Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10199F02.5 |
| Conread position: | 1-482 |
| Cow position: | chr4:13491989-13492473 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 304 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 189, 36 |
| Conread position: | 1-482 |
| Cow position: | chr4:18516309-18516794 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 309 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 189, 36 |
| Conread position: | 1-482 |
| Cow position: | chr4:43880523-43881006 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 309 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 34, 43 |
| Conread position: | 1-557 |
| Cow position: | chr4:24445786-24445229 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 358 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 1-557 |
| Cow position: | chr4:44724496-44725061 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 356 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 28, 44 |
| Conread position: | 1-577 |
| Cow position: | chr4:17926841-17926256 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 365 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 115, 36 |
| Conread position: | 2-481 |
| Cow position: | chr4:602411-602890 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 313 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 189, 33 |
| Conread position: | 2-571 |
| Cow position: | chr4:13547442-13548021 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 357 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 185, 33 |
| Conread position: | 2-578 |
| Cow position: | chr4:101515-100934 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 357 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 188, 40 |
| Conread position: | 2-578 |
| Cow position: | chr4:47764756-47764172 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 361 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 185, 33 |
| Conread position: | 2-599 |
| Cow position: | chr4:12241801-12241195 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 390 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 188, 36 |
| Conread position: | 3-482 |
| Cow position: | chr4:1931200-1930726 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 314 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 112, 27 |
| Conread position: | 3-578 |
| Cow position: | chr4:32211587-32212166 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 356 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 191, 42 |
| Conread position: | 4-575 |
| Cow position: | chr4:46663620-46664188 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 366 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 172, 29 |
| Conread position: | 5-468 |
| Cow position: | chr4:24198780-24198330 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 332 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 22, 52 |
| Conread position: | 6-610 |
| Cow position: | chr4:28830457-28831056 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 399 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 68, 29 |
| Conread position: | 8-482 |
| Cow position: | chr4:18425097-18424627 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 305 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 186, 27 |
| Conread position: | 9-276 |
| Cow position: | chr4:10408203-10408475 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 24, 35 |
| Conread position: | 10-482 |
| Cow position: | chr4:39272516-39272038 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 318 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 183, 20 |
| Conread position: | 10-615 |
| Cow position: | chr4:40824823-40824215 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 64 |
| Conread position: | 16-242 |
| Cow position: | chr4:27442518-27442750 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 96, 7 |
| Conread position: | 34-462 |
| Cow position: | chr4:66925453-66925877 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 292 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 88, 11 |
| Conread position: | 34-577 |
| Cow position: | chr4:66179538-66178991 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 366 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 157, 11 |
| Conread position: | 37-623 |
| Cow position: | chr4:969592-968995 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 36 |
| Conread position: | 37-637 |
| Cow position: | chr4:1497301-1496697 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 36 |
| Conread position: | 40-614 |
| Cow position: | chr4:496486-495935 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 33 |
| Conread position: | 40-622 |
| Cow position: | chr4:4175894-4176466 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 10 |
| Conread position: | 43-557 |
| Cow position: | chr4:25600158-25599641 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 335 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 11, 36 |
| Conread position: | 50-353 |
| Cow position: | chr4:11383872-11384177 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 143, 28 |
| Conread position: | 50-460 |
| Cow position: | chr4:33493273-33493683 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 272 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 140, 24 |
| Conread position: | 50-480 |
| Cow position: | chr4:29532253-29531819 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 140, 28 |
| Conread position: | 50-482 |
| Cow position: | chr4:4905615-4906044 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 300 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 66, 24 |
| Conread position: | 50-482 |
| Cow position: | chr4:6269167-6268730 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 284 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 66, 24 |
| Conread position: | 50-577 |
| Cow position: | chr4:36895835-36896366 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 335 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 140, 28 |
| Conread position: | 50-578 |
| Cow position: | chr4:157977-158514 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 350 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 137, 24 |
| Conread position: | 50-578 |
| Cow position: | chr4:30307992-30307460 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 339 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 105, 24 |
| Conread position: | 50-599 |
| Cow position: | chr4:48025863-48026418 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 354 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 129, 24 |
| Conread position: | 51-609 |
| Cow position: | chr4:6215090-6214532 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 16 |
| Conread position: | 52-482 |
| Cow position: | chr4:528456-528891 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 284 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 138, 22 |
| Conread position: | 52-578 |
| Cow position: | chr4:5879641-5880164 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 341 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 143, 22 |
| Conread position: | 52-623 |
| Cow position: | chr4:17530952-17530389 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 21 |
| Conread position: | 70-609 |
| Cow position: | chr4:54157508-54158025 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 182 |
| Conread position: | 74-482 |
| Cow position: | chr4:47718125-47717709 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 271 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 51, 241 |
| Conread position: | 80-609 |
| Cow position: | chr4:22471687-22472197 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 30 |
| Conread position: | 87-420 |
| Cow position: | chr4:15263485-15263158 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 237 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 86, 18 |
| Conread position: | 88-578 |
| Cow position: | chr4:11393838-11393348 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 324 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 105, 230 |
| Conread position: | 89-295 |
| Cow position: | chr4:51044381-51044176 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 73, 33 |
| Conread position: | 101-617 |
| Cow position: | chr4:8598627-8598119 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 77 |
| Conread position: | 107-527 |
| Cow position: | chr4:3829999-3830423 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 127 |
| Conread position: | 121-572 |
| Cow position: | chr4:62565519-62565977 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 175 |
| Conread position: | 188-468 |
| Cow position: | chr4:23493352-23493620 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 39, 28 |
| Conread position: | 393-609 |
| Cow position: | chr4:17382622-17382404 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 85, 36 |
Show alignments to all cow chromosomes.