Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10199F02.5 |
| Conread position: | 1-553 |
| Cow position: | chr29:48785-48230 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 367 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 189, 41 |
| Conread position: | 1-553 |
| Cow position: | chr29:7431525-7430969 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 354 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 175, 42 |
| Conread position: | 1-557 |
| Cow position: | chr29:39080015-39079457 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 370 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 112, 36 |
| Conread position: | 1-577 |
| Cow position: | chr29:2841674-2841097 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 375 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 189, 36 |
| Conread position: | 1-597 |
| Cow position: | chr29:40503288-40502686 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 387 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 175, 36 |
| Conread position: | 1-599 |
| Cow position: | chr29:38226685-38227280 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 384 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 112, 36 |
| Conread position: | 2-482 |
| Cow position: | chr29:11048979-11049453 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 320 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 188, 25 |
| Conread position: | 2-482 |
| Cow position: | chr29:16769828-16770298 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 316 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 188, 24 |
| Conread position: | 2-570 |
| Cow position: | chr29:14013169-14013731 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 358 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 120, 23 |
| Conread position: | 2-570 |
| Cow position: | chr29:43366304-43365734 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 360 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 27, 44 |
| Conread position: | 2-577 |
| Cow position: | chr29:27041068-27040496 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 372 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 189, 40 |
| Conread position: | 4-295 |
| Cow position: | chr29:34609247-34608959 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 172, 18 |
| Conread position: | 4-482 |
| Cow position: | chr29:21543678-21543194 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 319 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 76, 23 |
| Conread position: | 6-384 |
| Cow position: | chr29:21427358-21426974 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 129, 17 |
| Conread position: | 6-602 |
| Cow position: | chr29:32539502-32540111 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 388 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 29, 71 |
| Conread position: | 8-433 |
| Cow position: | chr29:13853322-13852898 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 286 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 108, 27 |
| Conread position: | 8-578 |
| Cow position: | chr29:610913-610336 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 363 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 108, 27 |
| Conread position: | 10-571 |
| Cow position: | chr29:27250634-27250073 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 359 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 177, 12 |
| Conread position: | 11-480 |
| Cow position: | chr29:104280-104740 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 306 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 183, 24 |
| Conread position: | 13-577 |
| Cow position: | chr29:35196381-35196940 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 377 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 19, 8 |
| Conread position: | 40-614 |
| Cow position: | chr29:8063172-8062579 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 33 |
| Conread position: | 40-623 |
| Cow position: | chr29:16017407-16016830 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 33 |
| Conread position: | 50-482 |
| Cow position: | chr29:5957342-5957779 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 273 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 140, 28 |
| Conread position: | 50-482 |
| Cow position: | chr29:25932805-25932369 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 285 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 140, 28 |
| Conread position: | 50-599 |
| Cow position: | chr29:26165083-26164523 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 359 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 140, 24 |
| Conread position: | 51-468 |
| Cow position: | chr29:17662661-17663065 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 76, 27 |
| Conread position: | 51-513 |
| Cow position: | chr29:2099584-2100059 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 311 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 136, 23 |
| Conread position: | 52-312 |
| Cow position: | chr29:30108842-30109096 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 41, 26 |
| Conread position: | 52-587 |
| Cow position: | chr29:19893506-19894056 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 342 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 45, 26 |
| Conread position: | 52-617 |
| Cow position: | chr29:15950438-15949876 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 374 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 124, 21 |
| Conread position: | 64-280 |
| Cow position: | chr29:2368146-2367924 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 112, 10 |
| Conread position: | 86-468 |
| Cow position: | chr29:4635192-4634815 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 269 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 104, 42 |
| Conread position: | 88-467 |
| Cow position: | chr29:24198844-24198459 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 271 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 49, 25 |
| Conread position: | 88-519 |
| Cow position: | chr29:30811311-30811742 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 295 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 86, 25 |
| Conread position: | 89-558 |
| Cow position: | chr29:11855376-11855858 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 52 |
| Conread position: | 192-558 |
| Cow position: | chr29:11841553-11841913 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 105, 15 |
Show alignments to all cow chromosomes.