Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10199F02.5 |
| Conread position: | 1-452 |
| Cow position: | chr3:15989429-15988972 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 281 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 37, 74 |
| Conread position: | 1-482 |
| Cow position: | chr3:5883149-5883632 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 308 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 189, 36 |
| Conread position: | 1-482 |
| Cow position: | chr3:6685073-6685554 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 317 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 34, 20 |
| Conread position: | 1-482 |
| Cow position: | chr3:15177918-15178404 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 305 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 12, 90 |
| Conread position: | 1-482 |
| Cow position: | chr3:34031288-34030806 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 308 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 108, 36 |
| Conread position: | 1-482 |
| Cow position: | chr3:38866017-38866488 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 313 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 190, 36 |
| Conread position: | 1-482 |
| Cow position: | chr3:40822997-40823480 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 309 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 189, 36 |
| Conread position: | 1-482 |
| Cow position: | chr3:66119266-66119748 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 318 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 24, 45 |
| Conread position: | 1-557 |
| Cow position: | chr3:57485113-57484557 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 367 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 34, 43 |
| Conread position: | 1-572 |
| Cow position: | chr3:58947073-58947645 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 19 |
| Conread position: | 1-577 |
| Cow position: | chr3:36882303-36881728 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 374 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 190, 36 |
| Conread position: | 1-577 |
| Cow position: | chr3:64017755-64017171 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 372 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 189, 36 |
| Conread position: | 1-578 |
| Cow position: | chr3:56320919-56321509 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 378 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 115, 34 |
| Conread position: | 2-257 |
| Cow position: | chr3:49140797-49140541 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 184, 33 |
| Conread position: | 2-346 |
| Cow position: | chr3:64821246-64821595 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 39 |
| Conread position: | 2-482 |
| Cow position: | chr3:5047569-5047091 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 318 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 169, 28 |
| Conread position: | 2-482 |
| Cow position: | chr3:19757350-19756866 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 313 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 33, 43 |
| Conread position: | 2-482 |
| Cow position: | chr3:42580350-42579874 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 309 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 188, 19 |
| Conread position: | 2-482 |
| Cow position: | chr3:46678303-46677821 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 305 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 192, 33 |
| Conread position: | 2-482 |
| Cow position: | chr3:57856346-57856830 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 300 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 185, 33 |
| Conread position: | 2-571 |
| Cow position: | chr3:64028473-64027899 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 369 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 189, 35 |
| Conread position: | 2-577 |
| Cow position: | chr3:207550-206967 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 378 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 33, 45 |
| Conread position: | 2-577 |
| Cow position: | chr3:2653721-2654296 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 370 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 33, 44 |
| Conread position: | 2-577 |
| Cow position: | chr3:5830019-5829437 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 45 |
| Conread position: | 2-577 |
| Cow position: | chr3:31898362-31897783 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 392 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 33, 44 |
| Conread position: | 2-578 |
| Cow position: | chr3:9716421-9717005 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 383 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 150, 40 |
| Conread position: | 2-578 |
| Cow position: | chr3:41212128-41211543 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 388 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 188, 33 |
| Conread position: | 2-578 |
| Cow position: | chr3:45032351-45032935 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 369 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 192, 33 |
| Conread position: | 2-578 |
| Cow position: | chr3:64650242-64650820 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 374 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 192, 32 |
| Conread position: | 3-482 |
| Cow position: | chr3:17829031-17828556 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 306 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 184, 35 |
| Conread position: | 3-482 |
| Cow position: | chr3:31354642-31354172 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 326 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 31, 43 |
| Conread position: | 3-610 |
| Cow position: | chr3:64358553-64357939 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 393 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 136, 32 |
| Conread position: | 5-306 |
| Cow position: | chr3:40104306-40104002 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 13, 57 |
| Conread position: | 6-636 |
| Cow position: | chr3:42630630-42631266 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 421 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 29, 40 |
| Conread position: | 8-442 |
| Cow position: | chr3:21945789-21945356 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 287 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 48, 72 |
| Conread position: | 8-571 |
| Cow position: | chr3:49614361-49613790 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 350 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 179, 27 |
| Conread position: | 8-578 |
| Cow position: | chr3:46861682-46861109 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 365 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 186, 27 |
| Conread position: | 8-609 |
| Cow position: | chr3:32618287-32617697 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 23 |
| Conread position: | 8-622 |
| Cow position: | chr3:26949133-26949748 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 409 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 167, 27 |
| Conread position: | 9-482 |
| Cow position: | chr3:19878279-19878751 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 299 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 181, 26 |
| Conread position: | 9-578 |
| Cow position: | chr3:22335510-22336082 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 363 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 178, 13 |
| Conread position: | 10-322 |
| Cow position: | chr3:60388000-60388313 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 230 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 177, 25 |
| Conread position: | 10-578 |
| Cow position: | chr3:3522632-3523215 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 374 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 177, 25 |
| Conread position: | 11-394 |
| Cow position: | chr3:63005530-63005138 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 89, 24 |
| Conread position: | 12-276 |
| Cow position: | chr3:12681059-12680799 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 216, 61 |
| Conread position: | 14-571 |
| Cow position: | chr3:472161-472719 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 379 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 162, 8 |
| Conread position: | 37-295 |
| Cow position: | chr3:3932400-3932657 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 108, 36 |
| Conread position: | 47-577 |
| Cow position: | chr3:2633582-2634114 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 338 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 144, 27 |
| Conread position: | 50-310 |
| Cow position: | chr3:4739259-4739006 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 152, 28 |
| Conread position: | 50-411 |
| Cow position: | chr3:80871564-80871917 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 32, 38 |
| Conread position: | 50-480 |
| Cow position: | chr3:18357222-18356796 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 294 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 143, 32 |
| Conread position: | 50-482 |
| Cow position: | chr3:18542751-18542315 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 287 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 140, 23 |
| Conread position: | 50-482 |
| Cow position: | chr3:66638396-66638833 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 140, 30 |
| Conread position: | 50-482 |
| Cow position: | chr3:75041506-75041075 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 291 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 140, 24 |
| Conread position: | 50-522 |
| Cow position: | chr3:53410577-53411049 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 323 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 143, 30 |
| Conread position: | 50-577 |
| Cow position: | chr3:18811160-18811694 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 351 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 140, 24 |
| Conread position: | 50-610 |
| Cow position: | chr3:4026932-4027503 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 379 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 99, 19 |
| Conread position: | 50-624 |
| Cow position: | chr3:18729475-18728897 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 24 |
| Conread position: | 51-577 |
| Cow position: | chr3:60210518-60209989 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 351 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 42, 27 |
| Conread position: | 51-609 |
| Cow position: | chr3:17936406-17935836 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 26 |
| Conread position: | 52-578 |
| Cow position: | chr3:47081999-47081464 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 343 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 135, 26 |
| Conread position: | 52-610 |
| Cow position: | chr3:16072821-16073355 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 21 |
| Conread position: | 55-312 |
| Cow position: | chr3:52184572-52184300 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 49, 25 |
| Conread position: | 55-578 |
| Cow position: | chr3:19722938-19722426 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 18 |
| Conread position: | 57-623 |
| Cow position: | chr3:21305507-21304940 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 51 |
| Conread position: | 74-633 |
| Cow position: | chr3:14754618-14754044 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 379 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 13, 157 |
| Conread position: | 77-504 |
| Cow position: | chr3:42445384-42444973 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 161 |
| Conread position: | 78-482 |
| Cow position: | chr3:19943747-19944143 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 266 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 36, 189 |
| Conread position: | 78-571 |
| Cow position: | chr3:45869519-45869031 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 328 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 90, 30 |
| Conread position: | 88-480 |
| Cow position: | chr3:54865003-54864608 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 50 |
| Conread position: | 88-520 |
| Cow position: | chr3:70083950-70083512 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 293 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 102, 27 |
| Conread position: | 92-572 |
| Cow position: | chr3:49333099-49333576 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 311 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 85, 38 |
| Conread position: | 94-509 |
| Cow position: | chr3:17775800-17776210 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 34 |
| Conread position: | 106-305 |
| Cow position: | chr3:58208379-58208170 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 44, 24 |
| Conread position: | 192-498 |
| Cow position: | chr3:29327175-29326868 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 105, 124 |
| Conread position: | 206-466 |
| Cow position: | chr3:49276299-49276044 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 26, 106 |
| Conread position: | 391-623 |
| Cow position: | chr3:49601934-49601704 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 108, 20 |
| Conread position: | 420-609 |
| Cow position: | chr3:12680392-12680204 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 58, 41 |
| Conread position: | 432-623 |
| Cow position: | chr3:64821645-64821837 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 63, 87 |
Show alignments to all cow chromosomes.