, 24 |
| Conread position: | 50-578 |
| Cow position: | chr28:24587206-24587745 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 335 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 144, 24 |
| Conread position: | 51-578 |
| Cow position: | chr28:6780555-6780023 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 332 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 116, 23 |
| Conread position: | 52-296 |
| Cow position: | chr28:34324603-34324851 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 141, 22 |
| Conread position: | 52-482 |
| Cow position: | chr28:2083379-2083806 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 287 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 61, 26 |
| Conread position: | 78-600 |
| Cow position: | chr28:24667381-24667913 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 343 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 87, 59 |
| Conread position: | 85-610 |
| Cow position: | chr28:15585201-15585736 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 31 |
| Conread position: | 97-522 |
| Cow position: | chr28:12233155-12232744 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 297 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 136, 19 |
| Conread position: | 135-312 |
| Cow position: | chr28:17311771-17311960 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 192-570 |
| Cow position: | chr28:9137127-9136749 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 41, 15 |
| Conread position: | 317-544 |
| Cow position: | chr28:5800669-5800895 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 176 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 22, 74 |
| Conread position: | 326-608 |
| Cow position: | chr28:18181095-18180813 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 206 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 10, 67 |
| Conread position: | 371-610 |
| Cow position: | chr28:29437196-29436938 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 67, 16 |
Show alignments to all cow chromosomes.